RchiOBHm_Chr7g0184461

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015955
Physical Location & Seq
Forward (+)
4987249 .. 4988193
945 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
ATGACACTCTCTCTCTCCGTCCCCCGCTCTCTCCAACTCATCTCCTCCATGGCGGACCGTCACCAGCAACCCCACCAGGCCCAGAACCACCAGCAACACCGATTATCAGCCCAAACCAGACCCTCCCACACCTCGTTCCTAAGTAAACTCCAAGGCCACGTCCCAAATTCCACTCAACTCATCGGACTACTCACCCTCCTCGTCTCCGGCGGTATTCTCCTACTCCTGACAGGAATCACGATCACCGTTACGGTTCTGGGACTCATCTTCTTCACTCCAATCCTCATAGTTTCCAGCCCGATATGGGTCCCACTCGGGACGGTGCTGTTCCTGACCGCGGCCGGGTTCGTGTCCATGTGCGGGTTCGGGGCCGCCGTCGTGGGCGGGTTGTCGTGGATGTACAGGTACTTCAAGGGGATGCACCCGCCCGGTTCGGACCGGGTTGATTATGCTCGGAGCAGGATTTACGACACGGCTAGCCACGTCAAGGACTATGCTAAAGAGTACGGTGGGTATTTGCATGGTAAGGTCAAGGATGCAGCTCCGGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

184

Amino Acids

19.94

Weight (kDa)

9.81

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 58 - 170 2e-45 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48990 AT3G18570
fragaria_vesca FvH4_5g12770
malus_domestica MD06G1210400.v1.1 MD14G1221100.v1.1 MD17G1068400.v1.1
prunus_persica Prupe.5G216500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184461
rosa_laevigata RLG00000004973
rosa_multiflora Rmu_sc0001557.1_g000014
rosa_roxburghii Rroxscaffold_3G00269590
rosa_samantha Rh7BG067500 Rh7CG067800 Rh7DG067500
rosa_wichuraiana Rw7G005560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 27
AccII CGCG 1 cut(s) 338
AciI CCGC 9 cut(s) 25, 53, 210, 336, 338, 360, 372, 384, 425
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 3 cut(s) 401, 407, 506
AfiI CCNNNNNNNGG 5 cut(s) 304, 337, 342, 360, 487
AgsI TTSAA 1 cut(s) 412
AjiI CACGTC 2 cut(s) 160, 484
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 2 cut(s) 542, 551
AluI AGCT 2 cut(s) 542, 551
Alw26I GTCTC 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 4 cut(s) 78, 154, 339, 369
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 1 cut(s) 166
AspS9I GGNCC 5 cut(s) 55, 79, 307, 369, 436
AsuC2I CCSGG 4 cut(s) 343, 429, 440, 546
AsuHPI GGTGA 3 cut(s) 53, 184, 235
AsuNHI GCTAGC 1 cut(s) 476
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 3 cut(s) 55, 307, 436
BarI GAAGNNNNNNTAC 2 cut(s) 392, 424
BbvI GCAGC 1 cut(s) 551
BceAI ACGGC 2 cut(s) 359, 489
BciT130I CCWGG 1 cut(s) 77
BcnI CCSGG 4 cut(s) 343, 429, 440, 546
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 1 cut(s) 477
BisI GCNGC 3 cut(s) 339, 372, 540
BlsI GCNGC 3 cut(s) 340, 373, 541
Bme1390I CCNGG 5 cut(s) 77, 343, 429, 440, 546
Bme18I GGWCC 3 cut(s) 55, 307, 436
BmeT110I CYCGRG 1 cut(s) 314
BmgBI CACGTC 2 cut(s) 160, 484
BmgT120I GGNCC 5 cut(s) 55, 79, 307, 369, 436
BmiI GGNNCC 3 cut(s) 308, 309, 370
BmrFI CCNGG 5 cut(s) 77, 343, 429, 440, 546
BmsI GCATC 2 cut(s) 408, 526
BmtI GCTAGC 1 cut(s) 480
BpuMI CCSGG 4 cut(s) 343, 429, 440, 546
BsaJI CCNNGG 3 cut(s) 48, 151, 336
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 337, 342, 360, 487
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 3 cut(s) 48, 151, 336
BseGI GGATG 3 cut(s) 402, 423, 541
BseLI CCNNNNNNNGG 5 cut(s) 304, 337, 342, 360, 487
BseRI GAGGAG 2 cut(s) 34, 188
BseX3I CGGCCG 1 cut(s) 339
BseXI GCAGC 1 cut(s) 551
Bsh1236I CGCG 1 cut(s) 338
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 4 cut(s) 80, 156, 341, 371
BsiEI CGRYCG 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 5 cut(s) 207, 342, 429, 439, 545
BslFI GGGAC 5 cut(s) 5, 146, 273, 293, 331
BslI CCNNNNNNNGG 5 cut(s) 304, 337, 342, 360, 487
BsmAI GTCTC 1 cut(s) 208
BsmBI CGTCTC 1 cut(s) 208
BsmFI GGGAC 5 cut(s) 5, 146, 273, 293, 331
BsnI GGCC 4 cut(s) 80, 156, 341, 371
BsoBI CYCGRG 1 cut(s) 314
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 1 cut(s) 240
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 9 cut(s) 25, 53, 210, 336, 338, 360, 372, 384, 425
BspANI GGCC 4 cut(s) 80, 156, 341, 371
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 3 cut(s) 308, 309, 370
BspOI GCTAGC 1 cut(s) 480
BsrBI CCGCTC 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 48, 151, 336
BssMI GATC 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 48, 151
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 5 cut(s) 59, 247, 253, 322, 509
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 2 cut(s) 140, 552
BstDSI CCRYGG 2 cut(s) 48, 336
BstF5I GGATG 3 cut(s) 402, 423, 541
BstFNI CGCG 1 cut(s) 338
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 1 cut(s) 240
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 5 cut(s) 75, 341, 427, 438, 544
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 551
BstZI CGGCCG 1 cut(s) 339
BsuRI GGCC 4 cut(s) 80, 156, 341, 371
BtgI CCRYGG 2 cut(s) 48, 336
BtrI CACGTC 2 cut(s) 160, 484
BtsCI GGATG 3 cut(s) 402, 423, 541
Cac8I GCNNGC 1 cut(s) 478
Cfr13I GGNCC 5 cut(s) 55, 79, 307, 369, 436
Cfr42I CCGCGG 1 cut(s) 339
CpoI CGGWCCG 2 cut(s) 55, 436
Csp6I GTAC 3 cut(s) 400, 406, 505
CspI CGGWCCG 2 cut(s) 55, 436
CviAII CATG 3 cut(s) 49, 355, 521
CviQI GTAC 3 cut(s) 400, 406, 505
DdeI CTNAG 2 cut(s) 140, 552
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 339
EagI CGGCCG 1 cut(s) 339
EciI GGCGGA 1 cut(s) 68
EclXI CGGCCG 1 cut(s) 339
Eco130I CCWWGG 2 cut(s) 48, 151
Eco47I GGWCC 3 cut(s) 55, 307, 436
Eco52I CGGCCG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 2 cut(s) 48, 151
ErhI CCWWGG 2 cut(s) 48, 151
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 3 cut(s) 52, 358, 524
FaiI YATR 7 cut(s) 50, 287, 304, 356, 450, 495, 522
FaqI GGGAC 5 cut(s) 5, 146, 273, 293, 331
FatI CATG 3 cut(s) 48, 354, 520
FauI CCCGC 4 cut(s) 32, 353, 377, 432
Fnu4HI GCNGC 3 cut(s) 339, 372, 540
FokI GGATG 3 cut(s) 409, 430, 548
Fsp4HI GCNGC 3 cut(s) 339, 372, 540
FspBI CTAG 1 cut(s) 477
GluI GCNGC 3 cut(s) 339, 372, 540
HaeIII GGCC 4 cut(s) 80, 156, 341, 371
HapII CCGG 5 cut(s) 207, 342, 429, 439, 545
Hin1II CATG 3 cut(s) 52, 358, 524
HinfI GANTC 2 cut(s) 234, 261
HpaII CCGG 5 cut(s) 207, 342, 429, 439, 545
HphI GGTGA 3 cut(s) 53, 184, 235
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 3 cut(s) 185, 436, 456
Hpy188III TCNNGA 4 cut(s) 226, 238, 316, 331
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 1 cut(s) 380
HpyCH4III ACNGT 5 cut(s) 59, 247, 253, 322, 509
HpyCH4IV ACGT 2 cut(s) 159, 483
HpyCH4V TGCA 3 cut(s) 421, 520, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 2 cut(s) 140, 552
HpySE526I ACGT 2 cut(s) 159, 483
Hsp92II CATG 3 cut(s) 52, 358, 524
KflI GGGWCCC 1 cut(s) 307
KspI CCGCGG 1 cut(s) 339
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 3 cut(s) 456, 547, 548
Lsp1109I GCAGC 1 cut(s) 551
LweI GCATC 2 cut(s) 408, 526
MaeI CTAG 1 cut(s) 477
MaeII ACGT 2 cut(s) 159, 483
MaeIII GTNAC 2 cut(s) 59, 247
MalI GATC 1 cut(s) 242
MbiI CCGCTC 1 cut(s) 27
MboI GATC 1 cut(s) 240
MboII GAAGA 2 cut(s) 259, 262
MluCI AATT 1 cut(s) 166
MlyI GAGTC 1 cut(s) 255
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 6 cut(s) 55, 133, 142, 206, 209, 293
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 5 cut(s) 207, 342, 429, 439, 545
MspR9I CCNGG 5 cut(s) 77, 343, 429, 440, 546
MvaI CCWGG 1 cut(s) 77
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 548
NciI CCSGG 4 cut(s) 343, 429, 440, 546
NcoI CCATGG 1 cut(s) 48
NdeII GATC 1 cut(s) 240
NheI GCTAGC 1 cut(s) 476
NlaIII CATG 3 cut(s) 52, 358, 524
NlaIV GGNNCC 3 cut(s) 308, 309, 370
NmuCI GTSAC 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PfeI GAWTC 1 cut(s) 234
PfoI TCCNGGA 1 cut(s) 544
PkrI GCNGC 3 cut(s) 340, 373, 541
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PpuMI RGGWCCY 1 cut(s) 307
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 3 cut(s) 308, 309, 370
PspPI GGNCC 5 cut(s) 55, 79, 307, 369, 436
PspPPI RGGWCCY 1 cut(s) 307
RsaI GTAC 3 cut(s) 401, 407, 506
RsaNI GTAC 3 cut(s) 400, 406, 505
Rsr2I CGGWCCG 2 cut(s) 55, 436
RsrII CGGWCCG 2 cut(s) 55, 436
SacII CCGCGG 1 cut(s) 339
SatI GCNGC 3 cut(s) 339, 372, 540
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 5 cut(s) 55, 79, 307, 369, 436
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 5 cut(s) 77, 343, 429, 440, 546
SetI ASST 7 cut(s) 134, 162, 407, 486, 531, 544, 553
SfaNI GCATC 2 cut(s) 408, 526
Sfr303I CCGCGG 1 cut(s) 339
SgrBI CCGCGG 1 cut(s) 339
SinI GGWCC 3 cut(s) 55, 307, 436
Sse9I AATT 1 cut(s) 166
SsiI CCGC 9 cut(s) 25, 53, 210, 336, 338, 360, 372, 384, 425
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 5 cut(s) 75, 341, 427, 438, 544
StyI CCWWGG 2 cut(s) 48, 151
TaaI ACNGT 5 cut(s) 59, 247, 253, 322, 509
TaiI ACGT 2 cut(s) 162, 486
TasI AATT 1 cut(s) 166
TatI WGTACW 1 cut(s) 399
TauI GCSGC 2 cut(s) 341, 374
TfiI GAWTC 1 cut(s) 234
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 539
Tsp45I GTSAC 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 7
VpaK11BI GGWCC 3 cut(s) 55, 307, 436
XapI RAATTY 1 cut(s) 166
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.