Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013516

Physical Location & Seq

Genomic Coordinates Reverse (-)

22365353 .. 22368660

Gene Structure 3308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGTGCTTTCAGAGTTCTAAGCAAGTCCCTGAGACATTACACACCCAAAGCCTCTATATTTCCAGAGAATTCAATCACTCCCAGGCCCAACAAATGGCTTTGCCGGACTCTGATTCTAGAGTCAGCACCCTCTCAGTCCGTCAACCTCCACAGGCTCTCCGACTCCGATTCCGGAATCGTTGAAGTTAGTTTGGAGAGACCCCAAGTGAGAAATGCAATAGGGAAAGATATGCTCAAAGGTTTGCAGAACACGTTTGAAGCTATCAGTAAAGATTCATCTGCTAATGTTTTGTTGATCCGCAGTAAAGTTCCCAAGGTGTTCTGTGCAGGAGCAGATTTGAAGGAACGCAAGATGATGAGTGCAACTGAGGTTCAAGATTTCGTGAACAAGCTGCGTGCCACATTCTCATTTCTAGAGGTACTTCCCATTCCTACCATCGCTGTCATTGAAGGGGCAGCATTGGGTGGTGGACTTGAAATGGCTTTATCATGCGATCTTCGGATATGTGGAGAAGATGCAGTATTGGGATTGCCAGAAACTGGACTTGCTATAATTCCCGGGGCAGGTGGGACTCAACGACTTCCTAGAGTGGTTGGAAGATCAATAGCAAAGGAACTCATATTGACTGGGAGGAAGATTGGTGGCAGAGAAGCAATGTCAATGGGTCTGGTAAATTACTGTGTCCATGCTGGTGAAGCTTATCTAAAGGCACTTGAAGTTGCTCGCAATATAAATGAGAAGGGTCCAATAGCAATAAGGATGGCGAAAAGAGCTATTGACCAGGGACTTGAGGTAGATAGGGCATCAGCTTTGGCACTGGAAGAAGAATGCTATGAGCAGACCTTGCACACAGAAGATCGTTTGGAAGCCCTGGCAGCATTTGCTGAGAAGCGGAAGCCAAGGTATACTGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

ECH_1

Protein Analysis

306

Amino Acids

33.3

Weight (kDa)

8.98

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	57 - 305	2.8e-61	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	63 - 232	7.4e-32	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16800
fragaria_vesca	FvH4_5g19890
malus_domestica	MD04G1057400.v1.1
prunus_persica	Prupe.5G061300_v2.0.a1 Prupe.5G061300_v2.0.a1
pyrus_communis	pycom04g05100
rosa_chinensis	RchiOBHm_Chr7g0204691
rosa_laevigata	RLG00000003437
rosa_multiflora	Rmu_sc0003221.1_g000066 Rmu_sc0007104.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252860
rosa_rugosa	Rorug07G0085700 Rorug07G0085800
rosa_samantha	Rh7AG215600 Rh7BG212800 Rh7CG228700 Rh7DG223300
rosa_wichuraiana	Rw7G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	557
Acc36I	ACCTGC	1 cut(s)	557
AccB7I	CCANNNNNTGG	2 cut(s)	96, 542
AccI	GTMKAC	1 cut(s)	908
AccIII	TCCGGA	1 cut(s)	173
AciI	CCGC	2 cut(s)	301, 895
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	70
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	3 cut(s)	96, 542, 566
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	8 cut(s)	75, 185, 260, 343, 377, 452, 479, 719
AjnI	CCWGG	3 cut(s)	83, 783, 873
AluBI	AGCT	5 cut(s)	263, 394, 701, 776, 812
AluI	AGCT	5 cut(s)	263, 394, 701, 776, 812
Alw26I	GTCTC	2 cut(s)	28, 193
AlwI	GGATC	1 cut(s)	292
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	560
Aor13HI	TCCGGA	1 cut(s)	173
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	394, 458, 878
ApoI	RAATTY	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	87, 746
AsuC2I	CCSGG	2 cut(s)	561, 562
AsuHPI	GGTGA	1 cut(s)	707
AvaI	CYCGRG	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	746
BbvI	GCAGC	3 cut(s)	381, 470, 890
BccI	CCATC	2 cut(s)	446, 757
BciT130I	CCWGG	3 cut(s)	85, 785, 875
BcnI	CCSGG	2 cut(s)	561, 562
BcoDI	GTCTC	2 cut(s)	28, 193
BfaI	CTAG	3 cut(s)	119, 416, 588
BfuAI	ACCTGC	1 cut(s)	557
BisI	GCNGC	3 cut(s)	395, 459, 879
BlsI	GCNGC	3 cut(s)	396, 460, 880
Bme1390I	CCNGG	5 cut(s)	85, 561, 562, 785, 875
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	1 cut(s)	560
BmgT120I	GGNCC	2 cut(s)	87, 746
BmiI	GGNNCC	1 cut(s)	747
BmrFI	CCNGG	5 cut(s)	85, 561, 562, 785, 875
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	2 cut(s)	508, 815
BmuI	ACTGGG	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	2 cut(s)	561, 562
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	7 cut(s)	83, 315, 560, 561, 784, 873, 902
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 542, 566
Bse1I	ACTGG	4 cut(s)	547, 634, 825, 916
Bse3DI	GCAATG	1 cut(s)	663
BseAI	TCCGGA	1 cut(s)	173
BseBI	CCWGG	3 cut(s)	85, 785, 875
BseDI	CCNNGG	7 cut(s)	83, 315, 560, 561, 784, 873, 902
BseGI	GGATG	1 cut(s)	768
BseLI	CCNNNNNNNGG	3 cut(s)	96, 542, 566
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	4 cut(s)	23, 149, 360, 879
BseNI	ACTGG	4 cut(s)	547, 634, 825, 916
BseXI	GCAGC	3 cut(s)	381, 470, 890
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	106, 174, 561
BslFI	GGGAC	3 cut(s)	13, 586, 801
BslI	CCNNNNNNNGG	3 cut(s)	96, 542, 566
BsmAI	GTCTC	2 cut(s)	28, 193
BsmFI	GGGAC	3 cut(s)	13, 586, 801
BsmI	GAATGC	1 cut(s)	836
BsnI	GGCC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	560
Bsp13I	TCCGGA	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	297, 496, 602, 859
BspACI	CCGC	2 cut(s)	301, 895
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	4 cut(s)	24, 148, 361, 880
BspEI	TCCGGA	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	747
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	663
BsrI	ACTGG	4 cut(s)	547, 634, 825, 916
BssECI	CCNNGG	7 cut(s)	83, 315, 560, 561, 784, 873, 902
BssMI	GATC	4 cut(s)	297, 496, 602, 859
BssNAI	GTATAC	1 cut(s)	909
BssT1I	CCWWGG	2 cut(s)	315, 902
Bst1107I	GTATAC	1 cut(s)	909
Bst2UI	CCWGG	3 cut(s)	85, 785, 875
Bst4CI	ACNGT	1 cut(s)	683
BstAPI	GCANNNNNTGC	2 cut(s)	847, 884
BstC8I	GCNNGC	2 cut(s)	399, 727
BstDEI	CTNAG	5 cut(s)	20, 32, 135, 369, 888
BstF5I	GGATG	1 cut(s)	768
BstKTI	GATC	4 cut(s)	300, 499, 605, 862
BstMAI	GTCTC	2 cut(s)	28, 193
BstMBI	GATC	4 cut(s)	297, 496, 602, 859
BstMWI	GCNNNNNNNGC	5 cut(s)	698, 773, 847, 878, 884
BstNI	CCWGG	3 cut(s)	85, 785, 875
BstSCI	CCNGG	5 cut(s)	83, 559, 560, 783, 873
BstV1I	GCAGC	3 cut(s)	381, 470, 890
BstZ17I	GTATAC	1 cut(s)	909
BsuRI	GGCC	1 cut(s)	88
BtgZI	GCGATG	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	768
BtsIMutI	CAGTG	1 cut(s)	818
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	2 cut(s)	399, 727
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	87, 746
Cfr9I	CCCGGG	1 cut(s)	560
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	2 cut(s)	492, 689
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	5 cut(s)	20, 32, 135, 369, 888
DpnI	GATC	4 cut(s)	299, 498, 604, 861
DpnII	GATC	4 cut(s)	297, 496, 602, 859
Eco130I	CCWWGG	2 cut(s)	315, 902
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	746
Eco88I	CYCGRG	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	3 cut(s)	83, 783, 873
EcoT14I	CCWWGG	2 cut(s)	315, 902
ErhI	CCWWGG	2 cut(s)	315, 902
FaeI	CATG	2 cut(s)	495, 692
FaqI	GGGAC	3 cut(s)	13, 586, 801
FatI	CATG	2 cut(s)	491, 688
FblI	GTMKAC	1 cut(s)	908
Fnu4HI	GCNGC	3 cut(s)	395, 459, 879
FokI	GGATG	1 cut(s)	775
Fsp4HI	GCNGC	3 cut(s)	395, 459, 879
FspBI	CTAG	3 cut(s)	119, 416, 588
GluI	GCNGC	3 cut(s)	395, 459, 879
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	3 cut(s)	106, 174, 561
Hin1II	CATG	2 cut(s)	495, 692
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	8 cut(s)	109, 115, 122, 164, 170, 177, 275, 574
HpaII	CCGG	3 cut(s)	106, 174, 561
HphI	GGTGA	1 cut(s)	707
Hpy166II	GTNNAC	4 cut(s)	145, 388, 473, 909
Hpy188I	TCNGA	5 cut(s)	14, 114, 163, 169, 504
Hpy188III	TCNNGA	6 cut(s)	65, 119, 174, 377, 385, 416
Hpy8I	GTNNAC	4 cut(s)	145, 388, 473, 909
HpyAV	CCTTC	3 cut(s)	337, 446, 736
HpyCH4III	ACNGT	1 cut(s)	683
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	6 cut(s)	218, 247, 329, 365, 521, 850
HpyF10VI	GCNNNNNNNGC	5 cut(s)	698, 773, 847, 878, 884
HpyF3I	CTNAG	5 cut(s)	20, 32, 135, 369, 888
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	495, 692
Kpn2I	TCCGGA	1 cut(s)	173
Kzo9I	GATC	4 cut(s)	297, 496, 602, 859
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	3 cut(s)	381, 470, 890
LweI	GCATC	2 cut(s)	508, 815
MaeI	CTAG	3 cut(s)	119, 416, 588
MaeII	ACGT	1 cut(s)	254
MalI	GATC	4 cut(s)	299, 498, 604, 861
MboI	GATC	4 cut(s)	297, 496, 602, 859
MboII	GAAGA	7 cut(s)	491, 527, 612, 649, 836, 839, 869
MluCI	AATT	3 cut(s)	70, 555, 676
MlyI	GAGTC	4 cut(s)	103, 131, 158, 568
MmeI	TCCRAC	2 cut(s)	186, 577
MnlI	CCTC	7 cut(s)	64, 142, 158, 364, 412, 627, 787
MroI	TCCGGA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	693
MspI	CCGG	3 cut(s)	106, 174, 561
MspR9I	CCNGG	5 cut(s)	85, 561, 562, 785, 875
Mva1269I	GAATGC	1 cut(s)	836
MvaI	CCWGG	3 cut(s)	85, 785, 875
MwoI	GCNNNNNNNGC	5 cut(s)	698, 773, 847, 878, 884
NciI	CCSGG	2 cut(s)	561, 562
NdeII	GATC	4 cut(s)	297, 496, 602, 859
NlaIII	CATG	2 cut(s)	495, 692
NlaIV	GGNNCC	1 cut(s)	747
PaqCI	CACCTGC	1 cut(s)	557
PctI	GAATGC	1 cut(s)	836
PfeI	GAWTC	4 cut(s)	115, 170, 177, 275
PflMI	CCANNNNNTGG	2 cut(s)	96, 542
PkrI	GCNGC	3 cut(s)	396, 460, 880
PleI	GAGTC	4 cut(s)	103, 130, 158, 568
PpsI	GAGTC	4 cut(s)	103, 130, 158, 568
Psp6I	CCWGG	3 cut(s)	83, 783, 873
PspGI	CCWGG	3 cut(s)	83, 783, 873
PspN4I	GGNNCC	1 cut(s)	747
PspPI	GGNCC	2 cut(s)	87, 746
PstNI	CAGNNNCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	693
SatI	GCNGC	3 cut(s)	395, 459, 879
Sau3AI	GATC	4 cut(s)	297, 496, 602, 859
Sau96I	GGNCC	2 cut(s)	87, 746
SchI	GAGTC	4 cut(s)	103, 131, 158, 568
ScrFI	CCNGG	5 cut(s)	85, 561, 562, 785, 875
SfaNI	GCATC	2 cut(s)	508, 815
SinI	GGWCC	1 cut(s)	746
SmaI	CCCGGG	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	3 cut(s)	70, 555, 676
SsiI	CCGC	2 cut(s)	301, 895
SspMI	CTAG	3 cut(s)	119, 416, 588
StyD4I	CCNGG	5 cut(s)	83, 559, 560, 783, 873
StyI	CCWWGG	2 cut(s)	315, 902
TaaI	ACNGT	1 cut(s)	683
TaiI	ACGT	1 cut(s)	257
TasI	AATT	3 cut(s)	70, 555, 676
TfiI	GAWTC	4 cut(s)	115, 170, 177, 275
TscAI	CASTG	1 cut(s)	825
TseI	GCWGC	3 cut(s)	394, 458, 878
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	130
TspMI	CCCGGG	1 cut(s)	560
TspRI	CASTG	1 cut(s)	825
Van91I	CCANNNNNTGG	2 cut(s)	96, 542
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	1 cut(s)	70
XbaI	TCTAGA	2 cut(s)	118, 415
XmaI	CCCGGG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	908
XspI	CTAG	3 cut(s)	119, 416, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.