Rh6AG002400

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013921
Physical Location & Seq
Forward (+)
524146 .. 529393
5248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG002400.1

Sequence Viewer

Length: 1431 bp
ATGTCATCCGAGTACTGTCAGGAGGCAAAGGGCTACAAGGCTCTCATATTCTTTGCTGCAATTTACTTGGTGGCCTTAGGAAGTGGTTGTCTAAAACCAAACATAATCTCTCATGGAGCTGACCAATTCAGGAAGGAGGATACCAAGCAATCCAAGAAGTTATCAACTTACTTCAATTGTGCATACTTTGCCTTCTGCATGGGAGAACTCATTGCATTAACTGTCCTTGTTTGGGTCCAAACACACTCCGGCATGGATGTTGGATTTGGAGTCTCTGCAGCTGCCATGACACTAGGACTAATTAGCTTGGTGTTTGGTACGTCTCTGTATCGGAACAAACCACCTCGCGGAAGCATTTTCACTCCAATTGCTCAAGTTTTCGTTGCTGCATTTACGAAGAGAAAGCAAATATGCCCCTCAAATACAGAAATGCTTCATGGAAACCAAAACAATGTGCCAAACCACCTCTTTGTCACCATGTCGCCTAACGTCACCACTCTCCTCCACACCGAAAAGTTCAGATTCCTAGACAAGGCATGCATCAAAACAGAAGATGGAACTGAGAGGACCGAAAGTCCATGGAGATTATGCACCGTGTCTCAGGTGGAGCAAGTCAAAATAATTATCTCAGTTGTGCCCATTTTTGCCTGTACCATCATCTTCAACACAATTTTGGCTCAACTCCAAACATTTTCAGTCCAACAAGGAAGTACAATGAACGCAAGGATCACCGAAAGCTTCAAAATCCCCCCAGCTTCACTCCAAGCCATCCCTTACATCATGCTAATCTTTCTTGTCCCTCTCTACGAAACCGTCTTTGTACCGACTGCTCGAAAAGTCACCGGAAGGGACTCTGGGATTTCTCCTTTACAAAGAGTTGGCACTGGCCTTTTTATTGCCACCTTTTCAATGGTTTCAGCTGCAGTTATTGAGAGAAAGAGAAGAAACTCGGCCTCGCACAATGAAGCTCTTTCAATCTTTTGGATTGCTCCACAGTTTCTCATCTTCGGCCTGTCAGAGATGTTCACTGCAGTAGGGCTTATAGAGTTCTTCTACAAGCAGTCATTGGAAGGAATGCAATCATTTCTAACTGCCATGACATACTGCTCATACTCATTTGGCTTCTATTTGAGCTCACTCCTTGTTTCTCTTGTGAACAAAGTTACCTCAACTTCTTCAAGGGGAGGGTGGCTCAGTGACAATGATCTCAACAAGGATAGGCTGGACCGTTTCTATTGGCTGCTGGCTGCTCTCAGTCTTATGAACTTCTTCAATTATCTCTTCTGGTCAAATTGGTATTGTTACAACCCCACTCTATCACCCACTAATACTAATTCACCCCGAGAAGATGGAAAAGACCTGGAAAACAGCAGCAACTTCAAGTACCCTTCAAGGCATATTGAAGGTTCTCATAATATTATTATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

476

Amino Acids

53.38

Weight (kDa)

8.96

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 12 - 397 2.6e-88 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013921)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33440
fragaria_vesca FvH4_2g00200
malus_domestica MD05G1000900.v1.1
prunus_persica Prupe.8G001900_v2.0.a1 Prupe.8G001900_v2.0.a1
pyrus_communis pycom05g00010
rosa_chinensis RchiOBHm_Chr6g0249481
rosa_laevigata RLG00000015577
rosa_multiflora Rmu_sc0002916.1_g000002
rosa_roxburghii Rroxscaffold_7G00217660
rosa_rugosa Rorug05G0492600 Rorug05G0492700
rosa_samantha Rh6AG002400 Rh6BG007700 Rh6CG001600 Rh6DG001600
rosa_wichuraiana Rw6G000300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1424
AccII CGCG 1 cut(s) 348
AciI CCGC 1 cut(s) 348
AclWI GGATC 1 cut(s) 734
AfaI GTAC 6 cut(s) 14, 319, 652, 712, 822, 1385
AfiI CCNNNNNNNGG 3 cut(s) 232, 347, 532
AhdI GACNNNNNGTC 1 cut(s) 573
AjnI CCWGG 1 cut(s) 1359
AluBI AGCT 8 cut(s) 119, 281, 306, 738, 755, 920, 968, 1134
AluI AGCT 8 cut(s) 119, 281, 306, 738, 755, 920, 968, 1134
Alw21I GWGCWC 1 cut(s) 1136
Alw26I GTCTC 3 cut(s) 277, 327, 603
AlwI GGATC 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 1341
AoxI GGCC 4 cut(s) 72, 886, 951, 1009
ApeKI GCWGC 8 cut(s) 56, 278, 281, 386, 920, 1240, 1247, 1371
Asp700I GAANNNNTTC 2 cut(s) 432, 1268
AspS9I GGNCC 3 cut(s) 235, 567, 1225
AsuHPI GGTGA 6 cut(s) 466, 484, 721, 832, 1311, 1329
AvaI CYCGRG 1 cut(s) 1341
AvaII GGWCC 3 cut(s) 235, 567, 1225
AxyI CCTNAGG 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 639
BanII GRGCYC 1 cut(s) 1136
Bbv12I GWGCWC 1 cut(s) 1136
BbvI GCAGC 8 cut(s) 43, 268, 290, 373, 907, 1227, 1234, 1383
BccI CCATC 4 cut(s) 548, 662, 776, 1343
BciT130I CCWGG 1 cut(s) 1361
BciVI GTATCC 1 cut(s) 133
BcoDI GTCTC 3 cut(s) 277, 327, 603
BfaI CTAG 2 cut(s) 293, 527
BfmI CTRYAG 3 cut(s) 276, 921, 1029
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 8 cut(s) 57, 279, 282, 387, 921, 1241, 1248, 1372
BlsI GCNGC 8 cut(s) 58, 280, 283, 388, 922, 1242, 1249, 1373
BmcAI AGTACT 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 1361
Bme18I GGWCC 3 cut(s) 235, 567, 1225
BmeRI GACNNNNNGTC 1 cut(s) 573
BmeT110I CYCGRG 1 cut(s) 1341
BmgT120I GGNCC 3 cut(s) 235, 567, 1225
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 1361
BmsI GCATC 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 1176, 1208
BpuEI CTTGAG 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 578
BsaWI WCCGGW 1 cut(s) 842
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 347, 532
Bse1I ACTGG 1 cut(s) 889
Bse21I CCTNAGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 1 cut(s) 1361
BseDI CCNNGG 1 cut(s) 578
BseGI GGATG 3 cut(s) 5, 262, 768
BseLI CCNNNNNNNGG 3 cut(s) 232, 347, 532
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 5 cut(s) 552, 614, 642, 1207, 1267
BseNI ACTGG 1 cut(s) 889
BseRI GAGGAG 1 cut(s) 491
BseSI GKGCMC 1 cut(s) 639
BseXI GCAGC 8 cut(s) 43, 268, 290, 373, 907, 1227, 1234, 1383
BseYI CCCAGC 1 cut(s) 751
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 4 cut(s) 74, 888, 953, 1011
BsiHKAI GWGCWC 1 cut(s) 1136
BsiHKCI CYCGRG 1 cut(s) 1341
BsiSI CCGG 2 cut(s) 249, 843
BslFI GGGAC 2 cut(s) 782, 863
BslI CCNNNNNNNGG 3 cut(s) 232, 347, 532
BsmAI GTCTC 3 cut(s) 277, 327, 603
BsmBI CGTCTC 1 cut(s) 327
BsmFI GGGAC 2 cut(s) 782, 863
BsmI GAATGC 1 cut(s) 1080
BsnI GGCC 4 cut(s) 74, 888, 953, 1011
BsoBI CYCGRG 1 cut(s) 1341
Bsp1286I GDGCHC 2 cut(s) 639, 1136
Bsp143I GATC 2 cut(s) 726, 1204
Bsp19I CCATGG 1 cut(s) 578
BspACI CCGC 1 cut(s) 348
BspANI GGCC 4 cut(s) 74, 888, 953, 1011
BspCNI CTCAG 5 cut(s) 553, 613, 641, 1206, 1266
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 236
BspMAI CTGCAG 3 cut(s) 280, 925, 1033
BspPI GGATC 1 cut(s) 734
BsrDI GCAATG 1 cut(s) 210
BsrI ACTGG 1 cut(s) 889
BssECI CCNNGG 1 cut(s) 578
BssMI GATC 2 cut(s) 726, 1204
BssT1I CCWWGG 1 cut(s) 578
Bst2UI CCWGG 1 cut(s) 1361
Bst4CI ACNGT 6 cut(s) 17, 223, 595, 814, 996, 1229
Bst6I CTCTTC 2 cut(s) 392, 1286
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 538, 1245
BstDEI CTNAG 6 cut(s) 76, 561, 600, 628, 1193, 1253
BstDSI CCRYGG 1 cut(s) 578
BstENI CCTNNNNNAGG 1 cut(s) 530
BstF5I GGATG 3 cut(s) 5, 262, 768
BstFNI CGCG 1 cut(s) 348
BstKTI GATC 2 cut(s) 729, 1207
BstMAI GTCTC 3 cut(s) 277, 327, 603
BstMBI GATC 2 cut(s) 726, 1204
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 1361
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 1 cut(s) 1359
BstSFI CTRYAG 3 cut(s) 276, 921, 1029
BstSLI GKGCMC 1 cut(s) 639
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 8 cut(s) 43, 268, 290, 373, 907, 1227, 1234, 1383
Bsu36I CCTNAGG 1 cut(s) 76
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 4 cut(s) 74, 888, 953, 1011
BtgI CCRYGG 1 cut(s) 578
BtsCI GGATG 3 cut(s) 5, 262, 768
BtsI GCAGTG 1 cut(s) 1026
BtsIMutI CAGTG 3 cut(s) 882, 1026, 1201
Cac8I GCNNGC 2 cut(s) 538, 1245
Cfr13I GGNCC 3 cut(s) 235, 567, 1225
Csp6I GTAC 6 cut(s) 13, 318, 651, 711, 821, 1384
CviQI GTAC 6 cut(s) 13, 318, 651, 711, 821, 1384
DdeI CTNAG 6 cut(s) 76, 561, 600, 628, 1193, 1253
DpnI GATC 2 cut(s) 728, 1206
DpnII GATC 2 cut(s) 726, 1204
DriI GACNNNNNGTC 1 cut(s) 573
Eam1104I CTCTTC 2 cut(s) 392, 1286
Eam1105I GACNNNNNGTC 1 cut(s) 573
EarI CTCTTC 2 cut(s) 392, 1286
Ecl136II GAGCTC 1 cut(s) 1134
Eco130I CCWWGG 1 cut(s) 578
Eco24I GRGCYC 1 cut(s) 1136
Eco47I GGWCC 3 cut(s) 235, 567, 1225
Eco53kI GAGCTC 1 cut(s) 1134
Eco81I CCTNAGG 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 1341
EcoICRI GAGCTC 1 cut(s) 1134
EcoNI CCTNNNNNAGG 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 1359
EcoT14I CCWWGG 1 cut(s) 578
EcoT22I ATGCAT 1 cut(s) 542
EcoT38I GRGCYC 1 cut(s) 1136
ErhI CCWWGG 1 cut(s) 578
Esp3I CGTCTC 1 cut(s) 327
FaqI GGGAC 2 cut(s) 782, 863
Fnu4HI GCNGC 8 cut(s) 57, 279, 282, 387, 921, 1241, 1248, 1372
FokI GGATG 2 cut(s) 269, 755
FriOI GRGCYC 1 cut(s) 1136
Fsp4HI GCNGC 8 cut(s) 57, 279, 282, 387, 921, 1241, 1248, 1372
FspBI CTAG 2 cut(s) 293, 527
GluI GCNGC 8 cut(s) 57, 279, 282, 387, 921, 1241, 1248, 1372
GsaI CCCAGC 1 cut(s) 755
HaeIII GGCC 4 cut(s) 74, 888, 953, 1011
HapII CCGG 2 cut(s) 249, 843
HindIII AAGCTT 1 cut(s) 736
HinfI GANTC 3 cut(s) 270, 522, 851
HpaII CCGG 2 cut(s) 249, 843
HphI GGTGA 6 cut(s) 466, 484, 721, 832, 1311, 1329
Hpy166II GTNNAC 2 cut(s) 1026, 1156
Hpy188I TCNGA 4 cut(s) 10, 333, 521, 1018
Hpy188III TCNNGA 2 cut(s) 20, 130
Hpy8I GTNNAC 2 cut(s) 1026, 1156
HpyAV CCTTC 6 cut(s) 127, 202, 840, 1064, 1397, 1398
HpyCH4III ACNGT 6 cut(s) 17, 223, 595, 814, 996, 1229
HpyCH4IV ACGT 2 cut(s) 320, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 6 cut(s) 76, 561, 600, 628, 1193, 1253
HpySE526I ACGT 2 cut(s) 320, 489
Kzo9I GATC 2 cut(s) 726, 1204
LmnI GCTCC 3 cut(s) 116, 607, 994
Lsp1109I GCAGC 8 cut(s) 43, 268, 290, 373, 907, 1227, 1234, 1383
LweI GCATC 1 cut(s) 549
MaeI CTAG 2 cut(s) 293, 527
MaeII ACGT 2 cut(s) 320, 489
MaeIII GTNAC 6 cut(s) 472, 490, 838, 1162, 1196, 1301
MalI GATC 2 cut(s) 728, 1206
MboI GATC 2 cut(s) 726, 1204
MfeI CAATTG 2 cut(s) 175, 366
MhlI GDGCHC 2 cut(s) 639, 1136
MlyI GAGTC 2 cut(s) 279, 845
MmeI TCCRAC 2 cut(s) 241, 724
Mph1103I ATGCAT 1 cut(s) 542
MroXI GAANNNNTTC 2 cut(s) 432, 1268
MseI TTAA 1 cut(s) 218
MspA1I CMGCKG 2 cut(s) 281, 920
MspI CCGG 2 cut(s) 249, 843
MspR9I CCNGG 1 cut(s) 1361
MunI CAATTG 2 cut(s) 175, 366
Mva1269I GAATGC 1 cut(s) 1080
MvaI CCWGG 1 cut(s) 1361
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 188
NcoI CCATGG 1 cut(s) 578
NdeII GATC 2 cut(s) 726, 1204
NlaIV GGNNCC 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 929
NmuCI GTSAC 4 cut(s) 472, 490, 838, 1196
NsiI ATGCAT 1 cut(s) 542
NspI RCATGY 1 cut(s) 540
PaeI GCATGC 1 cut(s) 540
PctI GAATGC 1 cut(s) 1080
PdmI GAANNNNTTC 2 cut(s) 432, 1268
PfeI GAWTC 1 cut(s) 522
PkrI GCNGC 8 cut(s) 58, 280, 283, 388, 922, 1242, 1249, 1373
PleI GAGTC 2 cut(s) 278, 845
PpsI GAGTC 2 cut(s) 278, 845
PsiI TTATAA 1 cut(s) 1424
Psp124BI GAGCTC 1 cut(s) 1136
Psp6I CCWGG 1 cut(s) 1359
PspFI CCCAGC 1 cut(s) 751
PspGI CCWGG 1 cut(s) 1359
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 3 cut(s) 235, 567, 1225
PstI CTGCAG 3 cut(s) 280, 925, 1033
PvuII CAGCTG 2 cut(s) 281, 920
RsaI GTAC 6 cut(s) 14, 319, 652, 712, 822, 1385
RsaNI GTAC 6 cut(s) 13, 318, 651, 711, 821, 1384
SacI GAGCTC 1 cut(s) 1136
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 8 cut(s) 57, 279, 282, 387, 921, 1241, 1248, 1372
Sau3AI GATC 2 cut(s) 726, 1204
Sau96I GGNCC 3 cut(s) 235, 567, 1225
ScaI AGTACT 1 cut(s) 14
SchI GAGTC 2 cut(s) 279, 845
ScrFI CCNGG 1 cut(s) 1361
SduI GDGCHC 2 cut(s) 639, 1136
SfaNI GCATC 1 cut(s) 549
SfcI CTRYAG 3 cut(s) 276, 921, 1029
SinI GGWCC 3 cut(s) 235, 567, 1225
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
SphI GCATGC 1 cut(s) 540
SsiI CCGC 1 cut(s) 348
SspI AATATT 1 cut(s) 1417
SspMI CTAG 2 cut(s) 293, 527
SstI GAGCTC 1 cut(s) 1136
StyD4I CCNGG 1 cut(s) 1359
StyI CCWWGG 1 cut(s) 578
TaaI ACNGT 6 cut(s) 17, 223, 595, 814, 996, 1229
TaiI ACGT 2 cut(s) 323, 492
TaqI TCGA 1 cut(s) 832
TaqII GACCGA 1 cut(s) 584
TatI WGTACW 2 cut(s) 12, 710
TfiI GAWTC 1 cut(s) 522
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 3 cut(s) 889, 1033, 1201
TseFI GTSAC 4 cut(s) 472, 490, 838, 1196
TseI GCWGC 8 cut(s) 56, 278, 281, 386, 920, 1240, 1247, 1371
Tsp45I GTSAC 4 cut(s) 472, 490, 838, 1196
TspDTI ATGAA 4 cut(s) 425, 731, 978, 1277
TspRI CASTG 3 cut(s) 889, 1033, 1201
VpaK11BI GGWCC 3 cut(s) 235, 567, 1225
XagI CCTNNNNNAGG 1 cut(s) 530
XceI RCATGY 1 cut(s) 540
XcmI CCANNNNNNNNNTGG 1 cut(s) 907
XmnI GAANNNNTTC 2 cut(s) 432, 1268
XspI CTAG 2 cut(s) 293, 527
ZrmI AGTACT 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.