RchiOBHm_Chr7g0222631

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013457
Physical Location & Seq
Reverse (-)
44167837 .. 44169016
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1011 bp
ATGTCGTCGTCATTGGTTCGTCCTCGTCCTCGAGTTATGGTCAATGGAATAAGAAGAATGAGAACCTTTCGTTTCTTCTGGTGCCGCCATTGCCAACATACTGTAAGAATTGCCTCTTCCAACCCATATGGATTTCAATGTCACTGTTGCTCCAATGAGCTGAATCATGAGCTCGATGTATTGAGGCCTGCTGCCTCTATCAATAACTACCTTCAATCCGTAGAACCTTCCCCGGCTGCCCGCTTACTTCAAAACCTAGCTCTCGTCCTCGATCCTTCCCCTCTGAGGCACCATGGACGACTTCGATGGCAAATCGAAACCGACAATGAGCCAGTTGATCATCCACGGTCTTGGATCACCCTCCAGTTCGAGAGACCGCCAAGACTTGTAGTTCCCGTACCACAAAATGCCACCATCGACGAGGATCATACTAATAACGCTGCTACTTTCGTGGGAACAATAAACGAGGTTCCGAATGAGCGTCGGGGGCCATCACCGGCGCCCAGTTGGGCAATCGAAGGATTGCCTACGGTGAAAGTCACGGAAGAGGGGTTGGTGAAGGAACCCGGTTGCCCGGTTTGCAAGGAAGGGTTTGTGGTTGGTGGAGAAGTAAGAGAAATGCCATGCAAGCATGTGTATCATTCTGGTTGCATAGTCCCTTGGCTGAGCTTACACAATACTTGTCCAGTTTGCCGATATGAACTAAATAATGGGATCGATCAGTTTGGAGATCGTAATGAAAATTATTACGCAGAGGAGGAAGAAGAGGTGACGTCACGACACCGATATGAACTAAATAATGGGATCGATCAGTTTGGAGATCGTAATGAAAATTATTACGCAGAGGAGGAAGAAGAGGTGACGTCACGACATTGGTGGTGGAATCAGTTTCTTTCCTTCTGGCCATTTCGTGCATTAGTTCATTATTGGAGACAAACTCACCTTGATAACCAAGCAAGGCGTCAAGAACCCGGTGGTCCTCGATCTTGGATCGTTCTATTACTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

336

Amino Acids

39.08

Weight (kDa)

6.11

Isoelectric Point (pI)

63.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 191 - 232 1.3e-12 Ring finger domain
zf-C3HC4_2 PF13923 191 - 231 5.7e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 191 - 218 3.9e-07 RING-like zinc finger
zf-C3HC4 PF00097 191 - 231 9.6e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68180
fragaria_vesca FvH4_5g29600 FvH4_5g29600
malus_domestica MD08G1228300.v1.1 MD15G1422200.v1.1
prunus_persica Prupe.1G567500_v2.0.a1 Prupe.1G567500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0222631
rosa_laevigata RLG00000002042
rosa_multiflora Rmu_sc0001498.1_g000010
rosa_roxburghii Rroxscaffold_3G00236580
rosa_rugosa Rorug07G0211600
rosa_samantha Rh7AG355200 Rh7BG343500 Rh7CG372500 Rh7DG349700
rosa_wichuraiana Rw7G029810 Rw7G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 776, 866
AccB1I GGYRCC 3 cut(s) 81, 288, 499
AciI CCGC 3 cut(s) 85, 241, 377
AclWI GGATC 6 cut(s) 266, 362, 432, 722, 812, 998
AcoI YGGCCR 1 cut(s) 902
AcyI GRCGYC 4 cut(s) 500, 773, 863, 961
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 3 cut(s) 137, 215, 251
AluBI AGCT 4 cut(s) 160, 172, 260, 669
AluI AGCT 4 cut(s) 160, 172, 260, 669
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 367, 925
AlwI GGATC 6 cut(s) 266, 362, 432, 722, 812, 998
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 3 cut(s) 185, 488, 902
ApeKI GCWGC 3 cut(s) 191, 236, 440
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 2 cut(s) 488, 977
AsuC2I CCSGG 4 cut(s) 233, 567, 575, 972
AsuHPI GGTGA 7 cut(s) 349, 486, 544, 568, 781, 871, 932
AvaI CYCGRG 1 cut(s) 30
AvaII GGWCC 1 cut(s) 977
BalI TGGCCA 1 cut(s) 904
BanI GGYRCC 3 cut(s) 81, 288, 499
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 178, 223, 427
BccI CCATC 3 cut(s) 300, 422, 499
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 4 cut(s) 233, 567, 575, 972
BcoDI GTCTC 2 cut(s) 367, 925
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 1007
BfoI RGCGCY 1 cut(s) 503
BisI GCNGC 4 cut(s) 85, 192, 237, 441
BlpI GCTNAGC 1 cut(s) 665
BlsI GCNGC 4 cut(s) 86, 193, 238, 442
Bme1390I CCNGG 4 cut(s) 233, 567, 575, 972
Bme18I GGWCC 1 cut(s) 977
BmeT110I CYCGRG 1 cut(s) 30
BmgT120I GGNCC 2 cut(s) 488, 977
BmiI GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
BmrFI CCNGG 4 cut(s) 233, 567, 575, 972
BmrI ACTGGG 1 cut(s) 498
BmuI ACTGGG 1 cut(s) 498
BplI GAGNNNNNCTC 2 cut(s) 922, 954
BpmI CTGGAG 1 cut(s) 347
Bpu1102I GCTNAGC 1 cut(s) 665
BpuMI CCSGG 4 cut(s) 233, 567, 575, 972
Bsa29I ATCGAT 2 cut(s) 717, 807
BsaHI GRCGYC 4 cut(s) 500, 773, 863, 961
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 4 cut(s) 231, 292, 344, 659
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 4 cut(s) 332, 364, 504, 686
Bse3DI GCAATG 1 cut(s) 88
BseCI ATCGAT 2 cut(s) 717, 807
BseDI CCNNGG 4 cut(s) 231, 292, 344, 659
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 275, 656
BseNI ACTGG 4 cut(s) 332, 364, 504, 686
BseRI GAGGAG 2 cut(s) 770, 860
BseXI GCAGC 3 cut(s) 178, 223, 427
BshFI GGCC 3 cut(s) 187, 490, 904
BshNI GGYRCC 3 cut(s) 81, 288, 499
BshVI ATCGAT 2 cut(s) 717, 807
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 5 cut(s) 233, 497, 567, 575, 972
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 2 cut(s) 367, 925
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 3 cut(s) 187, 490, 904
Bso31I GGTCTC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 174
Bsp1720I GCTNAGC 1 cut(s) 665
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 3 cut(s) 85, 241, 377
BspANI GGCC 3 cut(s) 187, 490, 904
BspCNI CTCAG 2 cut(s) 276, 657
BspDI ATCGAT 2 cut(s) 717, 807
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
BspPI GGATC 6 cut(s) 266, 362, 432, 722, 812, 998
BspT107I GGYRCC 3 cut(s) 81, 288, 499
BspTNI GGTCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 4 cut(s) 332, 364, 504, 686
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 4 cut(s) 231, 292, 344, 659
BssNI GRCGYC 4 cut(s) 500, 773, 863, 961
BssT1I CCWWGG 2 cut(s) 292, 659
Bst4CI ACNGT 4 cut(s) 103, 146, 348, 532
Bst6I CTCTTC 4 cut(s) 121, 540, 759, 849
BstACI GRCGYC 4 cut(s) 500, 773, 863, 961
BstC8I GCNNGC 3 cut(s) 189, 241, 629
BstDEI CTNAG 2 cut(s) 284, 665
BstDSI CCRYGG 2 cut(s) 292, 344
BstF5I GGATG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 1 cut(s) 502
BstMAI GTCTC 2 cut(s) 367, 925
BstMWI GCNNNNNNNGC 4 cut(s) 90, 487, 579, 628
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 4 cut(s) 231, 565, 573, 970
BstSFI CTRYAG 1 cut(s) 1007
BstV1I GCAGC 3 cut(s) 178, 223, 427
BstXI CCANNNNNNTGG 1 cut(s) 351
Bsu15I ATCGAT 2 cut(s) 717, 807
BsuRI GGCC 3 cut(s) 187, 490, 904
BsuTUI ATCGAT 2 cut(s) 717, 807
BtgI CCRYGG 2 cut(s) 292, 344
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 3 cut(s) 189, 241, 629
CciI TCATGA 1 cut(s) 166
CfoI GCGC 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 488, 977
ClaI ATCGAT 2 cut(s) 717, 807
CseI GACGC 2 cut(s) 470, 950
Csp6I GTAC 1 cut(s) 398
CviAII CATG 4 cut(s) 167, 293, 624, 632
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 2 cut(s) 284, 665
DinI GGCGCC 1 cut(s) 501
EaeI YGGCCR 1 cut(s) 902
Eam1104I CTCTTC 4 cut(s) 121, 540, 759, 849
EarI CTCTTC 4 cut(s) 121, 540, 759, 849
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 292, 659
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 977
Eco53kI GAGCTC 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 292, 659
EcoT38I GRGCYC 1 cut(s) 174
EgeI GGCGCC 1 cut(s) 501
EheI GGCGCC 1 cut(s) 501
ErhI CCWWGG 2 cut(s) 292, 659
FaeI CATG 4 cut(s) 170, 296, 627, 635
FaqI GGGAC 1 cut(s) 641
FatI CATG 4 cut(s) 166, 292, 623, 631
FauI CCCGC 1 cut(s) 248
FauNDI CATATG 1 cut(s) 127
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 4 cut(s) 85, 192, 237, 441
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 85, 192, 237, 441
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 501
GluI GCNGC 4 cut(s) 85, 192, 237, 441
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 3 cut(s) 187, 490, 904
HapII CCGG 5 cut(s) 233, 497, 567, 575, 972
HgaI GACGC 2 cut(s) 470, 950
HhaI GCGC 1 cut(s) 502
Hin1I GRCGYC 4 cut(s) 500, 773, 863, 961
Hin1II CATG 4 cut(s) 170, 296, 627, 635
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HinfI GANTC 2 cut(s) 163, 883
HpaII CCGG 5 cut(s) 233, 497, 567, 575, 972
HphI GGTGA 7 cut(s) 349, 486, 544, 568, 781, 871, 932
Hpy188I TCNGA 2 cut(s) 285, 474
Hpy188III TCNNGA 5 cut(s) 167, 370, 777, 867, 965
Hpy99I CGWCG 3 cut(s) 10, 422, 486
HpyAV CCTTC 7 cut(s) 221, 237, 285, 512, 553, 581, 907
HpyCH4III ACNGT 4 cut(s) 103, 146, 348, 532
HpyCH4IV ACGT 2 cut(s) 773, 863
HpyCH4V TGCA 4 cut(s) 582, 627, 651, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 487, 579, 628
HpyF3I CTNAG 2 cut(s) 284, 665
HpySE526I ACGT 2 cut(s) 773, 863
Hsp92I GRCGYC 4 cut(s) 500, 773, 863, 961
Hsp92II CATG 4 cut(s) 170, 296, 627, 635
HspAI GCGC 1 cut(s) 500
KasI GGCGCC 1 cut(s) 499
Ksp22I TGATCA 1 cut(s) 337
LmnI GCTCC 1 cut(s) 155
Lsp1109I GCAGC 3 cut(s) 178, 223, 427
MaeI CTAG 1 cut(s) 257
MaeII ACGT 2 cut(s) 773, 863
MaeIII GTNAC 6 cut(s) 140, 538, 769, 774, 859, 864
MboII GAAGA 8 cut(s) 66, 67, 108, 557, 773, 776, 863, 866
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 904
MluCI AATT 3 cut(s) 108, 742, 832
MluNI TGGCCA 1 cut(s) 904
Mly113I GGCGCC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 904
MscI TGGCCA 1 cut(s) 904
MslI CAYNNNNRTG 1 cut(s) 786
Msp20I TGGCCA 1 cut(s) 904
MspI CCGG 5 cut(s) 233, 497, 567, 575, 972
MspR9I CCNGG 4 cut(s) 233, 567, 575, 972
MwoI GCNNNNNNNGC 4 cut(s) 90, 487, 579, 628
NarI GGCGCC 1 cut(s) 500
NciI CCSGG 4 cut(s) 233, 567, 575, 972
NcoI CCATGG 1 cut(s) 292
NdeI CATATG 1 cut(s) 127
NlaIII CATG 4 cut(s) 170, 296, 627, 635
NlaIV GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
NmuCI GTSAC 6 cut(s) 140, 538, 769, 774, 859, 864
NspI RCATGY 1 cut(s) 635
PaeR7I CTCGAG 1 cut(s) 30
PagI TCATGA 1 cut(s) 166
PceI AGGCCT 1 cut(s) 187
PfeI GAWTC 2 cut(s) 163, 883
PkrI GCNGC 4 cut(s) 86, 193, 238, 442
PluTI GGCGCC 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 174
PspN4I GGNNCC 6 cut(s) 83, 290, 471, 489, 501, 564
PspPI GGNCC 2 cut(s) 488, 977
PspXI VCTCGAGB 1 cut(s) 30
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 786
SacI GAGCTC 1 cut(s) 174
SatI GCNGC 4 cut(s) 85, 192, 237, 441
Sau96I GGNCC 2 cut(s) 488, 977
ScrFI CCNGG 4 cut(s) 233, 567, 575, 972
SduI GDGCHC 1 cut(s) 174
SfcI CTRYAG 1 cut(s) 1007
SfoI GGCGCC 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 496
SinI GGWCC 1 cut(s) 977
SlaI CTCGAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 786
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 3 cut(s) 108, 742, 832
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 3 cut(s) 85, 241, 377
SspDI GGCGCC 1 cut(s) 499
SspMI CTAG 1 cut(s) 257
SstI GAGCTC 1 cut(s) 174
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 4 cut(s) 231, 565, 573, 970
StyI CCWWGG 2 cut(s) 292, 659
TaaI ACNGT 4 cut(s) 103, 146, 348, 532
TaiI ACGT 2 cut(s) 776, 866
TasI AATT 3 cut(s) 108, 742, 832
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 2 cut(s) 163, 883
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 6 cut(s) 140, 538, 769, 774, 859, 864
TseI GCWGC 3 cut(s) 191, 236, 440
Tsp45I GTSAC 6 cut(s) 140, 538, 769, 774, 859, 864
TspDTI ATGAA 5 cut(s) 714, 753, 804, 843, 911
TspGWI ACGGA 2 cut(s) 208, 557
TspRI CASTG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 977
XceI RCATGY 1 cut(s) 635
XhoI CTCGAG 1 cut(s) 30
XspI CTAG 1 cut(s) 257
ZraI GACGTC 2 cut(s) 774, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.