RchiOBHm_Chr6g0258881

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015549
Physical Location & Seq
Reverse (-)
14234285 .. 14236504
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 966 bp
ATGGCTCCTTCAATTTCTAATTTCTCTTCTGTCTTCCTTGTTCTTCTTGCACTGTATCTCGGCCTCATTCACCAGGTTATGAGTCTGAGTACTGCTATTAATATCACTATTAGTCCCCCTAACTACTGCGCGCCCATTAATGCCACCGATGTCGATCGCGTTCAGTTTGCCTTGAACTTAGAATTCTGTCAAGCTGAGTATTTTCTATACGGCGCTCTTGGCAAAGGCCTCGACAGCATCAGTCCGGATTTGGCCCAAGGTGGTCCGCCTCCCATTGGTGCTCGGAAGGCCTTGCTTCTCAATCCTGATGTCGCTCGTATCAGTGAAGAGATTGCTTATCAACAAGTTGGTAACATCAGGTCTATTGTTCAGACTGTGGGAGGATTTCCAAGGCCTCTACTAAATCTCGGCCTCATAAATTGGGGATTATTTTTTGACCTAGCACTGGGGAAACCCCTTATCCCTTCATTTAATCCATACGCAAACTCCCTCAATTTTCTGTTAGGGGCCTATGCCATGCCTGATCTCGCACAACTATCCTATGTTAGCGCCATTCCAAGCCTCACCACAAATTCTTCTTCATTATCTTTGGCTTCAAAGCTTTTGCCAATCAAGGCTGGACAGAGTGCAGTGATACGTACATTGTTGTACCCGAATGCAACTCAAATGGTGCCTCCATATAATATCACGGTGGGTGAATTCACCAAGGCCATTTCCCAGCTCACTAACACCCTTGGCAAGTGTGGCATCAAAAGCGAAGGCATCTTACTAGCTGACACAACCCTCGGGGCAGAGAACCGGACGACCAGTAACGTTTTGTCCGCCGATGCCAATTCACTATCGTACGCAAGAACAGAGCCTGAGATCTTGAGGATTGTGTATGGAACCGGCAATGAGCGCCTGCCCTTCGGATTTTTTCCCAAAGGTGCCAACGGCAAAATTGCAAGGAGCTTTCTGCTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

321

Amino Acids

34.32

Weight (kDa)

8.36

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 49 - 217 9.8e-23 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 670, 926
AccII CGCG 2 cut(s) 131, 159
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 2 cut(s) 266, 822
AclI AACGTT 1 cut(s) 813
AcsI RAATTY 3 cut(s) 182, 571, 698
AfaI GTAC 4 cut(s) 91, 640, 650, 845
AfiI CCNNNNNNNGG 2 cut(s) 275, 445
AgsI TTSAA 3 cut(s) 12, 175, 597
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 5 cut(s) 194, 601, 721, 773, 951
AluI AGCT 5 cut(s) 194, 601, 721, 773, 951
Alw21I GWGCWC 1 cut(s) 283
AlwNI CAGNNNCTG 1 cut(s) 860
Ama87I CYCGRG 1 cut(s) 785
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 8 cut(s) 61, 226, 252, 288, 392, 409, 507, 708
ApoI RAATTY 3 cut(s) 182, 571, 698
AseI ATTAAT 2 cut(s) 99, 138
AspLEI GCGC 5 cut(s) 131, 133, 215, 551, 900
AspS9I GGNCC 3 cut(s) 253, 263, 507
AsuHPI GGTGA 4 cut(s) 62, 556, 694, 707
AvaI CYCGRG 1 cut(s) 785
AvaII GGWCC 1 cut(s) 263
BanI GGYRCC 2 cut(s) 670, 926
BarI GAAGNNNNNNTAC 2 cut(s) 750, 782
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 283
BceAI ACGGC 2 cut(s) 226, 949
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 1 cut(s) 74
BfaI CTAG 3 cut(s) 440, 770, 964
BfoI RGCGCY 3 cut(s) 216, 552, 901
BglII AGATCT 1 cut(s) 864
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 785
BmgT120I GGNCC 3 cut(s) 253, 263, 507
BmiI GGNNCC 5 cut(s) 6, 508, 672, 886, 928
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 4 cut(s) 246, 756, 771, 817
BmuI ACTGGG 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 889
BsaAI YACGTR 1 cut(s) 638
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 5 cut(s) 256, 389, 705, 733, 784
BsaWI WCCGGW 2 cut(s) 244, 798
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 445
Bse118I RCCGGY 1 cut(s) 887
Bse1I ACTGG 2 cut(s) 450, 807
Bse3DI GCAATG 1 cut(s) 898
Bse8I GATNNNNATC 1 cut(s) 153
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 5 cut(s) 256, 389, 705, 733, 784
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 275, 445
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 3 cut(s) 77, 186, 852
BseNI ACTGG 2 cut(s) 450, 807
BsePI GCGCGC 1 cut(s) 129
BseYI CCCAGC 1 cut(s) 717
BsgI GTGCAG 1 cut(s) 648
Bsh1236I CGCG 2 cut(s) 131, 159
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 8 cut(s) 63, 228, 254, 290, 394, 411, 509, 710
BshNI GGYRCC 2 cut(s) 670, 926
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 785
BsiSI CCGG 3 cut(s) 245, 799, 888
BsiWI CGTACG 1 cut(s) 843
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 275, 445
BsmFI GGGAC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 8 cut(s) 63, 228, 254, 290, 394, 411, 509, 710
BsoBI CYCGRG 1 cut(s) 785
Bsp1286I GDGCHC 1 cut(s) 283
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 4 cut(s) 154, 523, 864, 960
BspACI CCGC 2 cut(s) 266, 822
BspANI GGCC 8 cut(s) 63, 228, 254, 290, 394, 411, 509, 710
BspCNI CTCAG 3 cut(s) 78, 187, 853
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 2 cut(s) 131, 159
BspLI GGNNCC 5 cut(s) 6, 508, 672, 886, 928
BspT107I GGYRCC 2 cut(s) 670, 926
BsrDI GCAATG 1 cut(s) 898
BsrFI RCCGGY 1 cut(s) 887
BsrI ACTGG 2 cut(s) 450, 807
BssAI RCCGGY 1 cut(s) 887
BssECI CCNNGG 5 cut(s) 256, 389, 705, 733, 784
BssHII GCGCGC 1 cut(s) 129
BssMI GATC 4 cut(s) 154, 523, 864, 960
BssT1I CCWWGG 4 cut(s) 256, 389, 705, 733
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 54, 376, 691
Bst6I CTCTTC 2 cut(s) 31, 321
BstBAI YACGTR 1 cut(s) 638
BstC8I GCNNGC 2 cut(s) 131, 902
BstDEI CTNAG 4 cut(s) 86, 178, 195, 861
BstFNI CGCG 2 cut(s) 131, 159
BstH2I RGCGCY 3 cut(s) 216, 552, 901
BstHHI GCGC 5 cut(s) 131, 133, 215, 551, 900
BstKTI GATC 4 cut(s) 157, 526, 867, 963
BstMBI GATC 4 cut(s) 154, 523, 864, 960
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 6 cut(s) 219, 234, 287, 744, 753, 897
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSNI TACGTA 1 cut(s) 638
BstUI CGCG 2 cut(s) 131, 159
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 864
BstYI RGATCY 1 cut(s) 864
BsuRI GGCC 8 cut(s) 63, 228, 254, 290, 394, 411, 509, 710
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 4 cut(s) 50, 328, 443, 636
Cac8I GCNNGC 2 cut(s) 131, 902
CaiI CAGNNNCTG 1 cut(s) 860
CfoI GCGC 5 cut(s) 131, 133, 215, 551, 900
Cfr10I RCCGGY 1 cut(s) 887
Cfr13I GGNCC 3 cut(s) 253, 263, 507
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 4 cut(s) 90, 639, 649, 844
CviAII CATG 1 cut(s) 517
CviQI GTAC 4 cut(s) 90, 639, 649, 844
DdeI CTNAG 4 cut(s) 86, 178, 195, 861
DpnI GATC 4 cut(s) 156, 525, 866, 962
DpnII GATC 4 cut(s) 154, 523, 864, 960
Eam1104I CTCTTC 2 cut(s) 31, 321
EarI CTCTTC 2 cut(s) 31, 321
EciI GGCGGA 2 cut(s) 255, 811
Eco105I TACGTA 1 cut(s) 638
Eco130I CCWWGG 4 cut(s) 256, 389, 705, 733
Eco147I AGGCCT 3 cut(s) 228, 290, 394
Eco47I GGWCC 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 785
EcoO109I RGGNCCY 1 cut(s) 507
EcoRI GAATTC 2 cut(s) 182, 698
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 4 cut(s) 256, 389, 705, 733
ErhI CCWWGG 4 cut(s) 256, 389, 705, 733
FaeI CATG 1 cut(s) 520
FaqI GGGAC 1 cut(s) 99
FatI CATG 1 cut(s) 516
FspBI CTAG 3 cut(s) 440, 770, 964
GlaI GCGC 5 cut(s) 130, 132, 214, 550, 899
GsaI CCCAGC 1 cut(s) 721
HaeII RGCGCY 3 cut(s) 216, 552, 901
HaeIII GGCC 8 cut(s) 63, 228, 254, 290, 394, 411, 509, 710
HapII CCGG 3 cut(s) 245, 799, 888
HhaI GCGC 5 cut(s) 131, 133, 215, 551, 900
Hin1II CATG 1 cut(s) 520
Hin6I GCGC 5 cut(s) 129, 131, 213, 549, 898
HinP1I GCGC 5 cut(s) 129, 131, 213, 549, 898
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 1 cut(s) 82
HpaII CCGG 3 cut(s) 245, 799, 888
HphI GGTGA 4 cut(s) 62, 556, 694, 707
Hpy188I TCNGA 4 cut(s) 87, 285, 372, 911
Hpy188III TCNNGA 3 cut(s) 245, 305, 868
HpyAV CCTTC 5 cut(s) 18, 280, 474, 752, 916
HpyCH4III ACNGT 3 cut(s) 54, 376, 691
HpyCH4IV ACGT 2 cut(s) 637, 813
HpyCH4V TGCA 4 cut(s) 50, 629, 659, 944
HpyF10VI GCNNNNNNNGC 6 cut(s) 219, 234, 287, 744, 753, 897
HpyF3I CTNAG 4 cut(s) 86, 178, 195, 861
HpySE526I ACGT 2 cut(s) 637, 813
Hsp92II CATG 1 cut(s) 520
HspAI GCGC 5 cut(s) 129, 131, 213, 549, 898
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 4 cut(s) 154, 523, 864, 960
LmnI GCTCC 2 cut(s) 10, 948
LweI GCATC 4 cut(s) 246, 756, 771, 817
MabI ACCWGGT 1 cut(s) 72
MaeI CTAG 3 cut(s) 440, 770, 964
MaeII ACGT 2 cut(s) 637, 813
MaeIII GTNAC 2 cut(s) 350, 809
MalI GATC 4 cut(s) 156, 525, 866, 962
MboI GATC 4 cut(s) 154, 523, 864, 960
MboII GAAGA 6 cut(s) 18, 25, 35, 338, 567, 570
MflI RGATCY 1 cut(s) 864
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 9 cut(s) 12, 19, 182, 418, 493, 571, 698, 832, 939
MlyI GAGTC 1 cut(s) 91
MroI TCCGGA 1 cut(s) 244
MseI TTAA 3 cut(s) 99, 138, 471
MspI CCGG 3 cut(s) 245, 799, 888
MspR9I CCNGG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 131, 159
MwoI GCNNNNNNNGC 6 cut(s) 219, 234, 287, 744, 753, 897
NdeII GATC 4 cut(s) 154, 523, 864, 960
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 5 cut(s) 6, 508, 672, 886, 928
NmeAIII GCCGAG 2 cut(s) 39, 387
PauI GCGCGC 1 cut(s) 129
PceI AGGCCT 3 cut(s) 228, 290, 394
PctI GAATGC 1 cut(s) 661
Pfl23II CGTACG 1 cut(s) 843
Ple19I CGATCG 1 cut(s) 157
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 638
PshBI ATTAAT 2 cut(s) 99, 138
Psp1406I AACGTT 1 cut(s) 813
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 717
PspGI CCWGG 1 cut(s) 72
PspLI CGTACG 1 cut(s) 843
PspN4I GGNNCC 5 cut(s) 6, 508, 672, 886, 928
PspPI GGNCC 3 cut(s) 253, 263, 507
PstNI CAGNNNCTG 1 cut(s) 860
PsuI RGATCY 1 cut(s) 864
PteI GCGCGC 1 cut(s) 129
PvuI CGATCG 1 cut(s) 157
RsaI GTAC 4 cut(s) 91, 640, 650, 845
RsaNI GTAC 4 cut(s) 90, 639, 649, 844
SaqAI TTAA 3 cut(s) 99, 138, 471
Sau3AI GATC 4 cut(s) 154, 523, 864, 960
Sau96I GGNCC 3 cut(s) 253, 263, 507
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 283
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 4 cut(s) 246, 756, 771, 817
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 868
SmoI CTYRAG 1 cut(s) 868
SnaBI TACGTA 1 cut(s) 638
Sse9I AATT 9 cut(s) 12, 19, 182, 418, 493, 571, 698, 832, 939
SseBI AGGCCT 3 cut(s) 228, 290, 394
SsiI CCGC 2 cut(s) 266, 822
SspMI CTAG 3 cut(s) 440, 770, 964
StuI AGGCCT 3 cut(s) 228, 290, 394
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 4 cut(s) 256, 389, 705, 733
TaaI ACNGT 3 cut(s) 54, 376, 691
TaiI ACGT 2 cut(s) 640, 816
TaqI TCGA 2 cut(s) 153, 231
TasI AATT 9 cut(s) 12, 19, 182, 418, 493, 571, 698, 832, 939
TatI WGTACW 1 cut(s) 89
Tru1I TTAA 3 cut(s) 99, 138, 471
Tru9I TTAA 3 cut(s) 99, 138, 471
TscAI CASTG 4 cut(s) 57, 328, 450, 636
TspDTI ATGAA 2 cut(s) 456, 570
TspRI CASTG 4 cut(s) 57, 328, 450, 636
VpaK11BI GGWCC 1 cut(s) 263
VspI ATTAAT 2 cut(s) 99, 138
XapI RAATTY 3 cut(s) 182, 571, 698
XspI CTAG 3 cut(s) 440, 770, 964
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.