Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017977

Physical Location & Seq

Genomic Coordinates Forward (+)

10656309 .. 10657963

Gene Structure 1655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCCTGATGTCCCAGAAGATGAACACCCTGACATTGTTGGAAAAACATTTGAGGCGGTTGAAGGGGCTGTTCTCGGGCTGCCTATTGATATTGTCATTGTGGATACCACAATCCGCTTATTGGGCTGTGCAAGAACTGTTGAAGAATATCACTTGATTGTTGGCAGGGTTACGATGGACTTCATGCATATTTCCAAGCGTATTGCTGCAACTAAATTATCCATTGACGGCTTGGAGAAAGTGGCACTCGATAGTTTGGATCTTAGTGTTAGACAAACGCCTTGTATTATTTGTAGGGAAGATCTTGATCACATTGATGTTGTAGAAGGAAGAATTGTTCATCCAGTGATGATTACTCGCCTGCCCTGCTCTCATCTGTATCATGGAGATTGCATTGTTGGGTGGCTGCTGATGAGCCACTTGTGTCCTTTGTGCCGATATCCAATTCCAGTTGTGAAAGTGCCGTGTGAGTTGCCCATTTTGGAAGTGACGGCTGAGGGGCCAATTTTGGAAGGGGTTGGCGAGGGGCCAATTGGGGAAGTGACTGATGAACAGCCAATTGTGGAAGTGGCTGGTGAGCGGCAGACTATGGAAGGGGCGGGTGAGCTACAGATAATTGAAGTGACCAATGAGTTGCCAGTGGAGGAAGTGGCCAGTGAGGGGCCAATTGTTGAAGTAACTGATGAGGGGCCAATTGTTGAAGTAACTGATGAGCAGCCAATTGTGGAAGTGGCCAGTGAGCATCCAATTGTGGACGTGGCTGATGAGCGATCAAAGACCTCTAGGCAGGTTGATTGGGCTATGTTGCTTAAGATGTCTGCAGGTGGTATCGTAACTGGTATGCTTGTGTGCAGATTATTGAAGTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

290

Amino Acids

31.72

Weight (kDa)

4.46

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	95 - 146	1.7e-08	Ring finger domain
zf-rbx1	PF12678	95 - 146	7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05200
rosa_chinensis	RchiOBHm_Chr6g0255331
rosa_multiflora	Rmu_sc0000903.1_g000028 Rmu_sc0004590.1_g000005 Rmu_sc0011027.1_g000004
rosa_roxburghii	Rroxscaffold_7G00210100 Rroxscaffold_7G00210130 Rroxscaffold_7G00210160
rosa_samantha	Rh6BG068900
rosa_wichuraiana	Rw6G006500 Rw6G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	812
Acc36I	ACCTGC	2 cut(s)	778, 812
AccBSI	CCGCTC	1 cut(s)	580
AciI	CCGC	4 cut(s)	56, 115, 580, 599
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	2 cut(s)	651, 732
AfiI	CCNNNNNNNGG	2 cut(s)	121, 660
AflII	CTTAAG	1 cut(s)	809
AgsI	TTSAA	6 cut(s)	62, 143, 620, 674, 701, 862
AjiI	CACGTC	1 cut(s)	757
AloI	GAACNNNNNNTCC	2 cut(s)	321, 353
AluBI	AGCT	1 cut(s)	607
AluI	AGCT	1 cut(s)	607
AlwI	GGATC	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	6 cut(s)	500, 527, 651, 662, 689, 732
ApeKI	GCWGC	4 cut(s)	79, 206, 406, 715
AspS9I	GGNCC	4 cut(s)	500, 527, 662, 689
AsuHPI	GGTGA	2 cut(s)	587, 614
AvaI	CYCGRG	1 cut(s)	74
BalI	TGGCCA	2 cut(s)	653, 734
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	66, 193, 393, 727
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	3 cut(s)	244, 448, 507
BciVI	GTATCC	1 cut(s)	97
BclI	TGATCA	1 cut(s)	307
BfaI	CTAG	1 cut(s)	783
BfmI	CTRYAG	2 cut(s)	608, 819
BfrI	CTTAAG	1 cut(s)	809
BfuAI	ACCTGC	2 cut(s)	778, 812
BfuI	GTATCC	1 cut(s)	97
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	5 cut(s)	80, 207, 407, 581, 716
BlsI	GCNGC	5 cut(s)	81, 208, 408, 582, 717
BmeT110I	CYCGRG	1 cut(s)	74
BmgBI	CACGTC	1 cut(s)	757
BmgT120I	GGNCC	4 cut(s)	500, 527, 662, 689
BmiI	GGNNCC	4 cut(s)	501, 528, 663, 690
BmsI	GCATC	1 cut(s)	751
Bpu10I	CCTNAGC	1 cut(s)	495
BsaBI	GATNNNNATC	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 660
Bse1I	ACTGG	6 cut(s)	344, 449, 638, 654, 735, 841
Bse8I	GATNNNNATC	1 cut(s)	306
BseGI	GGATG	2 cut(s)	340, 742
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	2 cut(s)	121, 660
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	6 cut(s)	344, 449, 638, 654, 735, 841
BseXI	GCAGC	4 cut(s)	66, 193, 393, 727
BsgI	GTGCAG	1 cut(s)	871
BshFI	GGCC	6 cut(s)	502, 529, 653, 664, 691, 734
BsiHKCI	CYCGRG	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	121, 660
BsnI	GGCC	6 cut(s)	502, 529, 653, 664, 691, 734
BsoBI	CYCGRG	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	259, 301, 307, 770
BspACI	CCGC	4 cut(s)	56, 115, 580, 599
BspANI	GGCC	6 cut(s)	502, 529, 653, 664, 691, 734
BspCNI	CTCAG	1 cut(s)	487
BspLI	GGNNCC	4 cut(s)	501, 528, 663, 690
BspMAI	CTGCAG	1 cut(s)	823
BspMI	ACCTGC	2 cut(s)	778, 812
BspPI	GGATC	1 cut(s)	267
BspTI	CTTAAG	1 cut(s)	809
BsrBI	CCGCTC	1 cut(s)	580
BsrI	ACTGG	6 cut(s)	344, 449, 638, 654, 735, 841
BssMI	GATC	4 cut(s)	259, 301, 307, 770
Bst4CI	ACNGT	1 cut(s)	139
BstAFI	CTTAAG	1 cut(s)	809
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	263, 495
BstF5I	GGATG	2 cut(s)	340, 742
BstKTI	GATC	4 cut(s)	262, 304, 310, 773
BstMBI	GATC	4 cut(s)	259, 301, 307, 770
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 366
BstSFI	CTRYAG	2 cut(s)	608, 819
BstV1I	GCAGC	4 cut(s)	66, 193, 393, 727
BstX2I	RGATCY	2 cut(s)	259, 301
BstYI	RGATCY	2 cut(s)	259, 301
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	6 cut(s)	502, 529, 653, 664, 691, 734
BtrI	CACGTC	1 cut(s)	757
BtsCI	GGATG	2 cut(s)	340, 742
BtsIMutI	CAGTG	4 cut(s)	351, 645, 661, 742
BveI	ACCTGC	2 cut(s)	778, 812
Cac8I	GCNNGC	1 cut(s)	362
Cfr13I	GGNCC	4 cut(s)	500, 527, 662, 689
CviAII	CATG	2 cut(s)	184, 383
DdeI	CTNAG	2 cut(s)	263, 495
DpnI	GATC	4 cut(s)	261, 303, 309, 772
DpnII	GATC	4 cut(s)	259, 301, 307, 770
EaeI	YGGCCR	2 cut(s)	651, 732
Eco32I	GATATC	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	74
EcoRV	GATATC	1 cut(s)	440
EcoT22I	ATGCAT	1 cut(s)	189
FaeI	CATG	2 cut(s)	187, 386
FaiI	YATR	6 cut(s)	185, 189, 384, 590, 803, 842
FatI	CATG	2 cut(s)	183, 382
FauI	CCCGC	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	5 cut(s)	80, 207, 407, 581, 716
FokI	GGATG	2 cut(s)	327, 729
Fsp4HI	GCNGC	5 cut(s)	80, 207, 407, 581, 716
FspBI	CTAG	1 cut(s)	783
GluI	GCNGC	5 cut(s)	80, 207, 407, 581, 716
HaeIII	GGCC	6 cut(s)	502, 529, 653, 664, 691, 734
Hin1II	CATG	2 cut(s)	187, 386
HphI	GGTGA	2 cut(s)	587, 614
Hpy166II	GTNNAC	1 cut(s)	754
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	754
HpyAV	CCTTC	4 cut(s)	56, 320, 506, 587
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	6 cut(s)	131, 187, 209, 393, 821, 852
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 366
HpyF3I	CTNAG	2 cut(s)	263, 495
HpySE526I	ACGT	1 cut(s)	756
Hsp92II	CATG	2 cut(s)	187, 386
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	259, 301, 307, 770
Lsp1109I	GCAGC	4 cut(s)	66, 193, 393, 727
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	7 cut(s)	169, 487, 541, 622, 676, 703, 832
MalI	GATC	4 cut(s)	261, 303, 309, 772
MbiI	CCGCTC	1 cut(s)	580
MboI	GATC	4 cut(s)	259, 301, 307, 770
MboII	GAAGA	4 cut(s)	29, 155, 311, 342
MfeI	CAATTG	6 cut(s)	531, 558, 666, 693, 720, 747
MflI	RGATCY	2 cut(s)	259, 301
MlsI	TGGCCA	2 cut(s)	653, 734
MluNI	TGGCCA	2 cut(s)	653, 734
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	7 cut(s)	46, 490, 517, 637, 652, 679, 790
Mox20I	TGGCCA	2 cut(s)	653, 734
Mph1103I	ATGCAT	1 cut(s)	189
MscI	TGGCCA	2 cut(s)	653, 734
MseI	TTAA	1 cut(s)	810
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	2 cut(s)	653, 734
MspCI	CTTAAG	1 cut(s)	809
MunI	CAATTG	6 cut(s)	531, 558, 666, 693, 720, 747
MwoI	GCNNNNNNNGC	2 cut(s)	123, 366
NdeII	GATC	4 cut(s)	259, 301, 307, 770
NlaIII	CATG	2 cut(s)	187, 386
NlaIV	GGNNCC	4 cut(s)	501, 528, 663, 690
NmuCI	GTSAC	3 cut(s)	487, 541, 622
NsiI	ATGCAT	1 cut(s)	189
PaqCI	CACCTGC	1 cut(s)	812
PkrI	GCNGC	5 cut(s)	81, 208, 408, 582, 717
PspN4I	GGNNCC	4 cut(s)	501, 528, 663, 690
PspPI	GGNCC	4 cut(s)	500, 527, 662, 689
PstI	CTGCAG	1 cut(s)	823
PsuI	RGATCY	2 cut(s)	259, 301
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	810
SatI	GCNGC	5 cut(s)	80, 207, 407, 581, 716
Sau3AI	GATC	4 cut(s)	259, 301, 307, 770
Sau96I	GGNCC	4 cut(s)	500, 527, 662, 689
SetI	ASST	5 cut(s)	609, 759, 782, 792, 826
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	2 cut(s)	608, 819
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
SsiI	CCGC	4 cut(s)	56, 115, 580, 599
SspMI	CTAG	1 cut(s)	783
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	1 cut(s)	249
TauI	GCSGC	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TscAI	CASTG	4 cut(s)	351, 645, 661, 742
TseFI	GTSAC	3 cut(s)	487, 541, 622
TseI	GCWGC	4 cut(s)	79, 206, 406, 715
Tsp45I	GTSAC	3 cut(s)	487, 541, 622
TspDTI	ATGAA	4 cut(s)	36, 172, 329, 564
TspRI	CASTG	4 cut(s)	351, 645, 661, 742
Vha464I	CTTAAG	1 cut(s)	809
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XspI	CTAG	1 cut(s)	783
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.