RchiOBHm_Chr6g0283381

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013370
Physical Location & Seq
Reverse (-)
46579991 .. 46580822
832 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ATGGCTTCCTTCTCTCCCTTCCTCCTGATCTCCCTCTCGGCTCTGCTAATCTTACCCTCTCAGTCAGCCGACTGCCCCTCCGCCAAGTTCAAGAACAACAAGTCCTTCAGCAACTGCACCGCCCTCTCCTCCCTCAGCTCCTACCTCCACTATACCTACAACCCCTCCAACTCCTCCCTCGCCGTCGCCTTCATCGCCACACCTCCCAAGTCCGGCGGCTGGATCGCCTGGGCCATCAACCCCAACAGCACCAAAATGCCCGGCGCTCAAGCCATAGTCGCCTACACCAAAGAAGACGGCACCCCCATGATCAAAACCCTCGACATCAAATCCTACGACAAACTGATTCCCGGAAAGCTGGCCTTCGACGTCTGGGACACCAGCGCCGAGCTCACCGACGGAACCTTAACGCTCTTCGCCACCGTCAAGGTTCCGGAGAAGGCAGAGACGCTGAACCAGGTCTGGCAGGTGGGCCCTGGAGTCAACCAGTCCAACGGCTTCATCATGAAGCACGAAATGGGCAAGGAAAATCTCGCCGCGTACGGTCTCTTGAGATTGGCAGGCACCGCCAGTACCAACACCACAAACACCACTAGTGGCAGCGCGGCTAGTCCCACGAGTGGAGCGCCCTTGAGGATTCGTGAAGGAGGACACGTGGGTTTGTTCTCTATTTTGCTCTTGGGCCTTGGGACTCTTCTTGTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF568

Protein Analysis

235

Amino Acids

24.84

Weight (kDa)

8.82

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 86 - 185 5.2e-24 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07390 AT3G07390
fragaria_vesca FvH4_2g18001
malus_domestica MD05G1164300.v1.1 MD10G1153800.v1.1
prunus_persica Prupe.7G210500_v2.0.a1 Prupe.8G192600_v2.0.a1 Prupe.8G192700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0283381
rosa_laevigata RLG00000012831
rosa_multiflora Rmu_sc0003166.1_g000009
rosa_roxburghii Rroxscaffold_7G00185570
rosa_rugosa Rorug06G0153500
rosa_samantha Rh6AG266000 Rh6BG268600 Rh6CG268300 Rh6DG261800
rosa_wichuraiana Rw6G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 457
AatII GACGTC 1 cut(s) 372
Acc36I ACCTGC 1 cut(s) 457
AccB1I GGYRCC 2 cut(s) 299, 563
AccII CGCG 2 cut(s) 539, 605
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 6 cut(s) 81, 120, 216, 537, 567, 605
AclWI GGATC 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 91
AcvI CACGTG 1 cut(s) 655
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 2 cut(s) 542, 574
AfiI CCNNNNNNNGG 3 cut(s) 212, 219, 620
AflIII ACRYGT 1 cut(s) 652
AgsI TTSAA 1 cut(s) 91
AhlI ACTAGT 1 cut(s) 593
AjnI CCWGG 3 cut(s) 227, 456, 475
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 3 cut(s) 138, 358, 391
AluI AGCT 3 cut(s) 138, 358, 391
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 2 cut(s) 440, 551
AlwI GGATC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 114
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 4 cut(s) 231, 360, 472, 682
ApaI GGGCCC 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 600
AspLEI GCGC 4 cut(s) 266, 386, 605, 628
AspS9I GGNCC 4 cut(s) 231, 472, 473, 682
AsuC2I CCSGG 2 cut(s) 261, 351
AsuHPI GGTGA 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 476
BanI GGYRCC 2 cut(s) 299, 563
BanII GRGCYC 2 cut(s) 393, 476
BauI CACGAG 1 cut(s) 616
BbrPI CACGTG 1 cut(s) 655
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 393
BbvCI CCTCAGC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 612
BccI CCATC 1 cut(s) 242
BceAI ACGGC 3 cut(s) 167, 313, 511
BciT130I CCWGG 3 cut(s) 229, 458, 477
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 2 cut(s) 261, 351
BcoDI GTCTC 2 cut(s) 440, 551
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 3 cut(s) 594, 609, 706
BfoI RGCGCY 3 cut(s) 267, 387, 629
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 4 cut(s) 217, 537, 601, 606
BlsI GCNGC 4 cut(s) 218, 538, 602, 607
Bme1390I CCNGG 5 cut(s) 229, 261, 351, 458, 477
BmgT120I GGNCC 4 cut(s) 231, 472, 473, 682
BmiI GGNNCC 5 cut(s) 301, 403, 432, 474, 565
BmrFI CCNGG 5 cut(s) 229, 261, 351, 458, 477
BpiI GAAGAC 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 134
BpuEI CTTGAG 3 cut(s) 252, 571, 652
BpuMI CCSGG 2 cut(s) 261, 351
BsaAI YACGTR 1 cut(s) 655
BsaHI GRCGYC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 3 cut(s) 228, 475, 685
BsaWI WCCGGW 1 cut(s) 433
BsaXI ACNNNNNCTCC 6 cut(s) 62, 92, 149, 179, 639, 669
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 219, 620
Bse1I ACTGG 2 cut(s) 487, 570
BseAI TCCGGA 1 cut(s) 433
BseBI CCWGG 3 cut(s) 229, 458, 477
BseDI CCNNGG 3 cut(s) 228, 475, 685
BseLI CCNNNNNNNGG 3 cut(s) 212, 219, 620
BseMII CTCAG 2 cut(s) 74, 148
BseNI ACTGG 2 cut(s) 487, 570
BseRI GAGGAG 2 cut(s) 118, 163
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 1 cut(s) 612
BsgI GTGCAG 1 cut(s) 100
Bsh1236I CGCG 2 cut(s) 539, 605
BshFI GGCC 4 cut(s) 233, 362, 474, 684
BshNI GGYRCC 2 cut(s) 299, 563
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 4 cut(s) 213, 261, 351, 434
BsiWI CGTACG 1 cut(s) 540
BslFI GGGAC 3 cut(s) 389, 597, 703
BslI CCNNNNNNNGG 3 cut(s) 212, 219, 620
BsmAI GTCTC 2 cut(s) 440, 551
BsmBI CGTCTC 1 cut(s) 440
BsmFI GGGAC 3 cut(s) 389, 597, 703
BsnI GGCC 4 cut(s) 233, 362, 474, 684
Bso31I GGTCTC 1 cut(s) 551
Bsp120I GGGCCC 1 cut(s) 472
Bsp1286I GDGCHC 2 cut(s) 393, 476
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 3 cut(s) 27, 222, 309
BspACI CCGC 6 cut(s) 81, 120, 216, 537, 567, 605
BspANI GGCC 4 cut(s) 233, 362, 474, 684
BspCNI CTCAG 2 cut(s) 73, 147
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 2 cut(s) 539, 605
BspHI TCATGA 1 cut(s) 504
BspLI GGNNCC 5 cut(s) 301, 403, 432, 474, 565
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 419
BspT107I GGYRCC 2 cut(s) 299, 563
BspTNI GGTCTC 1 cut(s) 551
BsrI ACTGG 2 cut(s) 487, 570
BssECI CCNNGG 3 cut(s) 228, 475, 685
BssMI GATC 3 cut(s) 27, 222, 309
BssNI GRCGYC 1 cut(s) 369
BssSI CACGAG 1 cut(s) 616
BssT1I CCWWGG 1 cut(s) 685
Bst2BI CACGAG 1 cut(s) 616
Bst2UI CCWGG 3 cut(s) 229, 458, 477
Bst4CI ACNGT 2 cut(s) 424, 545
Bst6I CTCTTC 2 cut(s) 419, 699
BstACI GRCGYC 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 655
BstC8I GCNNGC 2 cut(s) 360, 562
BstDEI CTNAG 2 cut(s) 60, 134
BstFNI CGCG 2 cut(s) 539, 605
BstH2I RGCGCY 3 cut(s) 267, 387, 629
BstHHI GCGC 4 cut(s) 266, 386, 605, 628
BstKTI GATC 3 cut(s) 30, 225, 312
BstMAI GTCTC 2 cut(s) 440, 551
BstMBI GATC 3 cut(s) 27, 222, 309
BstMWI GCNNNNNNNGC 3 cut(s) 194, 278, 566
BstNI CCWGG 3 cut(s) 229, 458, 477
BstSCI CCNGG 5 cut(s) 227, 259, 349, 456, 475
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 2 cut(s) 539, 605
BstV1I GCAGC 1 cut(s) 612
BstV2I GAAGAC 1 cut(s) 300
BsuRI GGCC 4 cut(s) 233, 362, 474, 684
BtgZI GCGATG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 360, 562
CaiI CAGNNNCTG 1 cut(s) 114
CciI TCATGA 1 cut(s) 504
CfoI GCGC 4 cut(s) 266, 386, 605, 628
Cfr13I GGNCC 4 cut(s) 231, 472, 473, 682
CseI GACGC 1 cut(s) 457
CsiI ACCWGGT 1 cut(s) 456
Csp6I GTAC 2 cut(s) 541, 573
CviAII CATG 2 cut(s) 307, 505
CviQI GTAC 2 cut(s) 541, 573
DdeI CTNAG 2 cut(s) 60, 134
DpnI GATC 3 cut(s) 29, 224, 311
DpnII GATC 3 cut(s) 27, 222, 309
Eam1104I CTCTTC 2 cut(s) 419, 699
EarI CTCTTC 2 cut(s) 419, 699
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 685
Eco24I GRGCYC 2 cut(s) 393, 476
Eco31I GGTCTC 1 cut(s) 551
Eco53kI GAGCTC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 91
Eco72I CACGTG 1 cut(s) 655
EcoICRI GAGCTC 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 473
EcoRII CCWGG 3 cut(s) 227, 456, 475
EcoT14I CCWWGG 1 cut(s) 685
EcoT38I GRGCYC 2 cut(s) 393, 476
ErhI CCWWGG 1 cut(s) 685
Esp3I CGTCTC 1 cut(s) 440
FaeI CATG 2 cut(s) 310, 508
FaiI YATR 4 cut(s) 153, 275, 308, 506
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 3 cut(s) 389, 597, 703
FatI CATG 2 cut(s) 306, 504
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 4 cut(s) 217, 537, 601, 606
FriOI GRGCYC 2 cut(s) 393, 476
Fsp4HI GCNGC 4 cut(s) 217, 537, 601, 606
FspBI CTAG 3 cut(s) 594, 609, 706
GlaI GCGC 4 cut(s) 265, 385, 604, 627
GluI GCNGC 4 cut(s) 217, 537, 601, 606
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 3 cut(s) 267, 387, 629
HaeIII GGCC 4 cut(s) 233, 362, 474, 684
HapII CCGG 4 cut(s) 213, 261, 351, 434
HgaI GACGC 1 cut(s) 457
HhaI GCGC 4 cut(s) 266, 386, 605, 628
Hin1I GRCGYC 1 cut(s) 369
Hin1II CATG 2 cut(s) 310, 508
Hin6I GCGC 4 cut(s) 264, 384, 603, 626
HinP1I GCGC 4 cut(s) 264, 384, 603, 626
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 4 cut(s) 346, 480, 637, 691
HpaII CCGG 4 cut(s) 213, 261, 351, 434
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 484
Hpy188III TCNNGA 6 cut(s) 25, 91, 434, 505, 550, 641
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 3 cut(s) 188, 371, 401
HpyAV CCTTC 7 cut(s) 19, 28, 115, 199, 373, 433, 638
HpyCH4III ACNGT 2 cut(s) 424, 545
HpyCH4IV ACGT 2 cut(s) 369, 654
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 278, 566
HpyF3I CTNAG 2 cut(s) 60, 134
HpySE526I ACGT 2 cut(s) 369, 654
Hsp92I GRCGYC 1 cut(s) 369
Hsp92II CATG 2 cut(s) 310, 508
HspAI GCGC 4 cut(s) 264, 384, 603, 626
Kpn2I TCCGGA 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 3 cut(s) 27, 222, 309
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 2 cut(s) 143, 623
Lsp1109I GCAGC 1 cut(s) 612
MabI ACCWGGT 1 cut(s) 456
MaeI CTAG 3 cut(s) 594, 609, 706
MaeII ACGT 2 cut(s) 369, 654
MalI GATC 3 cut(s) 29, 224, 311
MboI GATC 3 cut(s) 27, 222, 309
MboII GAAGA 3 cut(s) 305, 406, 686
MhlI GDGCHC 2 cut(s) 393, 476
MlyI GAGTC 2 cut(s) 489, 685
MmeI TCCRAC 2 cut(s) 192, 516
MroI TCCGGA 1 cut(s) 433
MseI TTAA 1 cut(s) 407
MslI CAYNNNNRTG 2 cut(s) 254, 305
MspI CCGG 4 cut(s) 213, 261, 351, 434
MspR9I CCNGG 5 cut(s) 229, 261, 351, 458, 477
MvaI CCWGG 3 cut(s) 229, 458, 477
MvnI CGCG 2 cut(s) 539, 605
MwoI GCNNNNNNNGC 3 cut(s) 194, 278, 566
NciI CCSGG 2 cut(s) 261, 351
NdeII GATC 3 cut(s) 27, 222, 309
NlaIII CATG 2 cut(s) 310, 508
NlaIV GGNNCC 5 cut(s) 301, 403, 432, 474, 565
NmeAIII GCCGAG 2 cut(s) 17, 412
PagI TCATGA 1 cut(s) 504
PaqCI CACCTGC 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 419
PfeI GAWTC 2 cut(s) 346, 637
Pfl23II CGTACG 1 cut(s) 540
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 4 cut(s) 218, 538, 602, 607
PleI GAGTC 2 cut(s) 488, 685
PmaCI CACGTG 1 cut(s) 655
PmlI CACGTG 1 cut(s) 655
PpsI GAGTC 2 cut(s) 488, 685
Ppu21I YACGTR 1 cut(s) 655
Psp124BI GAGCTC 1 cut(s) 393
Psp6I CCWGG 3 cut(s) 227, 456, 475
PspCI CACGTG 1 cut(s) 655
PspGI CCWGG 3 cut(s) 227, 456, 475
PspLI CGTACG 1 cut(s) 540
PspN4I GGNNCC 5 cut(s) 301, 403, 432, 474, 565
PspOMI GGGCCC 1 cut(s) 472
PspPI GGNCC 4 cut(s) 231, 472, 473, 682
PstNI CAGNNNCTG 1 cut(s) 114
RsaI GTAC 2 cut(s) 542, 574
RsaNI GTAC 2 cut(s) 541, 573
RseI CAYNNNNRTG 2 cut(s) 254, 305
SacI GAGCTC 1 cut(s) 393
SapI GCTCTTC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 4 cut(s) 217, 537, 601, 606
Sau3AI GATC 3 cut(s) 27, 222, 309
Sau96I GGNCC 4 cut(s) 231, 472, 473, 682
SchI GAGTC 2 cut(s) 489, 685
ScrFI CCNGG 5 cut(s) 229, 261, 351, 458, 477
SduI GDGCHC 2 cut(s) 393, 476
SexAI ACCWGGT 1 cut(s) 456
SmiMI CAYNNNNRTG 2 cut(s) 254, 305
SmlI CTYRAG 3 cut(s) 267, 550, 631
SmoI CTYRAG 3 cut(s) 267, 550, 631
SpeI ACTAGT 1 cut(s) 593
SsiI CCGC 6 cut(s) 81, 120, 216, 537, 567, 605
SspMI CTAG 3 cut(s) 594, 609, 706
SstI GAGCTC 1 cut(s) 393
StyD4I CCNGG 5 cut(s) 227, 259, 349, 456, 475
StyI CCWWGG 1 cut(s) 685
TaaI ACNGT 2 cut(s) 424, 545
TaiI ACGT 2 cut(s) 372, 657
TaqI TCGA 2 cut(s) 321, 366
TauI GCSGC 3 cut(s) 219, 539, 608
TfiI GAWTC 2 cut(s) 346, 637
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TseI GCWGC 1 cut(s) 600
TspDTI ATGAA 3 cut(s) 181, 490, 521
TspGWI ACGGA 1 cut(s) 414
XspI CTAG 3 cut(s) 594, 609, 706
ZraI GACGTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.