RchiOBHm_Chr6g0249481

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013921
Physical Location & Seq
Forward (+)
5471028 .. 5474731
3704 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1845 bp
ATGAAACTGAGAGGAGATTCCATGTCCATCTCTGAGGCTGCAGATGCGGTGGGGGATATCTCTGTTGATTGGAGAGGCAGACCCTGTAAGCCAACCAAACATGGTGGAATGAAGGCTGCTGTTTTTGTCCTAGGTCTACAAGGTTTTGAGATGATGGCAATAGCAGCTGTTGGGAACAATCTCATCACCTATGTACTAAATGAGATGCACTTTCCACTGTCAAAGTCTGCAAACATAGTGACCAACTTTATAGGGACAGTCTTCCTCCTCTCCCTCTTTGGAGGGTTCCTATCAGATTCTTATCTTGGGAGCTTCTGGACCATGTTAATCTTTGGGTTTGTGGAGCTTTCTGGTTTTATACTACTCTCTGTTCAAGCCCATCTGCCCCAGTTAAGGCCACCCTCCTGCAAGGTTATGTCATCCGAGTACTGTCAGGAGGCAAAGGGCTACAAGGCTCTCATATTCTTTGCTGCAATTTACTTGGTGGCCTTAGGAAGTGGTTGTCTAAAACCAAACATAATCTCTCATGGAGCTGACCAATTCAGGAAGGAGGATACCAAGCAATCCAAGAAGTTATCAACTTACTTCAATTGTGCATACTTTGCCTTCTGCATGGGAGAACTCATTGCATTAACTGTCCTTGTTTGGGTCCAAACACACTCCGGCATGGATGCTGGATTTGGAGTCTCTGCAGCTGCCATGACACTAGGACTAATTAGCTTGGTGTTTGGTACGTCTCTGTATCGGAACAAACCACCTCGCGGAAGCATTTTCACTCCAATTGCTCAAGTTTTCGTTGCTGCATTTACGAAGAGAAAGCAAATATGCCCCTCAAATACAGAAATGCTTCATGGAAACCAAAACAATGTGCCAAACCACCTCTTTGTCACCATGTCGCCTAACGTCACCACTCTCCTCCACACCGAAAAGTTCAGATTCCTAGACAAGGCATGCATCAAAACAGAAGATGGAACTGAGAGGACCGAAAGTCCATGGAGATTATGCACCGTGTCTCAGGTGGAGCAAGTCAAAATAATTATCTCAGTTGTGCCCATTTTTGCCTGTACCATCATCTTCAACACAATTTTGGCTCAACTCCAAACATTTTCAGTCCAACAAGGAAGTACAATGAACGCAAGGATCACCGAAAGCTTCAAAATCCCCCCAGCTTCACTCCAAGCCATCCCTTACATCATGCTAATCTTTCTTGTCCCTCTCTATGAAACCGTCTTTGTACCGACTGCTCGAAAAGTCACCGGAAGGGACTCTGGGATTTCTCCTTTACAAAGAGTTGGCACTGGCCTTTTTATTGCCACCTTTTCAATGGTTTCAGCTGCAGTTATTGAGAGAAAGAGAAGAAACTCGGCCTTGCACAATGAAGCTCTTTCAATCTTTTGGATTGCTCCACAGTTTCTCATCTTCGGCCTGTCAGAGATGTTCACTGCAGTAGGGCTTATAGAGTTCTTCTACAAGCAGTCATTGGAAGGAATGCAATCATTTCTAACTGCCATGACATACTGCTCATACTCATTTGGCTTCTATTTGAGCTCACTCCTTGTTTCTCTTGTGAACAAAGTTACCTCAACTTCTTCAAGGGGAGGGTGGCTCAGTGACAATGATCTCAACAAGGATAGGCTGGACCGTTTCTATTGGCTGCTGGCTGCTCTCAGTCTTATGAACTTCTTCAATTATCTCTTCTGGTCAAATTGGTATTGTTACAACCCCACTCTATCACCCACTAATACTAATTCACCCCGAGAAGATGGAAAAGACCTGGAAAACAGCAGCAACTTCAAGTACCCTTCAAGGCATATTGAAGTTTCTCATAATATTATTATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

614

Amino Acids

68.37

Weight (kDa)

8.92

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 105 - 535 8.8e-92 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013921)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33440
fragaria_vesca FvH4_2g00200
malus_domestica MD05G1000900.v1.1
prunus_persica Prupe.8G001900_v2.0.a1 Prupe.8G001900_v2.0.a1
pyrus_communis pycom05g00010
rosa_chinensis RchiOBHm_Chr6g0249481
rosa_laevigata RLG00000015577
rosa_multiflora Rmu_sc0002916.1_g000002
rosa_roxburghii Rroxscaffold_7G00217660
rosa_rugosa Rorug05G0492600 Rorug05G0492700
rosa_samantha Rh6AG002400 Rh6BG007700 Rh6CG001600 Rh6DG001600
rosa_wichuraiana Rw6G000300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1838
AccI GTMKAC 1 cut(s) 136
AccII CGCG 1 cut(s) 762
AciI CCGC 2 cut(s) 47, 762
AclWI GGATC 1 cut(s) 1148
AfaI GTAC 7 cut(s) 195, 428, 733, 1066, 1126, 1236, 1799
AfiI CCNNNNNNNGG 4 cut(s) 393, 646, 761, 946
AhdI GACNNNNNGTC 1 cut(s) 987
AjnI CCWGG 1 cut(s) 1773
Alw21I GWGCWC 1 cut(s) 1550
Alw26I GTCTC 3 cut(s) 691, 741, 1017
AlwI GGATC 1 cut(s) 1148
AlwNI CAGNNNCTG 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 1755
AoxI GGCC 5 cut(s) 395, 486, 1300, 1365, 1423
Asp700I GAANNNNTTC 2 cut(s) 846, 1682
AspA2I CCTAGG 1 cut(s) 130
AspS9I GGNCC 4 cut(s) 318, 649, 981, 1639
AsuHPI GGTGA 7 cut(s) 178, 880, 898, 1135, 1246, 1725, 1743
AvaI CYCGRG 1 cut(s) 1755
AvaII GGWCC 4 cut(s) 318, 649, 981, 1639
AvrII CCTAGG 1 cut(s) 130
AxyI CCTNAGG 1 cut(s) 490
BaeGI GKGCMC 1 cut(s) 1053
BanII GRGCYC 1 cut(s) 1550
BbsI GAAGAC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 1550
BccI CCATC 7 cut(s) 35, 148, 387, 962, 1076, 1190, 1757
BciT130I CCWGG 1 cut(s) 1775
BciVI GTATCC 1 cut(s) 547
BcoDI GTCTC 3 cut(s) 691, 741, 1017
BfaI CTAG 3 cut(s) 131, 707, 941
BfmI CTRYAG 4 cut(s) 39, 690, 1335, 1443
BfuI GTATCC 1 cut(s) 547
BlnI CCTAGG 1 cut(s) 130
BmcAI AGTACT 1 cut(s) 428
Bme1390I CCNGG 1 cut(s) 1775
Bme18I GGWCC 4 cut(s) 318, 649, 981, 1639
BmeRI GACNNNNNGTC 1 cut(s) 987
BmeT110I CYCGRG 1 cut(s) 1755
BmgT120I GGNCC 4 cut(s) 318, 649, 981, 1639
BmiI GGNNCC 2 cut(s) 287, 650
BmrFI CCNGG 1 cut(s) 1775
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 4 cut(s) 34, 195, 661, 963
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 253
BplI GAGNNNNNCTC 2 cut(s) 1590, 1622
BpuEI CTTGAG 1 cut(s) 771
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 130, 992
BsaWI WCCGGW 1 cut(s) 1256
Bsc4I CCNNNNNNNGG 4 cut(s) 393, 646, 761, 946
Bse1I ACTGG 2 cut(s) 388, 1303
Bse21I CCTNAGG 1 cut(s) 490
Bse3DI GCAATG 1 cut(s) 624
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 1 cut(s) 1775
BseDI CCNNGG 2 cut(s) 130, 992
BseGI GGATG 3 cut(s) 419, 676, 1182
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 4 cut(s) 393, 646, 761, 946
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 6 cut(s) 24, 966, 1028, 1056, 1621, 1681
BseNI ACTGG 2 cut(s) 388, 1303
BseRI GAGGAG 3 cut(s) 27, 257, 905
BseSI GKGCMC 1 cut(s) 1053
BseYI CCCAGC 1 cut(s) 1165
Bsh1236I CGCG 1 cut(s) 762
BshFI GGCC 5 cut(s) 397, 488, 1302, 1367, 1425
BsiHKAI GWGCWC 1 cut(s) 1550
BsiHKCI CYCGRG 1 cut(s) 1755
BsiSI CCGG 2 cut(s) 663, 1257
BslFI GGGAC 3 cut(s) 268, 1196, 1277
BslI CCNNNNNNNGG 4 cut(s) 393, 646, 761, 946
BsmAI GTCTC 3 cut(s) 691, 741, 1017
BsmBI CGTCTC 1 cut(s) 741
BsmFI GGGAC 3 cut(s) 268, 1196, 1277
BsmI GAATGC 1 cut(s) 1494
BsnI GGCC 5 cut(s) 397, 488, 1302, 1367, 1425
BsoBI CYCGRG 1 cut(s) 1755
Bsp1286I GDGCHC 2 cut(s) 1053, 1550
Bsp143I GATC 2 cut(s) 1140, 1618
Bsp19I CCATGG 1 cut(s) 992
BspACI CCGC 2 cut(s) 47, 762
BspANI GGCC 5 cut(s) 397, 488, 1302, 1367, 1425
BspCNI CTCAG 6 cut(s) 25, 967, 1027, 1055, 1620, 1680
BspFNI CGCG 1 cut(s) 762
BspLI GGNNCC 2 cut(s) 287, 650
BspMAI CTGCAG 4 cut(s) 43, 694, 1339, 1447
BspPI GGATC 1 cut(s) 1148
BsrDI GCAATG 1 cut(s) 624
BsrI ACTGG 2 cut(s) 388, 1303
BssECI CCNNGG 2 cut(s) 130, 992
BssMI GATC 2 cut(s) 1140, 1618
BssT1I CCWWGG 2 cut(s) 130, 992
Bst2UI CCWGG 1 cut(s) 1775
Bst4CI ACNGT 8 cut(s) 219, 259, 431, 637, 1009, 1228, 1410, 1643
Bst6I CTCTTC 2 cut(s) 806, 1700
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 952, 1659
BstDEI CTNAG 8 cut(s) 8, 33, 490, 975, 1014, 1042, 1607, 1667
BstDSI CCRYGG 1 cut(s) 992
BstENI CCTNNNNNAGG 1 cut(s) 944
BstF5I GGATG 3 cut(s) 419, 676, 1182
BstFNI CGCG 1 cut(s) 762
BstKTI GATC 2 cut(s) 1143, 1621
BstMAI GTCTC 3 cut(s) 691, 741, 1017
BstMBI GATC 2 cut(s) 1140, 1618
BstMWI GCNNNNNNNGC 3 cut(s) 44, 164, 602
BstNI CCWGG 1 cut(s) 1775
BstNSI RCATGY 1 cut(s) 954
BstSCI CCNGG 1 cut(s) 1773
BstSFI CTRYAG 4 cut(s) 39, 690, 1335, 1443
BstSLI GKGCMC 1 cut(s) 1053
BstUI CGCG 1 cut(s) 762
BstV2I GAAGAC 1 cut(s) 253
Bsu36I CCTNAGG 1 cut(s) 490
BsuI GTATCC 1 cut(s) 547
BsuRI GGCC 5 cut(s) 397, 488, 1302, 1367, 1425
BtgI CCRYGG 1 cut(s) 992
BtsCI GGATG 3 cut(s) 419, 676, 1182
BtsI GCAGTG 1 cut(s) 1440
BtsIMutI CAGTG 4 cut(s) 215, 1296, 1440, 1615
Cac8I GCNNGC 2 cut(s) 952, 1659
CaiI CAGNNNCTG 1 cut(s) 84
Cfr13I GGNCC 4 cut(s) 318, 649, 981, 1639
Csp6I GTAC 7 cut(s) 194, 427, 732, 1065, 1125, 1235, 1798
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviQI GTAC 7 cut(s) 194, 427, 732, 1065, 1125, 1235, 1798
DdeI CTNAG 8 cut(s) 8, 33, 490, 975, 1014, 1042, 1607, 1667
DpnI GATC 2 cut(s) 1142, 1620
DpnII GATC 2 cut(s) 1140, 1618
DriI GACNNNNNGTC 1 cut(s) 987
Eam1104I CTCTTC 2 cut(s) 806, 1700
Eam1105I GACNNNNNGTC 1 cut(s) 987
EarI CTCTTC 2 cut(s) 806, 1700
Ecl136II GAGCTC 1 cut(s) 1548
Eco130I CCWWGG 2 cut(s) 130, 992
Eco24I GRGCYC 1 cut(s) 1550
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 4 cut(s) 318, 649, 981, 1639
Eco53kI GAGCTC 1 cut(s) 1548
Eco81I CCTNAGG 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 1755
EcoICRI GAGCTC 1 cut(s) 1548
EcoNI CCTNNNNNAGG 1 cut(s) 944
EcoRII CCWGG 1 cut(s) 1773
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 2 cut(s) 130, 992
EcoT22I ATGCAT 1 cut(s) 956
EcoT38I GRGCYC 1 cut(s) 1550
ErhI CCWWGG 2 cut(s) 130, 992
Esp3I CGTCTC 1 cut(s) 741
FaqI GGGAC 3 cut(s) 268, 1196, 1277
FblI GTMKAC 1 cut(s) 136
FokI GGATG 3 cut(s) 406, 683, 1169
FriOI GRGCYC 1 cut(s) 1550
FspBI CTAG 3 cut(s) 131, 707, 941
GsaI CCCAGC 1 cut(s) 1169
HaeIII GGCC 5 cut(s) 397, 488, 1302, 1367, 1425
HapII CCGG 2 cut(s) 663, 1257
HindIII AAGCTT 1 cut(s) 1150
HinfI GANTC 5 cut(s) 17, 296, 684, 936, 1265
HpaII CCGG 2 cut(s) 663, 1257
HphI GGTGA 7 cut(s) 178, 880, 898, 1135, 1246, 1725, 1743
Hpy166II GTNNAC 3 cut(s) 137, 1440, 1570
Hpy188I TCNGA 6 cut(s) 34, 295, 424, 747, 935, 1432
Hpy188III TCNNGA 3 cut(s) 316, 434, 544
Hpy8I GTNNAC 3 cut(s) 137, 1440, 1570
HpyAV CCTTC 6 cut(s) 106, 541, 616, 1254, 1478, 1812
HpyCH4III ACNGT 8 cut(s) 219, 259, 431, 637, 1009, 1228, 1410, 1643
HpyCH4IV ACGT 2 cut(s) 734, 903
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 164, 602
HpyF3I CTNAG 8 cut(s) 8, 33, 490, 975, 1014, 1042, 1607, 1667
HpySE526I ACGT 2 cut(s) 734, 903
Kzo9I GATC 2 cut(s) 1140, 1618
LmnI GCTCC 5 cut(s) 309, 343, 530, 1021, 1408
LweI GCATC 4 cut(s) 34, 195, 661, 963
MaeI CTAG 3 cut(s) 131, 707, 941
MaeII ACGT 2 cut(s) 734, 903
MaeIII GTNAC 7 cut(s) 238, 886, 904, 1252, 1576, 1610, 1715
MalI GATC 2 cut(s) 1142, 1620
MboI GATC 2 cut(s) 1140, 1618
MfeI CAATTG 2 cut(s) 589, 780
MhlI GDGCHC 2 cut(s) 1053, 1550
MlyI GAGTC 2 cut(s) 693, 1259
MmeI TCCRAC 1 cut(s) 1138
Mph1103I ATGCAT 1 cut(s) 956
MroXI GAANNNNTTC 2 cut(s) 846, 1682
MseI TTAA 3 cut(s) 326, 392, 632
MspA1I CMGCKG 3 cut(s) 167, 695, 1334
MspI CCGG 2 cut(s) 663, 1257
MspR9I CCNGG 1 cut(s) 1775
MunI CAATTG 2 cut(s) 589, 780
Mva1269I GAATGC 1 cut(s) 1494
MvaI CCWGG 1 cut(s) 1775
MvnI CGCG 1 cut(s) 762
MwoI GCNNNNNNNGC 3 cut(s) 44, 164, 602
NcoI CCATGG 1 cut(s) 992
NdeII GATC 2 cut(s) 1140, 1618
NlaIV GGNNCC 2 cut(s) 287, 650
NmeAIII GCCGAG 1 cut(s) 1343
NmuCI GTSAC 5 cut(s) 238, 886, 904, 1252, 1610
NsiI ATGCAT 1 cut(s) 956
NspI RCATGY 1 cut(s) 954
PaeI GCATGC 1 cut(s) 954
PctI GAATGC 1 cut(s) 1494
PdmI GAANNNNTTC 2 cut(s) 846, 1682
PfeI GAWTC 3 cut(s) 17, 296, 936
PleI GAGTC 2 cut(s) 692, 1259
PpsI GAGTC 2 cut(s) 692, 1259
PsiI TTATAA 1 cut(s) 1838
Psp124BI GAGCTC 1 cut(s) 1550
Psp6I CCWGG 1 cut(s) 1773
PspFI CCCAGC 1 cut(s) 1165
PspGI CCWGG 1 cut(s) 1773
PspN4I GGNNCC 2 cut(s) 287, 650
PspPI GGNCC 4 cut(s) 318, 649, 981, 1639
PstI CTGCAG 4 cut(s) 43, 694, 1339, 1447
PstNI CAGNNNCTG 1 cut(s) 84
PvuII CAGCTG 3 cut(s) 167, 695, 1334
RsaI GTAC 7 cut(s) 195, 428, 733, 1066, 1126, 1236, 1799
RsaNI GTAC 7 cut(s) 194, 427, 732, 1065, 1125, 1235, 1798
SacI GAGCTC 1 cut(s) 1550
SaqAI TTAA 3 cut(s) 326, 392, 632
Sau3AI GATC 2 cut(s) 1140, 1618
Sau96I GGNCC 4 cut(s) 318, 649, 981, 1639
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 2 cut(s) 693, 1259
ScrFI CCNGG 1 cut(s) 1775
SduI GDGCHC 2 cut(s) 1053, 1550
SfaNI GCATC 4 cut(s) 34, 195, 661, 963
SfcI CTRYAG 4 cut(s) 39, 690, 1335, 1443
SinI GGWCC 4 cut(s) 318, 649, 981, 1639
SmlI CTYRAG 1 cut(s) 786
SmoI CTYRAG 1 cut(s) 786
SphI GCATGC 1 cut(s) 954
SsiI CCGC 2 cut(s) 47, 762
SspI AATATT 1 cut(s) 1831
SspMI CTAG 3 cut(s) 131, 707, 941
SstI GAGCTC 1 cut(s) 1550
StyD4I CCNGG 1 cut(s) 1773
StyI CCWWGG 2 cut(s) 130, 992
TaaI ACNGT 8 cut(s) 219, 259, 431, 637, 1009, 1228, 1410, 1643
TaiI ACGT 2 cut(s) 737, 906
TaqI TCGA 1 cut(s) 1246
TaqII GACCGA 1 cut(s) 998
TatI WGTACW 3 cut(s) 193, 426, 1124
TfiI GAWTC 3 cut(s) 17, 296, 936
Tru1I TTAA 3 cut(s) 326, 392, 632
Tru9I TTAA 3 cut(s) 326, 392, 632
TscAI CASTG 4 cut(s) 222, 1303, 1447, 1615
TseFI GTSAC 5 cut(s) 238, 886, 904, 1252, 1610
Tsp45I GTSAC 5 cut(s) 238, 886, 904, 1252, 1610
TspDTI ATGAA 7 cut(s) 17, 125, 839, 1145, 1236, 1392, 1691
TspRI CASTG 4 cut(s) 222, 1303, 1447, 1615
VpaK11BI GGWCC 4 cut(s) 318, 649, 981, 1639
XagI CCTNNNNNAGG 1 cut(s) 944
XceI RCATGY 1 cut(s) 954
XcmI CCANNNNNNNNNTGG 1 cut(s) 1321
XmaJI CCTAGG 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 136
XmnI GAANNNNTTC 2 cut(s) 846, 1682
XspI CTAG 3 cut(s) 131, 707, 941
ZrmI AGTACT 1 cut(s) 428
Zsp2I ATGCAT 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.