RchiOBHm_Chr7g0198011

Xyloglucan galactosyltransferase KATAMARI1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
15772761 .. 15774503
1743 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1743 bp
ATGGCAGTTCCCTTGTCGAAAAGAAATTCCAAACACTTGAAGAAAGAAGCCCCGAAAAGGGAACCTTGTTTCTGTTTCTCACCATGTTTCTGTTTCATTGCTCTATTCAAGTTTCTATATAGACTTCCTGCAGCATTTTTCTTGCTTTTTCTTATCTACCTCTGGTCTTCCTCCACCACCATTATTTCCGGCAACATTGTTCATGTCTGTGTCTCGTCGCGGAAGCTCAACAATCATTACTGCCTATCTGCTGGTAGTACCAGACCCAATTTTGAACTCCCAAATCTCAGTAATGCTACACTTTACCTCCACATTCCTGACCCGAGTTCAAACCTCTCTATCTCGATATCGCCTCCTTTGTCCCAAAAAAACAGTCCCATTAGTCCTCCACCTCCTAAAGTCAGTAGTGAGATTGTGATCAGAGAGACTGTTCAAGTTGTCCATGATGAGTCTGATCCAGTGAAGAATGGAGCCAACAAAGAACGAGAAGAAGAGATTGCAAATGCAAAGAAGGAAGTCGAAGAACAGCTAAGATTGCACAGATCATGGATATCAAATAAGAAGCATGAAGGGTGTGAAGGAAGAGGAGTCTACGTGTATGACTTACCATCCAAGTTTAACAAGGACTTGTTGGGTCAATGCAGAGACATGGTTCCATGGATGGATTTCTGCAAGTACTTCGGGAATGAGGCGTTGGGTGAACCGATTCCCAAACTTGGAGAGGGGTGGTACCACACTCATCAGTACTCATTGGAGCCCATATTCCACCAAAGGATCTTGAAGCACCCTTGCAGGGTTTACAGTGAAAATGAAGCGAAGCTTTTCTATGTTCCATTTTATGGCGGTTTGGACATTCTGAGATGGCATTTCAAGAATGTGTCCAATGATGTCAAGGACACTTTGAGCTTGGAGCTCATAACATGGCTTGAGAAGCAAGACTCTTGGACTAAGAATTCAGGTAGAGATCATTTTCTGGTGTTGGGGAAGATCTCATGGGATTTTAGGAGAAAAGATGGTTCGTGGGGGACTAGATTGCTTGAAATTGATCAAATGCAAAATCCAATCAAGCTCTTGATCGAGAGACAACCATGGCAACCAAATGACATTGGAATCCCACATCCAACATTCTTCCATCCGAATTCAGACGAAGACATCATGGCATTGCAATGGAAGATCATTAGCTCATATAGAAAAAAGCTAGTGAGCTTCGCTGGTGCAGCAAGGCCTGGTGCAGCTGAAAGCATAAGGTCCATACTGATCAACCAGTGCTACACAGCCGAAAATGGGAAATGTCACTTTCTCAACTGTGGTTCAGGTGGTTGTGATCAGCCAGAAATGGTCACTGAGCTTTTCATGGAGTCTGAATTCTGCTTGCAGCCTCCAGGAGATAGCCCAACTCGAAAGTCCTTATTCGATTCCTTAATTTCAGGTTGTATTCCTGTGATTTTCGATCCTTTCACAGCTTACTATCAGTATCCATGGCATCTCCCAGAGGAACATGGAAAGTATTCTGTGTTTGTAGACCAAGAAGATGTGAGGGGAATGAAGGTGAATGTGGTGGAAATGCTTATGAAGATTTCTAAGGAAAAGAGGGATGATATGAGGAGGCACATTGTGTATGAGTTGTTGCCTGGTTTGGTTTATGGGGATTCAAATGCCAAGTTTGACAAGTTTCAGGATGCATTTTCGATTACAATGAGAAATCTGATGGAGAGGGTCACCAAATTGGATTTAGCTGTATAA

Protein Analysis

580

Amino Acids

66.73

Weight (kDa)

7.55

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 192 - 514 3.6e-80 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012934)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 729
AccB1I GGYRCC 1 cut(s) 729
AccB7I CCANNNNNTGG 1 cut(s) 839
AccI GTMKAC 2 cut(s) 591, 1521
AccII CGCG 1 cut(s) 220
AciI CCGC 2 cut(s) 220, 843
AclWI GGATC 3 cut(s) 449, 782, 1445
AcsI RAATTY 4 cut(s) 25, 952, 1138, 1364
AdeI CACNNNGTG 1 cut(s) 1615
AfaI GTAC 4 cut(s) 259, 677, 731, 746
AfiI CCNNNNNNNGG 6 cut(s) 57, 58, 716, 793, 839, 1284
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 9 cut(s) 40, 109, 275, 330, 434, 781, 871, 1040, 1653
AjnI CCWGG 3 cut(s) 1225, 1381, 1630
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
Alw21I GWGCWC 1 cut(s) 915
Alw26I GTCTC 4 cut(s) 217, 419, 639, 1075
AlwI GGATC 3 cut(s) 449, 782, 1445
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 1 cut(s) 1223
ApeKI GCWGC 4 cut(s) 131, 1217, 1232, 1375
ApoI RAATTY 4 cut(s) 25, 952, 1138, 1364
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
Asp700I GAANNNNTTC 3 cut(s) 705, 821, 1507
Asp718I GGTACC 1 cut(s) 729
AspS9I GGNCC 1 cut(s) 1248
AsuHPI GGTGA 4 cut(s) 72, 710, 1561, 1711
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 1248
BanI GGYRCC 1 cut(s) 729
BanII GRGCYC 2 cut(s) 759, 915
BbsI GAAGAC 2 cut(s) 159, 1155
Bbv12I GWGCWC 1 cut(s) 915
BbvI GCAGC 4 cut(s) 143, 1229, 1244, 1387
BccI CCATC 6 cut(s) 616, 655, 855, 1007, 1140, 1702
BcgI CGANNNNNNTGC 2 cut(s) 661, 695
BciT130I CCWGG 3 cut(s) 1227, 1383, 1632
BciVI GTATCC 1 cut(s) 1485
BclI TGATCA 4 cut(s) 417, 1045, 1257, 1324
BcoDI GTCTC 4 cut(s) 217, 419, 639, 1075
BfaI CTAG 2 cut(s) 1029, 1199
BfmI CTRYAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 1485
BglII AGATCT 1 cut(s) 987
BisI GCNGC 4 cut(s) 132, 1218, 1233, 1376
BlsI GCNGC 4 cut(s) 133, 1219, 1234, 1377
BmcAI AGTACT 2 cut(s) 677, 746
Bme1390I CCNGG 3 cut(s) 1227, 1383, 1632
Bme18I GGWCC 1 cut(s) 1248
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 1248
BmiI GGNNCC 5 cut(s) 63, 472, 654, 731, 756
BmrFI CCNGG 3 cut(s) 1227, 1383, 1632
BmsI GCATC 2 cut(s) 1492, 1669
BpiI GAAGAC 2 cut(s) 159, 1155
BpmI CTGGAG 1 cut(s) 1365
BpuEI CTTGAG 1 cut(s) 947
BsaAI YACGTR 1 cut(s) 595
BsaBI GATNNNNATC 1 cut(s) 416
BsaJI CCNNGG 3 cut(s) 656, 1088, 1478
BsaXI ACNNNNNCTCC 4 cut(s) 291, 321, 579, 609
Bsc4I CCNNNNNNNGG 6 cut(s) 57, 58, 716, 793, 839, 1284
Bse1I ACTGG 2 cut(s) 458, 1264
Bse3DI GCAATG 3 cut(s) 96, 1160, 1172
Bse8I GATNNNNATC 1 cut(s) 416
BseBI CCWGG 3 cut(s) 1227, 1383, 1632
BseDI CCNNGG 3 cut(s) 656, 1088, 1478
BseGI GGATG 6 cut(s) 608, 666, 1117, 1132, 1600, 1684
BseJI GATNNNNATC 1 cut(s) 416
BseLI CCNNNNNNNGG 6 cut(s) 57, 58, 716, 793, 839, 1284
BseMI GCAATG 3 cut(s) 96, 1160, 1172
BseMII CTCAG 3 cut(s) 301, 848, 1335
BseNI ACTGG 2 cut(s) 458, 1264
BseRI GAGGAG 2 cut(s) 600, 1618
BseXI GCAGC 4 cut(s) 143, 1229, 1244, 1387
BsgI GTGCAG 2 cut(s) 1236, 1251
Bsh1236I CGCG 1 cut(s) 220
BshFI GGCC 1 cut(s) 1225
BshNI GGYRCC 1 cut(s) 729
BsiHKAI GWGCWC 1 cut(s) 915
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 3 cut(s) 346, 360, 1039
BslI CCNNNNNNNGG 6 cut(s) 57, 58, 716, 793, 839, 1284
BsmAI GTCTC 4 cut(s) 217, 419, 639, 1075
BsmFI GGGAC 3 cut(s) 346, 360, 1039
BsnI GGCC 1 cut(s) 1225
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 759, 915
Bsp19I CCATGG 3 cut(s) 656, 1088, 1478
BspACI CCGC 2 cut(s) 220, 843
BspANI GGCC 1 cut(s) 1225
BspCNI CTCAG 3 cut(s) 300, 849, 1336
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 5 cut(s) 63, 472, 654, 731, 756
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 3 cut(s) 449, 782, 1445
BspT107I GGYRCC 1 cut(s) 729
BsrDI GCAATG 3 cut(s) 96, 1160, 1172
BsrI ACTGG 2 cut(s) 458, 1264
BssECI CCNNGG 3 cut(s) 656, 1088, 1478
BssT1I CCWWGG 3 cut(s) 656, 1088, 1478
Bst2UI CCWGG 3 cut(s) 1227, 1383, 1632
Bst4CI ACNGT 4 cut(s) 374, 430, 803, 1307
Bst6I CTCTTC 2 cut(s) 486, 577
BstBAI YACGTR 1 cut(s) 595
BstC8I GCNNGC 1 cut(s) 1373
BstDEI CTNAG 6 cut(s) 287, 530, 857, 948, 1344, 1581
BstDSI CCRYGG 3 cut(s) 656, 1088, 1478
BstEII GGTNACC 1 cut(s) 1717
BstF5I GGATG 6 cut(s) 608, 666, 1117, 1132, 1600, 1684
BstFNI CGCG 1 cut(s) 220
BstMAI GTCTC 4 cut(s) 217, 419, 639, 1075
BstMWI GCNNNNNNNGC 3 cut(s) 535, 931, 1217
BstNI CCWGG 3 cut(s) 1227, 1383, 1632
BstPI GGTNACC 1 cut(s) 1717
BstSCI CCNGG 3 cut(s) 1225, 1381, 1630
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 4 cut(s) 143, 1229, 1244, 1387
BstV2I GAAGAC 2 cut(s) 159, 1155
BstX2I RGATCY 2 cut(s) 774, 987
BstYI RGATCY 2 cut(s) 774, 987
BsuI GTATCC 1 cut(s) 1485
BsuRI GGCC 1 cut(s) 1225
BtgI CCRYGG 3 cut(s) 656, 1088, 1478
BtsCI GGATG 6 cut(s) 608, 666, 1117, 1132, 1600, 1684
BtsIMutI CAGTG 4 cut(s) 465, 808, 1271, 1341
Cac8I GCNNGC 1 cut(s) 1373
Cfr13I GGNCC 1 cut(s) 1248
Csp6I GTAC 4 cut(s) 258, 676, 730, 745
CviQI GTAC 4 cut(s) 258, 676, 730, 745
DdeI CTNAG 6 cut(s) 287, 530, 857, 948, 1344, 1581
DraIII CACNNNGTG 1 cut(s) 1615
Eam1104I CTCTTC 2 cut(s) 486, 577
EarI CTCTTC 2 cut(s) 486, 577
Ecl136II GAGCTC 1 cut(s) 913
Eco130I CCWWGG 3 cut(s) 656, 1088, 1478
Eco147I AGGCCT 1 cut(s) 1225
Eco24I GRGCYC 2 cut(s) 759, 915
Eco32I GATATC 2 cut(s) 348, 552
Eco47I GGWCC 1 cut(s) 1248
Eco53kI GAGCTC 1 cut(s) 913
Eco88I CYCGRG 1 cut(s) 322
Eco91I GGTNACC 1 cut(s) 1717
EcoICRI GAGCTC 1 cut(s) 913
EcoO65I GGTNACC 1 cut(s) 1717
EcoRI GAATTC 3 cut(s) 952, 1138, 1364
EcoRII CCWGG 3 cut(s) 1225, 1381, 1630
EcoRV GATATC 2 cut(s) 348, 552
EcoT14I CCWWGG 3 cut(s) 656, 1088, 1478
EcoT22I ATGCAT 1 cut(s) 1684
EcoT38I GRGCYC 2 cut(s) 759, 915
ErhI CCWWGG 3 cut(s) 656, 1088, 1478
FalI AAGNNNNNCTT 4 cut(s) 49, 81, 804, 836
FaqI GGGAC 3 cut(s) 346, 360, 1039
FbaI TGATCA 4 cut(s) 417, 1045, 1257, 1324
FblI GTMKAC 2 cut(s) 591, 1521
Fnu4HI GCNGC 4 cut(s) 132, 1218, 1233, 1376
FokI GGATG 6 cut(s) 595, 673, 1104, 1119, 1607, 1691
FriOI GRGCYC 2 cut(s) 759, 915
Fsp4HI GCNGC 4 cut(s) 132, 1218, 1233, 1376
FspBI CTAG 2 cut(s) 1029, 1199
GluI GCNGC 4 cut(s) 132, 1218, 1233, 1376
GsuI CTGGAG 1 cut(s) 1365
HaeIII GGCC 1 cut(s) 1225
HapII CCGG 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 8 cut(s) 449, 588, 706, 938, 1110, 1358, 1415, 1649
HpaII CCGG 1 cut(s) 189
HphI GGTGA 4 cut(s) 72, 710, 1561, 1711
Hpy166II GTNNAC 4 cut(s) 592, 701, 799, 1522
Hpy188I TCNGA 7 cut(s) 422, 454, 858, 1137, 1144, 1363, 1707
Hpy188III TCNNGA 8 cut(s) 317, 343, 682, 778, 871, 1072, 1078, 1676
Hpy8I GTNNAC 4 cut(s) 592, 701, 799, 1522
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 4 cut(s) 505, 563, 572, 1540
HpyCH4III ACNGT 4 cut(s) 374, 430, 803, 1307
HpyCH4IV ACGT 1 cut(s) 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 535, 931, 1217
HpyF3I CTNAG 6 cut(s) 287, 530, 857, 948, 1344, 1581
HpySE526I ACGT 1 cut(s) 594
KpnI GGTACC 1 cut(s) 733
Ksp22I TGATCA 4 cut(s) 417, 1045, 1257, 1324
LmnI GCTCC 3 cut(s) 470, 754, 910
Lsp1109I GCAGC 4 cut(s) 143, 1229, 1244, 1387
LweI GCATC 2 cut(s) 1492, 1669
MaeI CTAG 2 cut(s) 1029, 1199
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 3 cut(s) 1292, 1339, 1717
MflI RGATCY 2 cut(s) 774, 987
MhlI GDGCHC 2 cut(s) 759, 915
MluCI AATT 8 cut(s) 25, 268, 952, 1041, 1138, 1364, 1422, 1724
MlyI GAGTC 4 cut(s) 458, 597, 932, 1367
MmeI TCCRAC 1 cut(s) 1145
Mph1103I ATGCAT 1 cut(s) 1684
MroXI GAANNNNTTC 3 cut(s) 705, 821, 1507
MseI TTAA 2 cut(s) 618, 1421
MslI CAYNNNNRTG 2 cut(s) 207, 1165
MspA1I CMGCKG 1 cut(s) 1235
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 3 cut(s) 1227, 1383, 1632
MvaI CCWGG 3 cut(s) 1227, 1383, 1632
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 3 cut(s) 535, 931, 1217
NcoI CCATGG 3 cut(s) 656, 1088, 1478
NlaIV GGNNCC 5 cut(s) 63, 472, 654, 731, 756
NmuCI GTSAC 3 cut(s) 1292, 1339, 1717
NsiI ATGCAT 1 cut(s) 1684
PceI AGGCCT 1 cut(s) 1225
PdmI GAANNNNTTC 3 cut(s) 705, 821, 1507
PfeI GAWTC 4 cut(s) 706, 1110, 1415, 1649
PflMI CCANNNNNTGG 1 cut(s) 839
PfoI TCCNGGA 1 cut(s) 1381
PkrI GCNGC 4 cut(s) 133, 1219, 1234, 1377
PleI GAGTC 4 cut(s) 457, 596, 932, 1366
PpsI GAGTC 4 cut(s) 457, 596, 932, 1366
Ppu21I YACGTR 1 cut(s) 595
Psp124BI GAGCTC 1 cut(s) 915
Psp6I CCWGG 3 cut(s) 1225, 1381, 1630
PspEI GGTNACC 1 cut(s) 1717
PspGI CCWGG 3 cut(s) 1225, 1381, 1630
PspN4I GGNNCC 5 cut(s) 63, 472, 654, 731, 756
PspPI GGNCC 1 cut(s) 1248
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 2 cut(s) 774, 987
PvuII CAGCTG 1 cut(s) 1235
RsaI GTAC 4 cut(s) 259, 677, 731, 746
RsaNI GTAC 4 cut(s) 258, 676, 730, 745
RseI CAYNNNNRTG 2 cut(s) 207, 1165
SacI GAGCTC 1 cut(s) 915
SaqAI TTAA 2 cut(s) 618, 1421
SatI GCNGC 4 cut(s) 132, 1218, 1233, 1376
Sau96I GGNCC 1 cut(s) 1248
ScaI AGTACT 2 cut(s) 677, 746
SchI GAGTC 4 cut(s) 458, 597, 932, 1367
ScrFI CCNGG 3 cut(s) 1227, 1383, 1632
SduI GDGCHC 2 cut(s) 759, 915
SfaNI GCATC 2 cut(s) 1492, 1669
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 1 cut(s) 1248
SmiMI CAYNNNNRTG 2 cut(s) 207, 1165
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 8 cut(s) 25, 268, 952, 1041, 1138, 1364, 1422, 1724
SseBI AGGCCT 1 cut(s) 1225
SsiI CCGC 2 cut(s) 220, 843
SspMI CTAG 2 cut(s) 1029, 1199
SstI GAGCTC 1 cut(s) 915
StuI AGGCCT 1 cut(s) 1225
StyD4I CCNGG 3 cut(s) 1225, 1381, 1630
StyI CCWWGG 3 cut(s) 656, 1088, 1478
TaaI ACNGT 4 cut(s) 374, 430, 803, 1307
TaiI ACGT 1 cut(s) 597
TaqI TCGA 8 cut(s) 17, 344, 519, 1077, 1399, 1413, 1449, 1688
TasI AATT 8 cut(s) 25, 268, 952, 1041, 1138, 1364, 1422, 1724
TatI WGTACW 2 cut(s) 675, 744
TfiI GAWTC 4 cut(s) 706, 1110, 1415, 1649
Tru1I TTAA 2 cut(s) 618, 1421
Tru9I TTAA 2 cut(s) 618, 1421
TscAI CASTG 4 cut(s) 465, 808, 1271, 1348
TseFI GTSAC 3 cut(s) 1292, 1339, 1717
TseI GCWGC 4 cut(s) 131, 1217, 1232, 1375
Tsp45I GTSAC 3 cut(s) 1292, 1339, 1717
TspDTI ATGAA 7 cut(s) 85, 191, 582, 825, 1342, 1559, 1586
TspRI CASTG 4 cut(s) 465, 808, 1271, 1348
Van91I CCANNNNNTGG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 1248
XapI RAATTY 4 cut(s) 25, 952, 1138, 1364
XmiI GTMKAC 2 cut(s) 591, 1521
XmnI GAANNNNTTC 3 cut(s) 705, 821, 1507
XspI CTAG 2 cut(s) 1029, 1199
ZrmI AGTACT 2 cut(s) 677, 746
Zsp2I ATGCAT 1 cut(s) 1684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.