RchiOBHm_Chr6g0280171

lysM domain-containing GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012394
Physical Location & Seq
Forward (+)
43464282 .. 43467254
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
ATGAGTTTCTCTAACCTCACCCTGCTCCTCACCCTCGCCCTCCTCATCTCAACCCTCACCGCCCCCTCCTCCGCCGCCACCTTCAACTGCACTACCCCCTCCGCCAATTCCACCTGCCAATCCCTCATCGACTTCGCCCCCATAAACGCCACTACTCTCAACGCCGTCAAGACCCTCTTCAACATCACCCACCTCCGCACCTTACTCGGAGCCAACAACCTCCCCCTCTCGACCCGACCCAACGAACCCGTCACCGCCAACCAGAAGCTCCGAATCCCCTTCTCCTGCCGCTGCTCCAACGGCTCCGGCGTCTCCTACCACCGCCCCCAGTACATCGTCAAGGCCGGCGACGGCCTCGACTACATAGCCACCAGCTTGTTCTCGCGCCTGGTCACGTACCAGGAGATCGCCCGGGTCAATGGCATACCCGACCCGAATAAGATCGAGGTCGGGCAGAAGCTGTGGATCCCACTGCCTTGTAGCTGCGACAAAGTGGACGGCGAGGAAGTAGTGCATTACGGACACGTGGTGGACCCTGGGAGCACGGTGCAGGGGATCGCCGAGGAGTATGGGACCACCCAAGAGACGCTCCTTCGGATCAATGGGATGCCTGACCCCAATGAACTCGAGGCTGGTCAGGTCCTTGATGTTCCTCTCAAAGCTTGTGCATCGTCAGTACGAGATGACTCGATAGATTCCCCGTTACTTGTTCCTAATAACACCTATGTCTTCACTGCTTTCAATTGTGTGAAGTGCCAATGTAGTTCTGCGAACAACTGGAAATTACAATGCGAGCCATCAAATCTTAATTCGAAATGCCCTTCGATGCAATGCCAAGATTCAAATCAATTATACATTGGCAACACCACATCTTCCTCCTCCTGCAATCAAACAACTTGTGCCTATAGGGGGTACGATAACCAAACCATTTTTACAGATCTGGTAGCTCAGTCCACCTGTTCAACTCCTAGCATCGCTTCAAAGATGGGATTACACAGCTGGAGTTGGAACTTCCTTTTCGTCTCAATTCACTTGGCTCTTCTTTGTCTTCATCTTCTATGA

Protein Analysis

353

Amino Acids

38.35

Weight (kDa)

5.78

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM2_NFP PF23457 105 - 158 1.2e-06 NFP LysM2 domain
LysM PF01476 111 - 157 1.1e-10 LysM domain
LysM PF01476 175 - 218 6e-11 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17120
fragaria_vesca FvH4_2g16381
malus_domestica MD00G1083800.v1.1
prunus_persica Prupe.8G176700_v2.0.a1 Prupe.8G176700_v2.0.a1
pyrus_communis pycom05g12980
rosa_chinensis RchiOBHm_Chr6g0280171
rosa_laevigata RLG00000013080
rosa_multiflora Rmu_co8435311.1_g000001 Rmu_sc0007137.1_g000014
rosa_roxburghii Rroxscaffold_7G00188340
rosa_rugosa Rorug06G0130300 Rorug06G0130400
rosa_samantha Rh6AG240700 Rh6AG241500 Rh6BG244400 Rh6CG246000 Rh6DG237100
rosa_wichuraiana Rw6G020970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 122
AccII CGCG 1 cut(s) 385
AciI CCGC 8 cut(s) 60, 72, 75, 102, 196, 255, 289, 322
AclWI GGATC 4 cut(s) 460, 473, 563, 605
AcvI CACGTG 1 cut(s) 526
AcyI GRCGYC 1 cut(s) 309
AdeI CACNNNGTG 1 cut(s) 529
AfaI GTAC 4 cut(s) 332, 398, 678, 914
AfiI CCNNNNNNNGG 1 cut(s) 909
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 6 cut(s) 85, 181, 742, 843, 963, 981
AjnI CCWGG 3 cut(s) 387, 399, 535
AluBI AGCT 7 cut(s) 268, 375, 460, 483, 662, 947, 999
AluI AGCT 7 cut(s) 268, 375, 460, 483, 662, 947, 999
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 3 cut(s) 316, 578, 1027
AlwI GGATC 4 cut(s) 460, 473, 563, 605
AlwNI CAGNNNCTG 1 cut(s) 460
Ama87I CYCGRG 2 cut(s) 411, 626
AoxI GGCC 2 cut(s) 342, 352
ApeKI GCWGC 2 cut(s) 291, 483
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 3 cut(s) 532, 573, 640
AsuC2I CCSGG 2 cut(s) 412, 413
AsuHPI GGTGA 5 cut(s) 10, 22, 49, 178, 244
AsuII TTCGAA 1 cut(s) 812
AvaI CYCGRG 2 cut(s) 411, 626
AvaII GGWCC 3 cut(s) 532, 573, 640
BamHI GGATCC 1 cut(s) 465
BbrPI CACGTG 1 cut(s) 526
BbsI GAAGAC 2 cut(s) 721, 1040
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 2 cut(s) 278, 470
BccI CCATC 2 cut(s) 805, 979
BceAI ACGGC 4 cut(s) 149, 316, 367, 514
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 3 cut(s) 389, 401, 537
BcnI CCSGG 2 cut(s) 412, 413
BcoDI GTCTC 3 cut(s) 316, 578, 1027
BfaI CTAG 1 cut(s) 969
BfmI CTRYAG 1 cut(s) 904
BfuAI ACCTGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 937
BisI GCNGC 4 cut(s) 75, 289, 292, 484
BlsI GCNGC 4 cut(s) 76, 290, 293, 485
Bme1390I CCNGG 5 cut(s) 389, 401, 412, 413, 537
Bme18I GGWCC 3 cut(s) 532, 573, 640
BmeT110I CYCGRG 2 cut(s) 411, 626
BmgT120I GGNCC 3 cut(s) 532, 573, 640
BmiI GGNNCC 5 cut(s) 211, 304, 467, 534, 574
BmrFI CCNGG 5 cut(s) 389, 401, 412, 413, 537
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 4 cut(s) 597, 677, 816, 981
BmuI ACTGGG 1 cut(s) 322
BpiI GAAGAC 2 cut(s) 721, 1040
BpmI CTGGAG 1 cut(s) 1021
Bpu14I TTCGAA 1 cut(s) 812
BpuMI CCSGG 2 cut(s) 412, 413
BsaAI YACGTR 2 cut(s) 396, 526
BsaBI GATNNNNATC 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 4 cut(s) 411, 535, 536, 561
Bsc4I CCNNNNNNNGG 1 cut(s) 909
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 2 cut(s) 328, 782
Bse3DI GCAATG 1 cut(s) 836
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 3 cut(s) 389, 401, 537
BseDI CCNNGG 4 cut(s) 411, 535, 536, 561
BseGI GGATG 1 cut(s) 612
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 1 cut(s) 909
BseMI GCAATG 1 cut(s) 836
BseMII CTCAG 1 cut(s) 962
BseNI ACTGG 2 cut(s) 328, 782
BseRI GAGGAG 5 cut(s) 17, 32, 58, 578, 868
BseXI GCAGC 2 cut(s) 278, 470
BsgI GTGCAG 2 cut(s) 73, 569
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 2 cut(s) 344, 354
BsiHKAI GWGCWC 1 cut(s) 545
BsiHKCI CYCGRG 2 cut(s) 411, 626
BsiSI CCGG 3 cut(s) 306, 345, 412
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 1 cut(s) 909
BsmAI GTCTC 3 cut(s) 316, 578, 1027
BsmBI CGTCTC 3 cut(s) 316, 578, 1027
BsmFI GGGAC 1 cut(s) 586
BsnI GGCC 2 cut(s) 344, 354
BsoBI CYCGRG 2 cut(s) 411, 626
Bsp119I TTCGAA 1 cut(s) 812
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 6 cut(s) 405, 441, 465, 555, 597, 937
BspACI CCGC 8 cut(s) 60, 72, 75, 102, 196, 255, 289, 322
BspANI GGCC 2 cut(s) 344, 354
BspCNI CTCAG 1 cut(s) 961
BspFNI CGCG 1 cut(s) 385
BspLI GGNNCC 5 cut(s) 211, 304, 467, 534, 574
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 4 cut(s) 460, 473, 563, 605
BspQI GCTCTTC 1 cut(s) 1044
BspT104I TTCGAA 1 cut(s) 812
BsrDI GCAATG 1 cut(s) 836
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 2 cut(s) 328, 782
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 4 cut(s) 411, 535, 536, 561
BssMI GATC 6 cut(s) 405, 441, 465, 555, 597, 937
BssNI GRCGYC 1 cut(s) 309
Bst2UI CCWGG 3 cut(s) 389, 401, 537
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 2 cut(s) 182, 1044
BstACI GRCGYC 1 cut(s) 309
BstBAI YACGTR 2 cut(s) 396, 526
BstBI TTCGAA 1 cut(s) 812
BstC8I GCNNGC 2 cut(s) 346, 794
BstDEI CTNAG 1 cut(s) 948
BstF5I GGATG 1 cut(s) 612
BstFNI CGCG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 6 cut(s) 408, 444, 468, 558, 600, 940
BstMAI GTCTC 3 cut(s) 316, 578, 1027
BstMBI GATC 6 cut(s) 405, 441, 465, 555, 597, 937
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNI CCWGG 3 cut(s) 389, 401, 537
BstSCI CCNGG 5 cut(s) 387, 399, 410, 411, 535
BstSFI CTRYAG 1 cut(s) 904
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 278, 470
BstV2I GAAGAC 2 cut(s) 721, 1040
BstX2I RGATCY 2 cut(s) 465, 937
BstYI RGATCY 2 cut(s) 465, 937
BsuRI GGCC 2 cut(s) 344, 354
BtgZI GCGATG 1 cut(s) 958
BtsCI GGATG 1 cut(s) 612
BtsI GCAGTG 2 cut(s) 470, 732
BtsIMutI CAGTG 2 cut(s) 470, 732
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 346, 794
CaiI CAGNNNCTG 1 cut(s) 460
CfoI GCGC 1 cut(s) 387
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 3 cut(s) 532, 573, 640
Cfr9I CCCGGG 1 cut(s) 411
CseI GACGC 2 cut(s) 298, 595
Csp6I GTAC 4 cut(s) 331, 397, 677, 913
CviQI GTAC 4 cut(s) 331, 397, 677, 913
DdeI CTNAG 1 cut(s) 948
DpnI GATC 6 cut(s) 407, 443, 467, 557, 599, 939
DpnII GATC 6 cut(s) 405, 441, 465, 555, 597, 937
DraIII CACNNNGTG 1 cut(s) 529
Eam1104I CTCTTC 2 cut(s) 182, 1044
EarI CTCTTC 2 cut(s) 182, 1044
EciI GGCGGA 2 cut(s) 61, 91
Eco47I GGWCC 3 cut(s) 532, 573, 640
Eco72I CACGTG 1 cut(s) 526
Eco88I CYCGRG 2 cut(s) 411, 626
EcoO109I RGGNCCY 1 cut(s) 640
EcoRII CCWGG 3 cut(s) 387, 399, 535
Esp3I CGTCTC 3 cut(s) 316, 578, 1027
FaiI YATR 8 cut(s) 143, 365, 425, 570, 726, 853, 906, 1060
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 586
Fnu4HI GCNGC 4 cut(s) 75, 289, 292, 484
FokI GGATG 1 cut(s) 619
Fsp4HI GCNGC 4 cut(s) 75, 289, 292, 484
FspBI CTAG 1 cut(s) 969
GlaI GCGC 1 cut(s) 386
GluI GCNGC 4 cut(s) 75, 289, 292, 484
GsuI CTGGAG 1 cut(s) 1021
HaeIII GGCC 2 cut(s) 344, 354
HapII CCGG 3 cut(s) 306, 345, 412
HgaI GACGC 2 cut(s) 298, 595
HhaI GCGC 1 cut(s) 387
Hin1I GRCGYC 1 cut(s) 309
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 660
HinfI GANTC 4 cut(s) 273, 686, 695, 839
HpaII CCGG 3 cut(s) 306, 345, 412
HphI GGTGA 5 cut(s) 10, 22, 49, 178, 244
Hpy166II GTNNAC 3 cut(s) 496, 532, 954
Hpy188I TCNGA 3 cut(s) 209, 272, 597
Hpy188III TCNNGA 2 cut(s) 169, 229
Hpy8I GTNNAC 3 cut(s) 496, 532, 954
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 4 cut(s) 91, 289, 602, 831
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 2 cut(s) 395, 525
HpyCH4V TGCA 6 cut(s) 90, 514, 550, 668, 829, 885
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 948
HpySE526I ACGT 2 cut(s) 395, 525
Hsp92I GRCGYC 1 cut(s) 309
HspAI GCGC 1 cut(s) 385
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
Kzo9I GATC 6 cut(s) 405, 441, 465, 555, 597, 937
LguI GCTCTTC 1 cut(s) 1044
LmnI GCTCC 7 cut(s) 30, 209, 273, 299, 308, 540, 594
Lsp1109I GCAGC 2 cut(s) 278, 470
LweI GCATC 4 cut(s) 597, 677, 816, 981
MaeI CTAG 1 cut(s) 969
MaeII ACGT 2 cut(s) 395, 525
MaeIII GTNAC 3 cut(s) 250, 391, 702
MalI GATC 6 cut(s) 407, 443, 467, 557, 599, 939
MboI GATC 6 cut(s) 405, 441, 465, 555, 597, 937
MboII GAAGA 6 cut(s) 169, 721, 864, 1031, 1040, 1046
MfeI CAATTG 1 cut(s) 742
MflI RGATCY 2 cut(s) 465, 937
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 6 cut(s) 106, 742, 782, 808, 848, 1026
MlyI GAGTC 1 cut(s) 680
MmeI TCCRAC 2 cut(s) 321, 986
MroNI GCCGGC 1 cut(s) 344
MseI TTAA 1 cut(s) 807
MspA1I CMGCKG 2 cut(s) 291, 999
MspI CCGG 3 cut(s) 306, 345, 412
MspR9I CCNGG 5 cut(s) 389, 401, 412, 413, 537
MunI CAATTG 1 cut(s) 742
MvaI CCWGG 3 cut(s) 389, 401, 537
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 1 cut(s) 300
NaeI GCCGGC 1 cut(s) 346
NciI CCSGG 2 cut(s) 412, 413
NdeII GATC 6 cut(s) 405, 441, 465, 555, 597, 937
NgoMIV GCCGGC 1 cut(s) 344
NlaIV GGNNCC 5 cut(s) 211, 304, 467, 534, 574
NmeAIII GCCGAG 1 cut(s) 586
NmuCI GTSAC 2 cut(s) 250, 391
NspV TTCGAA 1 cut(s) 812
PaeR7I CTCGAG 1 cut(s) 626
PaqCI CACCTGC 1 cut(s) 122
PasI CCCWGGG 1 cut(s) 536
PciSI GCTCTTC 1 cut(s) 1044
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PdiI GCCGGC 1 cut(s) 346
PfeI GAWTC 3 cut(s) 273, 695, 839
PkrI GCNGC 4 cut(s) 76, 290, 293, 485
PleI GAGTC 1 cut(s) 680
PmaCI CACGTG 1 cut(s) 526
PmlI CACGTG 1 cut(s) 526
PpsI GAGTC 1 cut(s) 680
Ppu21I YACGTR 2 cut(s) 396, 526
PpuMI RGGWCCY 1 cut(s) 640
Psp5II RGGWCCY 1 cut(s) 640
Psp6I CCWGG 3 cut(s) 387, 399, 535
PspCI CACGTG 1 cut(s) 526
PspGI CCWGG 3 cut(s) 387, 399, 535
PspN4I GGNNCC 5 cut(s) 211, 304, 467, 534, 574
PspPI GGNCC 3 cut(s) 532, 573, 640
PspPPI RGGWCCY 1 cut(s) 640
PspXI VCTCGAGB 1 cut(s) 626
PstNI CAGNNNCTG 1 cut(s) 460
PsuI RGATCY 2 cut(s) 465, 937
PvuII CAGCTG 1 cut(s) 999
RsaI GTAC 4 cut(s) 332, 398, 678, 914
RsaNI GTAC 4 cut(s) 331, 397, 677, 913
SapI GCTCTTC 1 cut(s) 1044
SaqAI TTAA 1 cut(s) 807
SatI GCNGC 4 cut(s) 75, 289, 292, 484
Sau3AI GATC 6 cut(s) 405, 441, 465, 555, 597, 937
Sau96I GGNCC 3 cut(s) 532, 573, 640
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 5 cut(s) 389, 401, 412, 413, 537
SduI GDGCHC 1 cut(s) 545
SfaNI GCATC 4 cut(s) 597, 677, 816, 981
SfcI CTRYAG 1 cut(s) 904
Sfr274I CTCGAG 1 cut(s) 626
SfuI TTCGAA 1 cut(s) 812
SinI GGWCC 3 cut(s) 532, 573, 640
SlaI CTCGAG 1 cut(s) 626
SmaI CCCGGG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 6 cut(s) 106, 742, 782, 808, 848, 1026
SsiI CCGC 8 cut(s) 60, 72, 75, 102, 196, 255, 289, 322
SspMI CTAG 1 cut(s) 969
StyD4I CCNGG 5 cut(s) 387, 399, 410, 411, 535
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 2 cut(s) 398, 528
TaqI TCGA 8 cut(s) 129, 230, 357, 444, 627, 689, 812, 824
TasI AATT 6 cut(s) 106, 742, 782, 808, 848, 1026
TatI WGTACW 1 cut(s) 330
TauI GCSGC 2 cut(s) 77, 291
TfiI GAWTC 3 cut(s) 273, 695, 839
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TscAI CASTG 2 cut(s) 477, 739
TseFI GTSAC 2 cut(s) 250, 391
TseI GCWGC 2 cut(s) 291, 483
Tsp45I GTSAC 2 cut(s) 250, 391
TspDTI ATGAA 2 cut(s) 636, 1040
TspGWI ACGGA 1 cut(s) 534
TspMI CCCGGG 1 cut(s) 411
TspRI CASTG 2 cut(s) 477, 739
VpaK11BI GGWCC 3 cut(s) 532, 573, 640
XhoI CTCGAG 1 cut(s) 626
XmaI CCCGGG 1 cut(s) 411
XspI CTAG 1 cut(s) 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.