Rorug05G0492700

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013921
Physical Location & Seq
Forward (+)
67523928 .. 67524687
760 bp
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UTR
Exon/CDS
Intron
Rorug05G0492700.1

Sequence Viewer

Length: 636 bp
ATGACTTGCTTATTGTGTAATAATGGGCTGGAAAATGGAGTCCATCTATTTACAGAATGCAGTTATGCCAAGGAAGTCTGGGCTGCTACTGGACTGCCAATGCATACGGCAGTAATACCAGATTTGAAGGATTGGCTCTTAAGCATGGTTTCGTTGCTCAGTAAGGAGCTTTTTGCAAAAGTTTTAATGGGTATGTGGACTGTGTGGAAGAATAGAAATTCACAGCTATGGGAGGGCACTAAACAACACCCAGTTGAGGCTAATATGGTAGCCATGTGTTGGCTCACAGAGTTTTCTAAGGTAAATGTTAATGAAAAAGCTTCTAGTGTGCAAAGAAGAGAGTGGATTGCACCAAGTGCGGGCTGGCTGAAGTGTAATAGTGATGGGTCTTTTATCTCTTCCACCAAACGAGGAGGCATGGGAATTGTGATCCGAGATCATGCTGGCACTTTTAAGGCAGCGGCATTGAGACAAGTTGATCAAGTAGTATCACCTTTCCATGCTGAACTGTTAGCTCTCTATGAAGAGGTAAAAGAGATGCTAAGAAGACATGTGCATTATATAGTTCATTATGCTCCTAGAGATGCTAATAAGATAGCGCATACTTTAGCTTGTCACGCCCCGGATTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

211

Amino Acids

23.81

Weight (kDa)

7.7

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 126 - 174 1.4e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013921)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33440
fragaria_vesca FvH4_2g00200
malus_domestica MD05G1000900.v1.1
prunus_persica Prupe.8G001900_v2.0.a1 Prupe.8G001900_v2.0.a1
pyrus_communis pycom05g00010
rosa_chinensis RchiOBHm_Chr6g0249481
rosa_laevigata RLG00000015577
rosa_multiflora Rmu_sc0002916.1_g000002
rosa_roxburghii Rroxscaffold_7G00217660
rosa_rugosa Rorug05G0492600 Rorug05G0492700
rosa_samantha Rh6AG002400 Rh6BG007700 Rh6CG001600 Rh6DG001600
rosa_wichuraiana Rw6G000300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 279
AciI CCGC 2 cut(s) 359, 461
AclWI GGATC 1 cut(s) 424
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 389
AdeI CACNNNGTG 1 cut(s) 356
AfiI CCNNNNNNNGG 3 cut(s) 256, 279, 359
AflII CTTAAG 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 2 cut(s) 127, 632
AluBI AGCT 5 cut(s) 169, 226, 320, 515, 611
AluI AGCT 5 cut(s) 169, 226, 320, 515, 611
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 1 cut(s) 424
ApeKI GCWGC 2 cut(s) 83, 458
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 1 cut(s) 601
AsuC2I CCSGG 1 cut(s) 623
AsuHPI GGTGA 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 553
BbvI GCAGC 2 cut(s) 70, 470
BccI CCATC 2 cut(s) 51, 377
BceAI ACGGC 1 cut(s) 123
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 1 cut(s) 623
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 2 cut(s) 324, 579
BfrI CTTAAG 1 cut(s) 139
BisI GCNGC 3 cut(s) 84, 459, 462
BlsI GCNGC 3 cut(s) 85, 460, 463
Bme1390I CCNGG 1 cut(s) 623
BmrFI CCNGG 1 cut(s) 623
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 2 cut(s) 528, 574
BmuI ACTGGG 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 553
BpuMI CCSGG 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 69, 621
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 279, 359
Bse1I ACTGG 2 cut(s) 94, 251
BseDI CCNNGG 2 cut(s) 69, 621
BseLI CCNNNNNNNGG 3 cut(s) 256, 279, 359
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 2 cut(s) 94, 251
BseRI GAGGAG 1 cut(s) 426
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 2 cut(s) 70, 470
BsiSI CCGG 1 cut(s) 623
BslI CCNNNNNNNGG 3 cut(s) 256, 279, 359
BsmAI GTCTC 1 cut(s) 463
BsmI GAATGC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 3 cut(s) 429, 436, 478
BspACI CCGC 2 cut(s) 359, 461
BspCNI CTCAG 1 cut(s) 171
BspPI GGATC 1 cut(s) 424
BspTI CTTAAG 1 cut(s) 139
BsrI ACTGG 2 cut(s) 94, 251
BssECI CCNNGG 2 cut(s) 69, 621
BssMI GATC 3 cut(s) 429, 436, 478
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 202, 510
Bst6I CTCTTC 3 cut(s) 331, 403, 519
BstAFI CTTAAG 1 cut(s) 139
BstAPI GCANNNNNTGC 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 361, 365, 445
BstDEI CTNAG 3 cut(s) 158, 297, 542
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 3 cut(s) 432, 439, 481
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 3 cut(s) 429, 436, 478
BstMWI GCNNNNNNNGC 2 cut(s) 356, 617
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 1 cut(s) 621
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 70, 470
BstV2I GAAGAC 1 cut(s) 553
Cac8I GCNNGC 3 cut(s) 361, 365, 445
CfoI GCGC 1 cut(s) 601
CviAII CATG 6 cut(s) 145, 274, 418, 440, 500, 551
DdeI CTNAG 3 cut(s) 158, 297, 542
DpnI GATC 3 cut(s) 431, 438, 480
DpnII GATC 3 cut(s) 429, 436, 478
DraIII CACNNNGTG 1 cut(s) 356
Eam1104I CTCTTC 3 cut(s) 331, 403, 519
EarI CTCTTC 3 cut(s) 331, 403, 519
Eco130I CCWWGG 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 6 cut(s) 148, 277, 421, 443, 503, 554
FatI CATG 6 cut(s) 144, 273, 417, 439, 499, 550
FauI CCCGC 1 cut(s) 352
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 3 cut(s) 84, 459, 462
Fsp4HI GCNGC 3 cut(s) 84, 459, 462
FspBI CTAG 2 cut(s) 324, 579
GlaI GCGC 1 cut(s) 600
GluI GCNGC 3 cut(s) 84, 459, 462
HapII CCGG 1 cut(s) 623
HhaI GCGC 1 cut(s) 601
Hin1II CATG 6 cut(s) 148, 277, 421, 443, 503, 554
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 623
HphI GGTGA 1 cut(s) 483
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 434
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 2 cut(s) 202, 510
HpyCH4V TGCA 6 cut(s) 60, 103, 176, 331, 350, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 617
HpyF3I CTNAG 3 cut(s) 158, 297, 542
Hsp92II CATG 6 cut(s) 148, 277, 421, 443, 503, 554
HspAI GCGC 1 cut(s) 599
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 3 cut(s) 429, 436, 478
LmnI GCTCC 2 cut(s) 166, 580
LpnPI CCDG 7 cut(s) 14, 64, 75, 132, 264, 349, 429
Lsp1109I GCAGC 2 cut(s) 70, 470
LweI GCATC 2 cut(s) 528, 574
MaeI CTAG 2 cut(s) 324, 579
MaeIII GTNAC 1 cut(s) 614
MalI GATC 3 cut(s) 431, 438, 480
MboI GATC 3 cut(s) 429, 436, 478
MboII GAAGA 5 cut(s) 220, 348, 390, 536, 558
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 2 cut(s) 217, 423
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 5 cut(s) 226, 250, 404, 407, 520
Mph1103I ATGCAT 1 cut(s) 105
MseI TTAA 4 cut(s) 140, 185, 309, 453
MslI CAYNNNNRTG 1 cut(s) 226
MspA1I CMGCKG 1 cut(s) 461
MspCI CTTAAG 1 cut(s) 139
MspI CCGG 1 cut(s) 623
MspR9I CCNGG 1 cut(s) 623
Mva1269I GAATGC 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 356, 617
NciI CCSGG 1 cut(s) 623
NdeII GATC 3 cut(s) 429, 436, 478
NlaIII CATG 6 cut(s) 148, 277, 421, 443, 503, 554
NmuCI GTSAC 1 cut(s) 614
NsiI ATGCAT 1 cut(s) 105
NspI RCATGY 1 cut(s) 554
PciI ACATGT 1 cut(s) 550
PctI GAATGC 1 cut(s) 62
PflMI CCANNNNNTGG 1 cut(s) 279
PkrI GCNGC 3 cut(s) 85, 460, 463
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PscI ACATGT 1 cut(s) 550
RseI CAYNNNNRTG 1 cut(s) 226
SaqAI TTAA 4 cut(s) 140, 185, 309, 453
SatI GCNGC 3 cut(s) 84, 459, 462
Sau3AI GATC 3 cut(s) 429, 436, 478
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 623
SduI GDGCHC 1 cut(s) 239
SetI ASST 8 cut(s) 171, 228, 303, 322, 496, 517, 531, 613
SfaNI GCATC 2 cut(s) 528, 574
SmiMI CAYNNNNRTG 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 2 cut(s) 217, 423
SsiI CCGC 2 cut(s) 359, 461
SspMI CTAG 2 cut(s) 324, 579
StyD4I CCNGG 1 cut(s) 621
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 202, 510
TasI AATT 2 cut(s) 217, 423
TauI GCSGC 1 cut(s) 464
Tru1I TTAA 4 cut(s) 140, 185, 309, 453
Tru9I TTAA 4 cut(s) 140, 185, 309, 453
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 2 cut(s) 83, 458
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 3 cut(s) 327, 537, 557
Van91I CCANNNNNTGG 1 cut(s) 279
Vha464I CTTAAG 1 cut(s) 139
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 554
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XspI CTAG 2 cut(s) 324, 579
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.