RchiOBHm_Chr6g0293181

Metal tolerance protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
55931829 .. 55936259
4431 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1479 bp
ATGGGATTCAGATTTCAGAATCTCAATTCCATACGCACAAGGCTCGCTGCTCTATACATACCCAAGCATTCTCACCTACACCCCACAATAATCTCCCAAACCCTCAATTCCCATCTCCAAGACCATTCTTTGATTCTCCATCAAAACCCGATTTACTCAATTCCCAGAAGATGGCATTTGGGCCATTCCCACGGCCCTGAGGAGGATTATGGCAAAGAGGGCGAGAAGATCTTCCGGCTGGGATTGGCTGCTGATATTGGTCTTGCTTCCGGAAAAGCTTTGACTGGTTACTTATCTGGCAGCACCGCCATAATTGCCGACGCCGCCCATTCAGTCTCCGACGTGGTTCTTAGCGGCATTGCGCTCTTGTCGTTTAAAGTTGCAAAGGCTCCGAGAGACAAAGAACACCCATATGGACATGGTAAATTTGAGACGCTAGGAGCACTTGGAATCTCTTTTATGCTGTTGGGAACTGCTGGTGGCATTGCTTGGCATGCTTTGGATATTTTGATGGGATTGTATTCAGCAAATCCAGAAGTAGTTAGTCAGTCATTGACACATCATAACCAGCACCATAGCGGACATCACCATGGAGTTGACATGGAGCACCCAACCCTAGCTTTGGGCATGACGATTCTCTCGATTGGTGTCAAAGAAGGGCTATACTGGATCACAAAACGGGCAGGAGAGAAACAAGGTAGTGGACTGATGAAAGCAAATGCATGGCATCATCGTGCAGATGCCATTTCGTCAGTAGTTGCTCTCGTCGGAGTTGGAGGTTCAATCCTAGGAGTGAAGTTTCTAGATCCCCTTGCTGGACTTCTTGTCTCGGGCATGATCCTAAAGGCTGGTATCGAAACAGGGTACCAGAGTGTCTTGGAGTTGGTGGATGCTGCAATTCCCACAAAAGAGTTGGATCCTATTAAACAAACAATTCTACAAGTCGAGGGTATGAAGGGTTGCCATCGCTTGAGAGGAAGGAGAGCTGGTTCATCTCTTTATCTTGATGTACACATTGAGGTTGATCCTTTTTGTAGTGTTAGCGCAGCACATGACATTGGAGAAAAGGTTCGTCATCATATTCACAAAACTCATCCCGAAGTGTCTGAGGTTTTTATACACATAGATCCTGCACTTCCAGTAATTTCCCCTGGTGTAGATGAGCCAAAGGAATCTCCGGGAAGTGCACACCAGAGTTCTCCTGCTGCAGAGGATAAAGACATTGATGCGGCTGTTTCCAGTATCATCTCATCTAGATATGCCCAGAAAATGGTTGTAGAGCGCGTAACGCACCACTTGTTGCAAGGGAAGATGTTTCTCCAAATCCAGGTTTCGATGCCCCCAGACATCTTGATTCGAGATGCAATAGAGGTGGCAAAAGAAGCTGAAGAAGAGATTTCGAAGGCAGCAACTAATATTATTCATGTGAGCGTTCAGCTACGTCTGGGAAGTCCAATTCCACAACTCAACCATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

492

Amino Acids

53.23

Weight (kDa)

6.59

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_efflux PF01545 80 - 296 1.9e-42 Cation efflux transmembrane domain
ZT_dimer PF16916 301 - 377 2.1e-22 Cation efflux protein, cytoplasmic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 864
AccB1I GGYRCC 1 cut(s) 864
AccB7I CCANNNNNTGG 2 cut(s) 171, 1270
AccII CGCG 1 cut(s) 1284
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 5 cut(s) 306, 324, 354, 579, 1229
AclWI GGATC 7 cut(s) 677, 800, 832, 911, 924, 1019, 1121
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 1407
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 2 cut(s) 866, 1011
AfiI CCNNNNNNNGG 6 cut(s) 171, 202, 622, 815, 1270, 1327
AgsI TTSAA 1 cut(s) 783
AhdI GACNNNNNGTC 1 cut(s) 824
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 2 cut(s) 1150, 1326
AloI GAACNNNNNNTCC 4 cut(s) 973, 1005, 1053, 1085
AluBI AGCT 5 cut(s) 278, 620, 986, 1385, 1438
AluI AGCT 5 cut(s) 278, 620, 986, 1385, 1438
Alw21I GWGCWC 3 cut(s) 445, 609, 1189
Alw26I GTCTC 4 cut(s) 340, 390, 425, 832
Alw44I GTGCAC 1 cut(s) 1185
AlwI GGATC 7 cut(s) 677, 800, 832, 911, 924, 1019, 1121
Ama87I CYCGRG 1 cut(s) 829
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 2 cut(s) 181, 193
ApaLI GTGCAC 1 cut(s) 1185
ApeKI GCWGC 7 cut(s) 47, 248, 300, 893, 1046, 1205, 1406
ApoI RAATTY 1 cut(s) 425
Asp700I GAANNNNTTC 2 cut(s) 230, 1068
Asp718I GGTACC 1 cut(s) 864
AspA2I CCTAGG 1 cut(s) 787
AspLEI GCGC 3 cut(s) 364, 1046, 1284
AspS9I GGNCC 2 cut(s) 181, 194
AsuC2I CCSGG 1 cut(s) 1179
AsuHPI GGTGA 2 cut(s) 65, 578
AsuII TTCGAA 1 cut(s) 1400
AvaI CYCGRG 1 cut(s) 829
AvrII CCTAGG 1 cut(s) 787
AxyI CCTNAGG 1 cut(s) 198
BaeGI GKGCMC 1 cut(s) 1189
BaeI ACNNNNGTAYC 2 cut(s) 856, 889
BamHI GGATCC 1 cut(s) 916
BanI GGYRCC 1 cut(s) 864
Bbv12I GWGCWC 3 cut(s) 445, 609, 1189
BbvI GCAGC 7 cut(s) 34, 235, 312, 880, 1058, 1192, 1418
BccI CCATC 5 cut(s) 120, 147, 165, 505, 972
BceAI ACGGC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciT130I CCWGG 2 cut(s) 1152, 1328
BcnI CCSGG 1 cut(s) 1179
BcoDI GTCTC 4 cut(s) 340, 390, 425, 832
BfaI CTAG 5 cut(s) 437, 617, 788, 803, 1254
BfmI CTRYAG 1 cut(s) 1206
BglII AGATCT 1 cut(s) 228
BlnI CCTAGG 1 cut(s) 787
Bme1390I CCNGG 3 cut(s) 1152, 1179, 1328
BmeRI GACNNNNNGTC 1 cut(s) 824
BmeT110I CYCGRG 1 cut(s) 829
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 2 cut(s) 181, 194
BmiI GGNNCC 3 cut(s) 390, 866, 918
BmrFI CCNGG 3 cut(s) 1152, 1179, 1328
BmsI GCATC 6 cut(s) 730, 736, 880, 1216, 1326, 1351
Bpu14I TTCGAA 1 cut(s) 1400
BpuEI CTTGAG 1 cut(s) 991
BpuMI CCSGG 1 cut(s) 1179
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 4 cut(s) 190, 589, 787, 1150
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 4 cut(s) 973, 1003, 1053, 1083
Bsc4I CCNNNNNNNGG 6 cut(s) 171, 202, 622, 815, 1270, 1327
Bse1I ACTGG 4 cut(s) 289, 671, 1139, 1239
Bse21I CCTNAGG 1 cut(s) 198
Bse3DI GCAATG 2 cut(s) 357, 483
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 2 cut(s) 1152, 1328
BseDI CCNNGG 4 cut(s) 190, 589, 787, 1150
BseGI GGATG 2 cut(s) 895, 1093
BseLI CCNNNNNNNGG 6 cut(s) 171, 202, 622, 815, 1270, 1327
BseMI GCAATG 2 cut(s) 357, 483
BseMII CTCAG 2 cut(s) 189, 1098
BseNI ACTGG 4 cut(s) 289, 671, 1139, 1239
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 1189
BseXI GCAGC 7 cut(s) 34, 235, 312, 880, 1058, 1192, 1418
BseYI CCCAGC 1 cut(s) 238
BsgI GTGCAG 2 cut(s) 756, 1116
Bsh1236I CGCG 1 cut(s) 1284
BshFI GGCC 2 cut(s) 183, 195
BshNI GGYRCC 1 cut(s) 864
BsiHKAI GWGCWC 3 cut(s) 445, 609, 1189
BsiHKCI CYCGRG 1 cut(s) 829
BsiSI CCGG 3 cut(s) 235, 270, 1178
BslI CCNNNNNNNGG 6 cut(s) 171, 202, 622, 815, 1270, 1327
BsmAI GTCTC 4 cut(s) 340, 390, 425, 832
BsmBI CGTCTC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 2 cut(s) 183, 195
BsoBI CYCGRG 1 cut(s) 829
Bsp119I TTCGAA 1 cut(s) 1400
Bsp1286I GDGCHC 3 cut(s) 445, 609, 1189
Bsp13I TCCGGA 1 cut(s) 269
Bsp1407I TGTACA 1 cut(s) 1009
Bsp143I GATC 7 cut(s) 228, 669, 805, 837, 916, 1024, 1126
Bsp19I CCATGG 1 cut(s) 589
BspACI CCGC 5 cut(s) 306, 324, 354, 579, 1229
BspANI GGCC 2 cut(s) 183, 195
BspCNI CTCAG 2 cut(s) 190, 1099
BspEI TCCGGA 1 cut(s) 269
BspFNI CGCG 1 cut(s) 1284
BspLI GGNNCC 3 cut(s) 390, 866, 918
BspMAI CTGCAG 1 cut(s) 1210
BspPI GGATC 7 cut(s) 677, 800, 832, 911, 924, 1019, 1121
BspT104I TTCGAA 1 cut(s) 1400
BspT107I GGYRCC 1 cut(s) 864
BsrDI GCAATG 2 cut(s) 357, 483
BsrGI TGTACA 1 cut(s) 1009
BsrI ACTGG 4 cut(s) 289, 671, 1139, 1239
BssECI CCNNGG 4 cut(s) 190, 589, 787, 1150
BssMI GATC 7 cut(s) 228, 669, 805, 837, 916, 1024, 1126
BssNI GRCGYC 1 cut(s) 321
BssT1I CCWWGG 2 cut(s) 589, 787
Bst2UI CCWGG 2 cut(s) 1152, 1328
Bst6I CTCTTC 1 cut(s) 1386
BstACI GRCGYC 1 cut(s) 321
BstAUI TGTACA 1 cut(s) 1009
BstBI TTCGAA 1 cut(s) 1400
BstC8I GCNNGC 2 cut(s) 45, 495
BstDEI CTNAG 3 cut(s) 198, 350, 1107
BstDSI CCRYGG 2 cut(s) 190, 589
BstF5I GGATG 2 cut(s) 895, 1093
BstFNI CGCG 1 cut(s) 1284
BstHHI GCGC 3 cut(s) 364, 1046, 1284
BstKTI GATC 7 cut(s) 231, 672, 808, 840, 919, 1027, 1129
BstMAI GTCTC 4 cut(s) 340, 390, 425, 832
BstMBI GATC 7 cut(s) 228, 669, 805, 837, 916, 1024, 1126
BstMWI GCNNNNNNNGC 6 cut(s) 219, 314, 323, 494, 1288, 1382
BstNI CCWGG 2 cut(s) 1152, 1328
BstNSI RCATGY 1 cut(s) 497
BstSCI CCNGG 3 cut(s) 1150, 1177, 1326
BstSFI CTRYAG 1 cut(s) 1206
BstSLI GKGCMC 1 cut(s) 1189
BstUI CGCG 1 cut(s) 1284
BstV1I GCAGC 7 cut(s) 34, 235, 312, 880, 1058, 1192, 1418
BstX2I RGATCY 4 cut(s) 228, 805, 916, 1126
BstYI RGATCY 4 cut(s) 228, 805, 916, 1126
Bsu36I CCTNAGG 1 cut(s) 198
BsuRI GGCC 2 cut(s) 183, 195
BtgI CCRYGG 2 cut(s) 190, 589
BtgZI GCGATG 1 cut(s) 950
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 2 cut(s) 895, 1093
Cac8I GCNNGC 2 cut(s) 45, 495
CfoI GCGC 3 cut(s) 364, 1046, 1284
Cfr13I GGNCC 2 cut(s) 181, 194
CseI GACGC 2 cut(s) 329, 442
Csp6I GTAC 2 cut(s) 865, 1010
CspCI CAANNNNNGTGG 2 cut(s) 1353, 1388
CviQI GTAC 2 cut(s) 865, 1010
DdeI CTNAG 3 cut(s) 198, 350, 1107
DpnI GATC 7 cut(s) 230, 671, 807, 839, 918, 1026, 1128
DpnII GATC 7 cut(s) 228, 669, 805, 837, 916, 1024, 1126
DraI TTTAAA 1 cut(s) 376
DriI GACNNNNNGTC 1 cut(s) 824
Eam1104I CTCTTC 1 cut(s) 1386
Eam1105I GACNNNNNGTC 1 cut(s) 824
EarI CTCTTC 1 cut(s) 1386
Eco130I CCWWGG 2 cut(s) 589, 787
Eco57I CTGAAG 1 cut(s) 1407
Eco81I CCTNAGG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 829
EcoRII CCWGG 2 cut(s) 1150, 1326
EcoT14I CCWWGG 2 cut(s) 589, 787
EcoT22I ATGCAT 1 cut(s) 724
ErhI CCWWGG 2 cut(s) 589, 787
Esp3I CGTCTC 1 cut(s) 425
FauNDI CATATG 1 cut(s) 412
FokI GGATG 2 cut(s) 902, 1080
FspBI CTAG 5 cut(s) 437, 617, 788, 803, 1254
GlaI GCGC 3 cut(s) 363, 1045, 1283
GsaI CCCAGC 1 cut(s) 242
HaeIII GGCC 2 cut(s) 183, 195
HapII CCGG 3 cut(s) 235, 270, 1178
HgaI GACGC 2 cut(s) 329, 442
HhaI GCGC 3 cut(s) 364, 1046, 1284
Hin1I GRCGYC 1 cut(s) 321
Hin6I GCGC 3 cut(s) 362, 1044, 1282
HinP1I GCGC 3 cut(s) 362, 1044, 1282
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 7 cut(s) 6, 19, 133, 450, 634, 1172, 1354
HpaII CCGG 3 cut(s) 235, 270, 1178
HphI GGTGA 2 cut(s) 65, 578
Hpy166II GTNNAC 4 cut(s) 598, 704, 1012, 1187
Hpy188I TCNGA 6 cut(s) 11, 18, 340, 393, 770, 1108
Hpy188III TCNNGA 9 cut(s) 270, 533, 640, 803, 1004, 1097, 1254, 1351, 1358
Hpy8I GTNNAC 4 cut(s) 598, 704, 1012, 1187
Hpy99I CGWCG 3 cut(s) 323, 344, 770
HpyAV CCTTC 4 cut(s) 650, 949, 972, 1396
HpyCH4IV ACGT 2 cut(s) 342, 1441
HpyCH4V TGCA 9 cut(s) 383, 722, 737, 896, 1133, 1187, 1208, 1303, 1364
HpyF10VI GCNNNNNNNGC 6 cut(s) 219, 314, 323, 494, 1288, 1382
HpyF3I CTNAG 3 cut(s) 198, 350, 1107
HpySE526I ACGT 2 cut(s) 342, 1441
Hsp92I GRCGYC 1 cut(s) 321
HspAI GCGC 3 cut(s) 362, 1044, 1282
Kpn2I TCCGGA 1 cut(s) 269
KpnI GGTACC 1 cut(s) 868
Kzo9I GATC 7 cut(s) 228, 669, 805, 837, 916, 1024, 1126
LmnI GCTCC 3 cut(s) 394, 440, 604
Lsp1109I GCAGC 7 cut(s) 34, 235, 312, 880, 1058, 1192, 1418
LweI GCATC 6 cut(s) 730, 736, 880, 1216, 1326, 1351
MaeI CTAG 5 cut(s) 437, 617, 788, 803, 1254
MaeII ACGT 2 cut(s) 342, 1441
MaeIII GTNAC 2 cut(s) 287, 1285
MalI GATC 7 cut(s) 230, 671, 807, 839, 918, 1026, 1128
MboI GATC 7 cut(s) 228, 669, 805, 837, 916, 1024, 1126
MboII GAAGA 6 cut(s) 180, 223, 238, 1321, 1400, 1403
MflI RGATCY 4 cut(s) 228, 805, 916, 1126
MhlI GDGCHC 3 cut(s) 445, 609, 1189
MluCI AATT 9 cut(s) 25, 106, 159, 312, 425, 897, 933, 1143, 1455
MmeI TCCRAC 4 cut(s) 363, 748, 754, 894
Mph1103I ATGCAT 1 cut(s) 724
MroI TCCGGA 1 cut(s) 269
MroXI GAANNNNTTC 2 cut(s) 230, 1068
MseI TTAA 2 cut(s) 375, 924
MslI CAYNNNNRTG 3 cut(s) 411, 588, 732
MspI CCGG 3 cut(s) 235, 270, 1178
MspR9I CCNGG 3 cut(s) 1152, 1179, 1328
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 2 cut(s) 1152, 1328
MvnI CGCG 1 cut(s) 1284
MwoI GCNNNNNNNGC 6 cut(s) 219, 314, 323, 494, 1288, 1382
NciI CCSGG 1 cut(s) 1179
NcoI CCATGG 1 cut(s) 589
NdeI CATATG 1 cut(s) 412
NdeII GATC 7 cut(s) 228, 669, 805, 837, 916, 1024, 1126
NlaIV GGNNCC 3 cut(s) 390, 866, 918
NsiI ATGCAT 1 cut(s) 724
NspI RCATGY 1 cut(s) 497
NspV TTCGAA 1 cut(s) 1400
PaeI GCATGC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 1 cut(s) 638
PctI GAATGC 1 cut(s) 67
PdmI GAANNNNTTC 2 cut(s) 230, 1068
PfeI GAWTC 7 cut(s) 6, 19, 133, 450, 634, 1172, 1354
PflMI CCANNNNNTGG 2 cut(s) 171, 1270
PfoI TCCNGGA 1 cut(s) 1177
Psp6I CCWGG 2 cut(s) 1150, 1326
PspFI CCCAGC 1 cut(s) 238
PspGI CCWGG 2 cut(s) 1150, 1326
PspN4I GGNNCC 3 cut(s) 390, 866, 918
PspPI GGNCC 2 cut(s) 181, 194
PstI CTGCAG 1 cut(s) 1210
PsuI RGATCY 4 cut(s) 228, 805, 916, 1126
RsaI GTAC 2 cut(s) 866, 1011
RsaNI GTAC 2 cut(s) 865, 1010
RseI CAYNNNNRTG 3 cut(s) 411, 588, 732
SaqAI TTAA 2 cut(s) 375, 924
Sau3AI GATC 7 cut(s) 228, 669, 805, 837, 916, 1024, 1126
Sau96I GGNCC 2 cut(s) 181, 194
ScrFI CCNGG 3 cut(s) 1152, 1179, 1328
SduI GDGCHC 3 cut(s) 445, 609, 1189
SfaNI GCATC 6 cut(s) 730, 736, 880, 1216, 1326, 1351
SfcI CTRYAG 1 cut(s) 1206
SfuI TTCGAA 1 cut(s) 1400
SmiMI CAYNNNNRTG 3 cut(s) 411, 588, 732
SmlI CTYRAG 1 cut(s) 970
SmoI CTYRAG 1 cut(s) 970
SphI GCATGC 1 cut(s) 497
Sse9I AATT 9 cut(s) 25, 106, 159, 312, 425, 897, 933, 1143, 1455
SsiI CCGC 5 cut(s) 306, 324, 354, 579, 1229
SspI AATATT 1 cut(s) 1417
SspMI CTAG 5 cut(s) 437, 617, 788, 803, 1254
StyD4I CCNGG 3 cut(s) 1150, 1177, 1326
StyI CCWWGG 2 cut(s) 589, 787
TaiI ACGT 2 cut(s) 345, 1444
TaqI TCGA 6 cut(s) 641, 855, 945, 1334, 1357, 1400
TasI AATT 9 cut(s) 25, 106, 159, 312, 425, 897, 933, 1143, 1455
TatI WGTACW 1 cut(s) 1009
TauI GCSGC 3 cut(s) 326, 357, 1232
TfiI GAWTC 7 cut(s) 6, 19, 133, 450, 634, 1172, 1354
Tru1I TTAA 2 cut(s) 375, 924
Tru9I TTAA 2 cut(s) 375, 924
TseI GCWGC 7 cut(s) 47, 248, 300, 893, 1046, 1205, 1406
TspDTI ATGAA 4 cut(s) 725, 968, 981, 1412
Van91I CCANNNNNTGG 2 cut(s) 171, 1270
VneI GTGCAC 1 cut(s) 1185
XapI RAATTY 1 cut(s) 425
XbaI TCTAGA 2 cut(s) 802, 1253
XceI RCATGY 1 cut(s) 497
XcmI CCANNNNNNNNNTGG 1 cut(s) 910
XmaJI CCTAGG 1 cut(s) 787
XmnI GAANNNNTTC 2 cut(s) 230, 1068
XspI CTAG 5 cut(s) 437, 617, 788, 803, 1254
Zsp2I ATGCAT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.