Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017498

Physical Location & Seq

Genomic Coordinates Forward (+)

52246789 .. 52247458

Gene Structure 670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGGGAGCGAGGGGTTAAGAAAGAACCTGGTTGTAGTTGGATTGACGTTGAAAATATGGTCCATGTCTTCTTGGTTGGTGATACTGTGCACCCTGAGGTAAATGAGGTGTACAGGTATCTAGAGCAACTGGTTCTTAAAATGAGGAAGTTAGGATATGCTCCTGACACAAAGTTTGCGTTGCATGATATGGAGTCTGAGCATAAGGAGAATTCCTTGTCTACTCACAGTGAGAAGCTTGCAGTTGCATTTGGGATCATGAAGCTTCCTCTTGGAGCCACAATTAGAGTTTTTAAGAATCTTAGGATCTGTGGGGATTGCCATAATGCATTTAAGTATGTGTCAAGAGTGGTTGGAAGAGAGATAGCTGTGAGAGACGCCAAGAGGTTTCATCATTTTAGGAACGGCGAATGCTCTTGTGGAAATTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

144

Amino Acids

16.64

Weight (kDa)

8.83

Isoelectric Point (pI)

24.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	52 - 144	1.9e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47580
rosa_chinensis	RchiOBHm_Chr7g0228911 RchiOBHm_Chr7g0228971
rosa_laevigata	RLG00000014707
rosa_multiflora	Rmu_co7960547.1_g000001 Rmu_sc0000271.1_g000046 Rmu_sc0000721.1_g000004 Rmu_sc0000853.1_g000012 Rmu_sc0005913.1_g000008 Rmu_sc0018744.1_g000001 Rmu_ssc0000018.1_g000051
rosa_rugosa	Rorug07G0253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	221
AclWI	GGATC	2 cut(s)	263, 314
AcsI	RAATTY	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	3 cut(s)	238, 265, 368
AluI	AGCT	3 cut(s)	238, 265, 368
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	369
Alw44I	GTGCAC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	263, 314
ApaLI	GTGCAC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	211
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	61
AxyI	CCTNAGG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	93
BceAI	ACGGC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	378
Bse1I	ACTGG	2 cut(s)	135, 434
Bse21I	CCTNAGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	87, 189
BseNI	ACTGG	2 cut(s)	135, 434
BseSI	GKGCMC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	369
BsmBI	CGTCTC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	255, 306
BspCNI	CTCAG	2 cut(s)	88, 190
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	263, 314
BsrGI	TGTACA	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	135, 434
BssMI	GATC	2 cut(s)	255, 306
BssNI	GRCGYC	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	88, 230
Bst6I	CTCTTC	1 cut(s)	352
BstACI	GRCGYC	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	3 cut(s)	96, 198, 302
BstKTI	GATC	2 cut(s)	258, 309
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	2 cut(s)	255, 306
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
Bsu36I	CCTNAGG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	240
CciI	TCATGA	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	1 cut(s)	386
CsiI	ACCWGGT	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	3 cut(s)	65, 185, 259
CviJI	RGCY	4 cut(s)	238, 265, 278, 368
CviKI_1	RGCY	4 cut(s)	238, 265, 278, 368
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	3 cut(s)	96, 198, 302
DpnI	GATC	2 cut(s)	257, 308
DpnII	GATC	2 cut(s)	255, 306
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	61
Eco81I	CCTNAGG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	3 cut(s)	68, 188, 262
FaiI	YATR	9 cut(s)	59, 66, 159, 186, 191, 204, 260, 324, 339
FatI	CATG	3 cut(s)	64, 184, 258
FblI	GTMKAC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	386
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	68, 188, 262
HindIII	AAGCTT	2 cut(s)	236, 263
HinfI	GANTC	2 cut(s)	194, 298
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	3 cut(s)	91, 112, 222
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	4 cut(s)	122, 164, 259, 345
Hpy8I	GTNNAC	3 cut(s)	91, 112, 222
HpyCH4III	ACNGT	2 cut(s)	88, 230
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	91, 184, 242, 248, 329
HpyF3I	CTNAG	3 cut(s)	96, 198, 302
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	68, 188, 262
Kzo9I	GATC	2 cut(s)	255, 306
LmnI	GCTCC	3 cut(s)	7, 166, 275
LpnPI	CCDG	7 cut(s)	15, 42, 100, 108, 116, 177, 415
MabI	ACCWGGT	1 cut(s)	28
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	48
MalI	GATC	2 cut(s)	257, 308
MboI	GATC	2 cut(s)	255, 306
MboII	GAAGA	2 cut(s)	61, 369
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	3 cut(s)	211, 282, 424
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	2 cut(s)	20, 334
MnlI	CCTC	6 cut(s)	5, 91, 100, 138, 279, 378
Mph1103I	ATGCAT	1 cut(s)	331
MseI	TTAA	4 cut(s)	18, 138, 294, 333
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	30
NdeII	GATC	2 cut(s)	255, 306
NlaIII	CATG	3 cut(s)	68, 188, 262
NlaIV	GGNNCC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	331
PagI	TCATGA	1 cut(s)	258
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	298
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	306
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	4 cut(s)	18, 138, 294, 333
Sau3AI	GATC	2 cut(s)	255, 306
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	9 cut(s)	31, 51, 102, 111, 119, 240, 267, 370, 389
SexAI	ACCWGGT	1 cut(s)	28
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	3 cut(s)	211, 282, 424
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	88, 230
TaiI	ACGT	1 cut(s)	51
TasI	AATT	3 cut(s)	211, 282, 424
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	4 cut(s)	18, 138, 294, 333
Tru9I	TTAA	4 cut(s)	18, 138, 294, 333
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	275, 380
TspRI	CASTG	1 cut(s)	235
VneI	GTGCAC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	221
XspI	CTAG	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.