Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012539

Physical Location & Seq

Genomic Coordinates Forward (+)

59600620 .. 59601429

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAACAATAGCCAATTAGACGAGAACGATTGTTGTGATGATGGTCTCGTCTTTTCTGATGATATTGATTATCATGAGGAGAGAACAAGGAAACTCAATATTCTTAAAAAGAAAGAAGAGATCGTGAGCGGTGTAAAGTCAATCGCACTCCATGCCGCCACCGCAATCCCCTCCGGCGAGTCATCTTCCCCCAAGGTTGAAATATCATACATGGACACCTTTGTCTGCGGCCTCCAGCTTGATCATCATGATGAATATTCTCACAACCATAAGCCTCAGTTTCTAAAGCAAGAAGCTGATTCTGAGAAATTAGAAGCAAAAGACGATGCTGATGAATCAGAATTAAATGAAGATGGAAATCGAGTGGTAATCAAGGATGAGAAAAAATTTCCGGCTGATGGAACTATACGTGAAGCTGCCATTGGAAAAGGGTTATCTGGTGCCCTAAATTTGCTCAGAGATCGAAGAACCCTAACAGAAGAAGAGGAGGGCAAGAAAAAGAGAAAGCTCGAGACGACAAGTCATCATCATGTAGCTAAACCTAAAAGGTTACATGATTATCAGGAAGAGGATATTCGAATTGAGAGAACCGATGAGTTTGGGGGAAGCTTGACAGAGAAGGAAGCTTATAAGAGATTTTGTCATACCTTTCATGGGAAAAAATCTGGGGCAAGGAAGCAAGAAAAGCGCATAAAAAAATTCCAGAGAGAACAGAAACTGGAGAAGGATACACCATCACTCTTTGCGGAGAGGATGAAGGAGACTCAAGCTCGACTCCAGACACCCTATATTGTCCTCAGAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

269

Amino Acids

30.97

Weight (kDa)

6.34

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SART-1	PF03343	27 - 187	1.1e-06	SART-1 family
SART-1	PF03343	191 - 237	1.3e-15	SART-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14700 AT3G14700
fragaria_vesca	FvH4_5g34310
malus_domestica	MD07G1289000.v1.1
rosa_chinensis	RchiOBHm_Chr7g0234901
rosa_laevigata	RLG00000001196 RLG00000001197 RLG00000001206
rosa_multiflora	Rmu_sc0000039.1_g000006 Rmu_sc0000768.1_g000040
rosa_roxburghii	Rroxscaffold_3G00226500 Rroxscaffold_3G00226650
rosa_rugosa	Rorug07G0286100
rosa_samantha	Rh7AG440800 Rh7BG413700 Rh7CG462600 Rh7DG430600
rosa_wichuraiana	Rw7G036640 Rw7G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AasI	GACNNNNNNGTC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	129
AciI	CCGC	5 cut(s)	129, 156, 162, 228, 746
AcsI	RAATTY	3 cut(s)	386, 448, 698
AfiI	CCNNNNNNNGG	2 cut(s)	398, 654
AgsI	TTSAA	1 cut(s)	200
AhdI	GACNNNNNGTC	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	8 cut(s)	238, 296, 416, 508, 536, 609, 626, 770
AluI	AGCT	8 cut(s)	238, 296, 416, 508, 536, 609, 626, 770
Alw26I	GTCTC	3 cut(s)	50, 506, 755
AlwNI	CAGNNNCTG	1 cut(s)	718
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	3 cut(s)	386, 448, 698
AspLEI	GCGC	1 cut(s)	690
AsuII	TTCGAA	1 cut(s)	577
AvaI	CYCGRG	1 cut(s)	509
BaeGI	GKGCMC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	4 cut(s)	35, 347, 392, 742
BciVI	GTATCC	1 cut(s)	721
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	3 cut(s)	50, 506, 755
BfuI	GTATCC	1 cut(s)	721
BisI	GCNGC	3 cut(s)	156, 229, 417
BlsI	GCNGC	3 cut(s)	157, 230, 418
BmeRI	GACNNNNNGTC	1 cut(s)	519
BmeT110I	CYCGRG	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	442
BmsI	GCATC	1 cut(s)	316
BpmI	CTGGAG	3 cut(s)	218, 740, 761
Bpu14I	TTCGAA	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	750
BsaAI	YACGTR	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 654
Bse1I	ACTGG	1 cut(s)	723
Bse8I	GATNNNNATC	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	2 cut(s)	382, 759
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	398, 654
BseMII	CTCAG	3 cut(s)	290, 294, 469
BseNI	ACTGG	1 cut(s)	723
BseRI	GAGGAG	2 cut(s)	92, 500
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	2 cut(s)	174, 392
BslI	CCNNNNNNNGG	2 cut(s)	398, 654
BsmAI	GTCTC	3 cut(s)	50, 506, 755
BsmBI	CGTCTC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	509
Bsp119I	TTCGAA	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	120, 241, 460
BspACI	CCGC	5 cut(s)	129, 156, 162, 228, 746
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	4 cut(s)	289, 295, 468, 810
BspHI	TCATGA	2 cut(s)	73, 247
BspLI	GGNNCC	1 cut(s)	442
BspT104I	TTCGAA	1 cut(s)	577
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	723
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	120, 241, 460
BssT1I	CCWWGG	1 cut(s)	192
Bst6I	CTCTTC	3 cut(s)	111, 477, 561
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	577
BstDEI	CTNAG	4 cut(s)	276, 303, 455, 797
BstF5I	GGATG	2 cut(s)	382, 759
BstHHI	GCGC	1 cut(s)	690
BstKTI	GATC	3 cut(s)	123, 244, 463
BstMAI	GTCTC	3 cut(s)	50, 506, 755
BstMBI	GATC	3 cut(s)	120, 241, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 161, 685
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	382, 759
CaiI	CAGNNNCTG	1 cut(s)	718
CciI	TCATGA	2 cut(s)	73, 247
CfoI	GCGC	1 cut(s)	690
CviAII	CATG	7 cut(s)	74, 152, 211, 248, 530, 554, 653
DdeI	CTNAG	4 cut(s)	276, 303, 455, 797
DpnI	GATC	3 cut(s)	122, 243, 462
DpnII	GATC	3 cut(s)	120, 241, 460
DrdI	GACNNNNNNGTC	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	519
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	3 cut(s)	111, 477, 561
Eam1105I	GACNNNNNGTC	1 cut(s)	519
EarI	CTCTTC	3 cut(s)	111, 477, 561
Eco130I	CCWWGG	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	7 cut(s)	77, 155, 214, 251, 533, 557, 656
FatI	CATG	7 cut(s)	73, 151, 210, 247, 529, 553, 652
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	156, 229, 417
FokI	GGATG	2 cut(s)	389, 766
Fsp4HI	GCNGC	3 cut(s)	156, 229, 417
GlaI	GCGC	1 cut(s)	689
GluI	GCNGC	3 cut(s)	156, 229, 417
GsuI	CTGGAG	3 cut(s)	218, 740, 761
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	174, 392
HhaI	GCGC	1 cut(s)	690
Hin1II	CATG	7 cut(s)	77, 155, 214, 251, 533, 557, 656
Hin6I	GCGC	1 cut(s)	688
HinP1I	GCGC	1 cut(s)	688
HindIII	AAGCTT	2 cut(s)	607, 624
HinfI	GANTC	5 cut(s)	179, 299, 335, 763, 774
HpaII	CCGG	2 cut(s)	174, 392
Hpy188I	TCNGA	5 cut(s)	58, 304, 340, 458, 800
Hpy188III	TCNNGA	7 cut(s)	74, 124, 248, 511, 563, 703, 778
HpyAV	CCTTC	3 cut(s)	613, 718, 751
HpyCH4IV	ACGT	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 161, 685
HpyF3I	CTNAG	4 cut(s)	276, 303, 455, 797
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	7 cut(s)	77, 155, 214, 251, 533, 557, 656
HspAI	GCGC	1 cut(s)	688
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	120, 241, 460
LpnPI	CCDG	9 cut(s)	187, 248, 405, 423, 548, 651, 704, 716, 791
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	3 cut(s)	122, 243, 462
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	3 cut(s)	120, 241, 460
MboII	GAAGA	7 cut(s)	128, 177, 362, 477, 491, 494, 578
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	7 cut(s)	14, 308, 341, 386, 448, 579, 698
MlyI	GAGTC	3 cut(s)	188, 757, 768
MseI	TTAA	2 cut(s)	105, 344
MslI	CAYNNNNRTG	2 cut(s)	249, 528
MspI	CCGG	2 cut(s)	174, 392
MwoI	GCNNNNNNNGC	3 cut(s)	152, 161, 685
NdeII	GATC	3 cut(s)	120, 241, 460
NlaIII	CATG	7 cut(s)	77, 155, 214, 251, 533, 557, 656
NlaIV	GGNNCC	1 cut(s)	442
NspV	TTCGAA	1 cut(s)	577
PaeR7I	CTCGAG	1 cut(s)	509
PagI	TCATGA	2 cut(s)	73, 247
PfeI	GAWTC	2 cut(s)	299, 335
PkrI	GCNGC	3 cut(s)	157, 230, 418
PleI	GAGTC	3 cut(s)	187, 757, 768
PpsI	GAGTC	3 cut(s)	187, 757, 768
Ppu21I	YACGTR	1 cut(s)	410
PsiI	TTATAA	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	442
PstNI	CAGNNNCTG	1 cut(s)	718
RseI	CAYNNNNRTG	2 cut(s)	249, 528
SaqAI	TTAA	2 cut(s)	105, 344
SatI	GCNGC	3 cut(s)	156, 229, 417
Sau3AI	GATC	3 cut(s)	120, 241, 460
SchI	GAGTC	3 cut(s)	188, 757, 768
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	1 cut(s)	316
Sfr274I	CTCGAG	1 cut(s)	509
SfuI	TTCGAA	1 cut(s)	577
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	2 cut(s)	249, 528
SmlI	CTYRAG	2 cut(s)	509, 765
SmoI	CTYRAG	2 cut(s)	509, 765
Sse9I	AATT	7 cut(s)	14, 308, 341, 386, 448, 579, 698
SsiI	CCGC	5 cut(s)	129, 156, 162, 228, 746
SspI	AATATT	2 cut(s)	100, 257
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	5 cut(s)	361, 463, 510, 577, 772
TasI	AATT	7 cut(s)	14, 308, 341, 386, 448, 579, 698
TauI	GCSGC	2 cut(s)	158, 231
TfiI	GAWTC	2 cut(s)	299, 335
Tru1I	TTAA	2 cut(s)	105, 344
Tru9I	TTAA	2 cut(s)	105, 344
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	6 cut(s)	17, 267, 348, 363, 641, 770
XapI	RAATTY	3 cut(s)	386, 448, 698
XhoI	CTCGAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.