Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014112

Physical Location & Seq

Genomic Coordinates Forward (+)

54172813 .. 54176201

Gene Structure 3389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCACGTGCCAACCTCCCTAACTATACCACTTTTGTACTACAACCGAATCAAAGAAACCACCAGTTTCGAGCTGTAACCATGGTGTCATTCCGCTTCCCCTTCTCGTTTTCTCAGCCCCCAAATCCCACTCCCGCCACCCATTCATCCGCCACCTCACGTCCCTTCACCGCCGCCGTAACCCTCGCCGCCGGCGCTGCCGCATTCGCTGCCGTCGCGCACACTAACCCCACGAACCCATTTCTCCAGAACGCACTGAATTTCTTCCTCGCCGATCGCTCGCTGCCGCTTTGGGGCTCGCTGTCCCTGAACGACACTCCGGCCTCCGTCGTCGATTCCAAGACGGGGGTGTCGTTTCCGTCGGTGCTGGACGGGACTCGGCGACTTCTGGGAATTGGGTTGAGGAGAAAACGGCTGCTGGGGTTGAAGAACATCGATGTGTATGCATATGGTATTTATGCTGATGATATAGACGTAAAGAAATTACTCGGCAAAAAATATGGGAAATTGTCCCTTTCTGAACTCCAGGAAAACAAGGAGTATAATGATGTACTGCTGGAAACTGATATAGGTGTGACTGTTAGACTTCAAATAGTTTATGGCAAATTGAGCATCGGTTCTGTACGTAGTGCTTTTGAGGAGTCGGTAGGAACCAGACTTCAGAAGTTTGGGGGATCAGATAATCAAGAATTGCTACAAAGATTCACTTCTCAATTCAAAGATGAAATTAAAATACCACGAGGATCTATAATAGATCTGTCAAGGGAACCGGGCTATGTACTTCGAACAACCATTGACGGAAATGATGTAGGGAGCATCCAAAGCAAACTCCTGTGTAAATCGATTCTGGATTTGTATATAGGTGAGGAACCATTTGATAAACAAGCCAAAGAAGATGTCAAGCTCAATTTGGCTTCTATCCTTCAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0019752 GO:0031406 GO:0031967 GO:0031975 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

310

Amino Acids

34.19

Weight (kDa)

9.16

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone_2	PF16035	128 - 300	2.4e-11	Chalcone isomerase like
Chalcone_3	PF16036	178 - 298	8.2e-09	Chalcone isomerase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63170
fragaria_vesca	FvH4_2g23480
malus_domestica	MD03G1263700.v1.1
prunus_persica	Prupe.8G240000_v2.0.a1 Prupe.8G240100_v2.0.a1 Prupe.8G240100_v2.0.a1
pyrus_communis	pycom03g21140
rosa_chinensis	RchiOBHm_Chr6g0290951
rosa_laevigata	RLG00000012162
rosa_multiflora	Rmu_sc0001577.1_g000014
rosa_roxburghii	Rroxscaffold_7G00176520
rosa_rugosa	Rorug06G0216400
rosa_samantha	Rh6AG326300 Rh6BG333900 Rh6CG340000 Rh6DG327200
rosa_wichuraiana	Rw6G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
AccII	CGCG	1 cut(s)	218
AciI	CCGC	8 cut(s)	94, 135, 150, 171, 174, 189, 201, 287
AclWI	GGATC	2 cut(s)	682, 751
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	2 cut(s)	644, 908
AcvI	CACGTG	1 cut(s)	8
AfaI	GTAC	4 cut(s)	39, 552, 624, 780
AfiI	CCNNNNNNNGG	2 cut(s)	293, 345
AgsI	TTSAA	3 cut(s)	427, 590, 718
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	2 cut(s)	74, 904
AluI	AGCT	2 cut(s)	74, 904
AlwI	GGATC	2 cut(s)	682, 751
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	4 cut(s)	197, 209, 283, 415
ApoI	RAATTY	1 cut(s)	259
ArsI	GACNNNNNNTTYG	2 cut(s)	882, 914
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	197, 220
AsuC2I	CCSGG	1 cut(s)	771
AsuHPI	GGTGA	2 cut(s)	160, 875
AsuII	TTCGAA	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	299
BauI	CACGAG	1 cut(s)	738
BbrPI	CACGTG	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	184, 196, 270, 402
BceAI	ACGGC	3 cut(s)	161, 197, 428
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	1 cut(s)	527
BcnI	CCSGG	1 cut(s)	771
BfoI	RGCGCY	1 cut(s)	198
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	8 cut(s)	174, 189, 198, 201, 210, 284, 287, 416
BlsI	GCNGC	8 cut(s)	175, 190, 199, 202, 211, 285, 288, 417
Bme1390I	CCNGG	2 cut(s)	527, 771
BmgBI	CACGTC	1 cut(s)	161
BmiI	GGNNCC	3 cut(s)	652, 768, 870
BmrFI	CCNGG	2 cut(s)	527, 771
BmsI	GCATC	2 cut(s)	621, 825
BpmI	CTGGAG	2 cut(s)	230, 509
Bpu14I	TTCGAA	1 cut(s)	784
BpuMI	CCSGG	1 cut(s)	771
Bsa29I	ATCGAT	2 cut(s)	435, 842
BsaAI	YACGTR	2 cut(s)	8, 626
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 345
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	527
BseCI	ATCGAT	2 cut(s)	435, 842
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	146, 816
BseLI	CCNNNNNNNGG	2 cut(s)	293, 345
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	418, 653
BseXI	GCAGC	4 cut(s)	184, 196, 270, 402
BseYI	CCCAGC	1 cut(s)	418
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	323
BshVI	ATCGAT	2 cut(s)	435, 842
BsiEI	CGRYCG	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	192, 320, 770
BslFI	GGGAC	4 cut(s)	147, 289, 388, 496
BslI	CCNNNNNNNGG	2 cut(s)	293, 345
BsmFI	GGGAC	4 cut(s)	147, 289, 388, 496
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	784
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	4 cut(s)	274, 674, 743, 754
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	8 cut(s)	94, 135, 150, 171, 174, 189, 201, 287
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	127
BspDI	ATCGAT	2 cut(s)	435, 842
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	3 cut(s)	652, 768, 870
BspPI	GGATC	2 cut(s)	682, 751
BspT104I	TTCGAA	1 cut(s)	784
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	4 cut(s)	274, 674, 743, 754
BssSI	CACGAG	1 cut(s)	738
BssT1I	CCWWGG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	738
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	580
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstBAI	YACGTR	2 cut(s)	8, 626
BstBI	TTCGAA	1 cut(s)	784
BstC8I	GCNNGC	3 cut(s)	193, 281, 299
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	146, 816
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	2 cut(s)	197, 220
BstKTI	GATC	4 cut(s)	277, 677, 746, 757
BstMBI	GATC	4 cut(s)	274, 674, 743, 754
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	7 cut(s)	194, 197, 206, 209, 215, 609, 822
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	525, 769
BstSNI	TACGTA	1 cut(s)	626
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	4 cut(s)	184, 196, 270, 402
BstX2I	RGATCY	2 cut(s)	743, 754
BstYI	RGATCY	2 cut(s)	743, 754
Bsu15I	ATCGAT	2 cut(s)	435, 842
BsuRI	GGCC	1 cut(s)	323
BsuTUI	ATCGAT	2 cut(s)	435, 842
BtgI	CCRYGG	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	146, 816
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	193, 281, 299
CfoI	GCGC	2 cut(s)	197, 220
Cfr10I	RCCGGY	1 cut(s)	191
ClaI	ATCGAT	2 cut(s)	435, 842
Csp6I	GTAC	4 cut(s)	38, 551, 623, 779
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	9 cut(s)	74, 118, 297, 323, 415, 774, 887, 904, 914
CviKI_1	RGCY	9 cut(s)	74, 118, 297, 323, 415, 774, 887, 904, 914
CviQI	GTAC	4 cut(s)	38, 551, 623, 779
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	4 cut(s)	276, 676, 745, 756
DpnII	GATC	4 cut(s)	274, 674, 743, 754
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EciI	GGCGGA	1 cut(s)	139
Eco105I	TACGTA	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	299
Eco57I	CTGAAG	2 cut(s)	644, 908
Eco72I	CACGTG	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	525
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	1 cut(s)	85
FalI	AAGNNNNNCTT	2 cut(s)	691, 723
FaqI	GGGAC	4 cut(s)	147, 289, 388, 496
FatI	CATG	1 cut(s)	81
FauI	CCCGC	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	448
Fnu4HI	GCNGC	8 cut(s)	174, 189, 198, 201, 210, 284, 287, 416
FokI	GGATG	2 cut(s)	133, 803
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	8 cut(s)	174, 189, 198, 201, 210, 284, 287, 416
GlaI	GCGC	2 cut(s)	196, 219
GluI	GCNGC	8 cut(s)	174, 189, 198, 201, 210, 284, 287, 416
GsaI	CCCAGC	1 cut(s)	422
GsuI	CTGGAG	2 cut(s)	230, 509
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	3 cut(s)	192, 320, 770
HhaI	GCGC	2 cut(s)	197, 220
Hin1II	CATG	1 cut(s)	85
Hin6I	GCGC	2 cut(s)	195, 218
HinP1I	GCGC	2 cut(s)	195, 218
HinfI	GANTC	6 cut(s)	49, 335, 376, 641, 702, 844
HpaII	CCGG	3 cut(s)	192, 320, 770
HphI	GGTGA	2 cut(s)	160, 875
Hpy188I	TCNGA	3 cut(s)	520, 663, 679
Hpy188III	TCNNGA	4 cut(s)	247, 686, 848, 926
Hpy99I	CGWCG	4 cut(s)	218, 332, 335, 364
HpyAV	CCTTC	3 cut(s)	112, 175, 932
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	4 cut(s)	7, 160, 474, 625
HpyCH4V	TGCA	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	7 cut(s)	194, 197, 206, 209, 215, 609, 822
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	4 cut(s)	7, 160, 474, 625
Hsp92II	CATG	1 cut(s)	85
HspAI	GCGC	2 cut(s)	195, 218
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	274, 674, 743, 754
LmnI	GCTCC	1 cut(s)	813
Lsp1109I	GCAGC	4 cut(s)	184, 196, 270, 402
LweI	GCATC	2 cut(s)	621, 825
MaeII	ACGT	4 cut(s)	7, 160, 474, 625
MaeIII	GTNAC	3 cut(s)	76, 178, 574
MalI	GATC	4 cut(s)	276, 676, 745, 756
MboI	GATC	4 cut(s)	274, 674, 743, 754
MboII	GAAGA	3 cut(s)	256, 439, 905
MflI	RGATCY	2 cut(s)	743, 754
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	9 cut(s)	259, 393, 482, 506, 605, 689, 713, 726, 907
MlyI	GAGTC	2 cut(s)	370, 650
MnlI	CCTC	9 cut(s)	26, 166, 194, 278, 334, 396, 631, 734, 859
Mph1103I	ATGCAT	1 cut(s)	448
MreI	CGCCGGCG	1 cut(s)	191
MroNI	GCCGGC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	729
MslI	CAYNNNNRTG	1 cut(s)	437
MspI	CCGG	3 cut(s)	192, 320, 770
MspR9I	CCNGG	2 cut(s)	527, 771
Mva1269I	GAATGC	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	527
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	7 cut(s)	194, 197, 206, 209, 215, 609, 822
NaeI	GCCGGC	1 cut(s)	193
NciI	CCSGG	1 cut(s)	771
NcoI	CCATGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	4 cut(s)	274, 674, 743, 754
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	3 cut(s)	652, 768, 870
NmeAIII	GCCGAG	2 cut(s)	358, 468
NmuCI	GTSAC	1 cut(s)	574
NsiI	ATGCAT	1 cut(s)	448
NspV	TTCGAA	1 cut(s)	784
PcsI	WCGNNNNNNNCGW	1 cut(s)	350
PctI	GAATGC	1 cut(s)	203
PdiI	GCCGGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	4 cut(s)	49, 335, 702, 844
PfoI	TCCNGGA	1 cut(s)	525
PkrI	GCNGC	8 cut(s)	175, 190, 199, 202, 211, 285, 288, 417
Ple19I	CGATCG	1 cut(s)	277
PleI	GAGTC	2 cut(s)	370, 649
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	370, 649
Ppu21I	YACGTR	2 cut(s)	8, 626
Psp6I	CCWGG	1 cut(s)	525
PspCI	CACGTG	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	3 cut(s)	652, 768, 870
PsuI	RGATCY	2 cut(s)	743, 754
PvuI	CGATCG	1 cut(s)	277
RsaI	GTAC	4 cut(s)	39, 552, 624, 780
RsaNI	GTAC	4 cut(s)	38, 551, 623, 779
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	729
SatI	GCNGC	8 cut(s)	174, 189, 198, 201, 210, 284, 287, 416
Sau3AI	GATC	4 cut(s)	274, 674, 743, 754
SchI	GAGTC	2 cut(s)	370, 650
ScrFI	CCNGG	2 cut(s)	527, 771
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	2 cut(s)	621, 825
SfuI	TTCGAA	1 cut(s)	784
SgrAI	CRCCGGYG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	437
SnaBI	TACGTA	1 cut(s)	626
Sse9I	AATT	9 cut(s)	259, 393, 482, 506, 605, 689, 713, 726, 907
SsiI	CCGC	8 cut(s)	94, 135, 150, 171, 174, 189, 201, 287
StyD4I	CCNGG	2 cut(s)	525, 769
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	4 cut(s)	10, 163, 477, 628
TaqI	TCGA	5 cut(s)	70, 333, 435, 784, 842
TasI	AATT	9 cut(s)	259, 393, 482, 506, 605, 689, 713, 726, 907
TatI	WGTACW	3 cut(s)	37, 550, 778
TauI	GCSGC	4 cut(s)	176, 191, 203, 289
TfiI	GAWTC	4 cut(s)	49, 335, 702, 844
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	4 cut(s)	197, 209, 283, 415
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	2 cut(s)	135, 738
TspGWI	ACGGA	3 cut(s)	316, 348, 813
TspRI	CASTG	1 cut(s)	261
XapI	RAATTY	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.