RchiOBHm_Chr5g0024021

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006175
Physical Location & Seq
Forward (+)
18207952 .. 18211253
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1245 bp
ATGGAGGGTGGTCTGAGAGGTGACGGAACAGAAGAGCTTAAGGGTCTTCGAATCACCTCACTGGATGATGAGAGTGATGAAGAAGAACTACAACAGAAAGAAGAAATTGTTGTAGATGATGATGAGGAGGAAGAGGAAGAAGATGAAGAAGCAAGAGATTCTGTGGTTTTAGGTTTTGTGAAAAGGCCCAAAAAAGCCAGCTCTCTTCTACGCCATTTCTTCCCTTCAAAGGCTGGAGGAGTTCCTGCTTGGTTGGATCCAGAAAATTTGCCATCCGGAAGATCGTGTCTTTGTGATCTATGTGGTGAACCTTTGCAATTTATGCTTCAGGTGTATGCACCAGAGGAGAAGCCATCCACATTTCATCGAACATTGTTTGTTTTTATGTGTACGTCAATGGCGTGTCTTCGTCGAGATCAACATGAGCAATGGAAATGCCATCGGGACAACCCTTCCAGAAGTGTGAAGGTTTTCCGCTGCCAATTACCTCGTGATAATCCTTTCTACCCAAGTGAGCCCCCAAAGAAGGGTACTGAGCCTCCATTGGCTAGAGCTGCACTCTGCAATTGGTGTGGTACCTGGAAAGGGATTAAACGCTGTACTGGTTGCAGACAAACACTTTATTGCTCAGAGAAACATTGGGTCAAGCATTCCCGCTCCGGTCATGAATCTGACTGTCAGCGTATGAGGATAAGTTCTCAGTTGGTTGAAGGTAGCTCTGCTACCGCTGAAAACCCTTCTTCTGTAGTCCAGAAAGTTGCAAGCAAAGCTTTATGGCCTGAATACAAGATCATACAGGAGTTTGAAAGTGCTTATGACACACGGATGCCTGATGATAATGTGAATGCTAACTCCATGGTCTCTAGGAACCAGATGGATGATGGATTGATGTCAATAGCAGACAATTTCGCGGGTGATGGTGAGAAAAAGAGCTGGGCCTCATTTCAAGAGCGAATAGACCTGGCCCCTGAACAAGTATTAAGGTATTGTAGGAGTTCTGGTGCTAAACCCCTATGGCCCCTGACTAGCGGCCGACCATCAAAGGCTGACATTCCTAAATGCCATTATTGTGATGGTCCATTGTGTTTTGAATTTCAGATTTTGCCTCAGTTGCTATATTACTTTCATGTGAAGAATGATGCAGACTCTCTTGATTGGGCTACAATTGTTGTGTATACATGTGAAGCCTCTTGTGATGCCAGTGTGGCGTACAAAGAAGAATTTGCTTGGGTCCAAATTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C zf-MYND

Protein Analysis

414

Amino Acids

47.0

Weight (kDa)

5.11

Isoelectric Point (pI)

63.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD2_C PF04194 310 - 412 7.2e-33 Programmed cell death protein 2, C-terminal putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 575
AccBSI CCGCTC 1 cut(s) 657
AccI GTMKAC 1 cut(s) 1175
AccII CGCG 1 cut(s) 911
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 5 cut(s) 475, 655, 726, 911, 1029
AclWI GGATC 2 cut(s) 251, 264
AcoI YGGCCR 1 cut(s) 1030
AcsI RAATTY 4 cut(s) 265, 1091, 1220, 1236
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 5 cut(s) 391, 532, 577, 601, 1211
AfiI CCNNNNNNNGG 4 cut(s) 229, 526, 527, 585
AflII CTTAAG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 1178
AgsI TTSAA 5 cut(s) 228, 710, 806, 947, 1091
AjnI CCWGG 2 cut(s) 578, 960
AluBI AGCT 6 cut(s) 37, 201, 554, 717, 770, 933
AluI AGCT 6 cut(s) 37, 201, 554, 717, 770, 933
Alw26I GTCTC 1 cut(s) 865
AlwI GGATC 2 cut(s) 251, 264
Aor13HI TCCGGA 1 cut(s) 275
AoxI GGCC 6 cut(s) 185, 776, 936, 963, 1016, 1030
ApeKI GCWGC 2 cut(s) 477, 554
ApoI RAATTY 4 cut(s) 265, 1091, 1220, 1236
Asp700I GAANNNNTTC 1 cut(s) 470
Asp718I GGTACC 1 cut(s) 575
AspS9I GGNCC 6 cut(s) 186, 936, 964, 1017, 1076, 1231
AsuHPI GGTGA 5 cut(s) 32, 46, 317, 926, 932
AsuII TTCGAA 1 cut(s) 49
AvaII GGWCC 2 cut(s) 1076, 1231
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 519
BarI GAAGNNNNNNTAC 2 cut(s) 72, 104
BauI CACGAG 1 cut(s) 489
BbsI GAAGAC 2 cut(s) 38, 398
BbvI GCAGC 2 cut(s) 464, 541
BccI CCATC 8 cut(s) 280, 361, 447, 868, 875, 911, 1045, 1067
BciT130I CCWGG 2 cut(s) 580, 962
BcoDI GTCTC 1 cut(s) 865
BfaI CTAG 3 cut(s) 549, 864, 1026
BfmI CTRYAG 1 cut(s) 744
BfrI CTTAAG 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 1205
BisI GCNGC 3 cut(s) 478, 555, 1030
BlsI GCNGC 3 cut(s) 479, 556, 1031
Bme1390I CCNGG 2 cut(s) 580, 962
Bme18I GGWCC 2 cut(s) 1076, 1231
BmgT120I GGNCC 6 cut(s) 186, 936, 964, 1017, 1076, 1231
BmiI GGNNCC 6 cut(s) 258, 577, 869, 966, 1019, 1232
BmrFI CCNGG 2 cut(s) 580, 962
BmsI GCATC 3 cut(s) 816, 1129, 1186
BpiI GAAGAC 2 cut(s) 38, 398
BplI GAGNNNNNCTC 2 cut(s) 543, 575
BpmI CTGGAG 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 865
BsaJI CCNNGG 1 cut(s) 855
BsaWI WCCGGW 2 cut(s) 275, 659
BsaXI ACNNNNNCTCC 4 cut(s) 523, 553, 985, 1015
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 526, 527, 585
Bse1I ACTGG 3 cut(s) 66, 607, 1200
Bse3DI GCAATG 1 cut(s) 434
BseAI TCCGGA 1 cut(s) 275
BseBI CCWGG 2 cut(s) 580, 962
BseDI CCNNGG 1 cut(s) 855
BseGI GGATG 5 cut(s) 70, 272, 353, 831, 883
BseLI CCNNNNNNNGG 4 cut(s) 229, 526, 527, 585
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 5 cut(s) 5, 525, 642, 713, 1121
BseNI ACTGG 3 cut(s) 66, 607, 1200
BseRI GAGGAG 3 cut(s) 140, 252, 359
BseX3I CGGCCG 1 cut(s) 1030
BseXI GCAGC 2 cut(s) 464, 541
BseYI CCCAGC 1 cut(s) 933
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 1 cut(s) 911
Bsh1285I CGRYCG 1 cut(s) 1033
BshFI GGCC 6 cut(s) 187, 778, 938, 965, 1018, 1032
BshNI GGYRCC 1 cut(s) 575
BsiEI CGRYCG 1 cut(s) 1033
BsiSI CCGG 2 cut(s) 276, 660
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 4 cut(s) 229, 526, 527, 585
BsmAI GTCTC 1 cut(s) 865
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 2 cut(s) 649, 850
BsnI GGCC 6 cut(s) 187, 778, 938, 965, 1018, 1032
Bso31I GGTCTC 1 cut(s) 865
Bsp119I TTCGAA 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 519
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 5 cut(s) 256, 281, 295, 415, 789
Bsp19I CCATGG 1 cut(s) 855
BspACI CCGC 5 cut(s) 475, 655, 726, 911, 1029
BspANI GGCC 6 cut(s) 187, 778, 938, 965, 1018, 1032
BspCNI CTCAG 5 cut(s) 6, 526, 641, 712, 1120
BspEI TCCGGA 1 cut(s) 275
BspFNI CGCG 1 cut(s) 911
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 6 cut(s) 258, 577, 869, 966, 1019, 1232
BspPI GGATC 2 cut(s) 251, 264
BspQI GCTCTTC 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 575
BspTI CTTAAG 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 865
BsrBI CCGCTC 1 cut(s) 657
BsrDI GCAATG 1 cut(s) 434
BsrI ACTGG 3 cut(s) 66, 607, 1200
BssECI CCNNGG 1 cut(s) 855
BssMI GATC 5 cut(s) 256, 281, 295, 415, 789
BssNAI GTATAC 1 cut(s) 1176
BssSI CACGAG 1 cut(s) 489
BssT1I CCWWGG 1 cut(s) 855
Bst1107I GTATAC 1 cut(s) 1176
Bst2BI CACGAG 1 cut(s) 489
Bst2UI CCWGG 2 cut(s) 580, 962
Bst4CI ACNGT 1 cut(s) 677
Bst6I CTCTTC 3 cut(s) 27, 126, 210
BstAFI CTTAAG 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 322
BstBI TTCGAA 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 199, 763
BstDEI CTNAG 6 cut(s) 14, 534, 628, 699, 1107, 1242
BstDSI CCRYGG 1 cut(s) 855
BstF5I GGATG 5 cut(s) 70, 272, 353, 831, 883
BstFNI CGCG 1 cut(s) 911
BstKTI GATC 5 cut(s) 259, 284, 298, 418, 792
BstMAI GTCTC 1 cut(s) 865
BstMBI GATC 5 cut(s) 256, 281, 295, 415, 789
BstMCI CGRYCG 1 cut(s) 1033
BstMWI GCNNNNNNNGC 5 cut(s) 322, 554, 767, 1111, 1205
BstNI CCWGG 2 cut(s) 580, 962
BstNSI RCATGY 1 cut(s) 1182
BstSCI CCNGG 2 cut(s) 578, 960
BstSFI CTRYAG 1 cut(s) 744
BstUI CGCG 1 cut(s) 911
BstV1I GCAGC 2 cut(s) 464, 541
BstV2I GAAGAC 2 cut(s) 38, 398
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BstZ17I GTATAC 1 cut(s) 1176
BstZI CGGCCG 1 cut(s) 1030
BsuRI GGCC 6 cut(s) 187, 778, 938, 965, 1018, 1032
BtgI CCRYGG 1 cut(s) 855
BtsCI GGATG 5 cut(s) 70, 272, 353, 831, 883
BtsIMutI CAGTG 2 cut(s) 59, 1207
Cac8I GCNNGC 2 cut(s) 199, 763
CciI TCATGA 1 cut(s) 664
Cfr13I GGNCC 6 cut(s) 186, 936, 964, 1017, 1076, 1231
Csp6I GTAC 5 cut(s) 390, 531, 576, 600, 1210
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 5 cut(s) 422, 665, 856, 1127, 1179
CviQI GTAC 5 cut(s) 390, 531, 576, 600, 1210
DdeI CTNAG 6 cut(s) 14, 534, 628, 699, 1107, 1242
DpnI GATC 5 cut(s) 258, 283, 297, 417, 791
DpnII GATC 5 cut(s) 256, 281, 295, 415, 789
EaeI YGGCCR 1 cut(s) 1030
EagI CGGCCG 1 cut(s) 1030
Eam1104I CTCTTC 3 cut(s) 27, 126, 210
EarI CTCTTC 3 cut(s) 27, 126, 210
EclXI CGGCCG 1 cut(s) 1030
Eco130I CCWWGG 1 cut(s) 855
Eco24I GRGCYC 1 cut(s) 519
Eco31I GGTCTC 1 cut(s) 865
Eco47I GGWCC 2 cut(s) 1076, 1231
Eco52I CGGCCG 1 cut(s) 1030
Eco57I CTGAAG 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 578, 960
EcoT14I CCWWGG 1 cut(s) 855
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 855
FaeI CATG 5 cut(s) 425, 668, 859, 1130, 1182
FalI AAGNNNNNCTT 2 cut(s) 754, 786
FaqI GGGAC 1 cut(s) 458
FatI CATG 5 cut(s) 421, 664, 855, 1126, 1178
FauI CCCGC 2 cut(s) 662, 904
FblI GTMKAC 1 cut(s) 1175
Fnu4HI GCNGC 3 cut(s) 478, 555, 1030
FokI GGATG 5 cut(s) 77, 259, 340, 838, 890
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 3 cut(s) 478, 555, 1030
FspBI CTAG 3 cut(s) 549, 864, 1026
GluI GCNGC 3 cut(s) 478, 555, 1030
GsaI CCCAGC 1 cut(s) 937
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 6 cut(s) 187, 778, 938, 965, 1018, 1032
HapII CCGG 2 cut(s) 276, 660
Hin1II CATG 5 cut(s) 425, 668, 859, 1130, 1182
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 4 cut(s) 51, 158, 668, 1145
HpaII CCGG 2 cut(s) 276, 660
HphI GGTGA 5 cut(s) 32, 46, 317, 926, 932
Hpy166II GTNNAC 3 cut(s) 308, 390, 1176
Hpy188I TCNGA 4 cut(s) 15, 631, 673, 1098
Hpy8I GTNNAC 3 cut(s) 308, 390, 1176
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 6 cut(s) 234, 460, 462, 520, 704, 747
HpyCH4III ACNGT 1 cut(s) 677
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 7 cut(s) 316, 338, 557, 564, 609, 761, 1142
HpyF10VI GCNNNNNNNGC 5 cut(s) 322, 554, 767, 1111, 1205
HpyF3I CTNAG 6 cut(s) 14, 534, 628, 699, 1107, 1242
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 5 cut(s) 425, 668, 859, 1130, 1182
Kpn2I TCCGGA 1 cut(s) 275
KpnI GGTACC 1 cut(s) 579
Kzo9I GATC 5 cut(s) 256, 281, 295, 415, 789
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 662
Lsp1109I GCAGC 2 cut(s) 464, 541
LweI GCATC 3 cut(s) 816, 1129, 1186
MaeI CTAG 3 cut(s) 549, 864, 1026
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 20
MalI GATC 5 cut(s) 258, 283, 297, 417, 791
MbiI CCGCTC 1 cut(s) 657
MboI GATC 5 cut(s) 256, 281, 295, 415, 789
MfeI CAATTG 2 cut(s) 565, 1164
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 519
MlyI GAGTC 1 cut(s) 1139
MmeI TCCRAC 1 cut(s) 234
MroI TCCGGA 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 470
MseI TTAA 3 cut(s) 39, 591, 980
MslI CAYNNNNRTG 2 cut(s) 824, 1068
MspA1I CMGCKG 2 cut(s) 477, 728
MspCI CTTAAG 1 cut(s) 38
MspI CCGG 2 cut(s) 276, 660
MspR9I CCNGG 2 cut(s) 580, 962
MunI CAATTG 2 cut(s) 565, 1164
Mva1269I GAATGC 2 cut(s) 649, 850
MvaI CCWGG 2 cut(s) 580, 962
MvnI CGCG 1 cut(s) 911
MwoI GCNNNNNNNGC 5 cut(s) 322, 554, 767, 1111, 1205
NcoI CCATGG 1 cut(s) 855
NdeII GATC 5 cut(s) 256, 281, 295, 415, 789
NlaIII CATG 5 cut(s) 425, 668, 859, 1130, 1182
NlaIV GGNNCC 6 cut(s) 258, 577, 869, 966, 1019, 1232
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 1182
NspV TTCGAA 1 cut(s) 49
PagI TCATGA 1 cut(s) 664
PciI ACATGT 1 cut(s) 1178
PciSI GCTCTTC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 398
PctI GAATGC 2 cut(s) 649, 850
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 3 cut(s) 51, 158, 668
PkrI GCNGC 3 cut(s) 479, 556, 1031
PleI GAGTC 1 cut(s) 1139
PpsI GAGTC 1 cut(s) 1139
PscI ACATGT 1 cut(s) 1178
Psp6I CCWGG 2 cut(s) 578, 960
PspFI CCCAGC 1 cut(s) 933
PspGI CCWGG 2 cut(s) 578, 960
PspN4I GGNNCC 6 cut(s) 258, 577, 869, 966, 1019, 1232
PspPI GGNCC 6 cut(s) 186, 936, 964, 1017, 1076, 1231
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 5 cut(s) 391, 532, 577, 601, 1211
RsaNI GTAC 5 cut(s) 390, 531, 576, 600, 1210
RseI CAYNNNNRTG 2 cut(s) 824, 1068
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 3 cut(s) 39, 591, 980
SatI GCNGC 3 cut(s) 478, 555, 1030
Sau3AI GATC 5 cut(s) 256, 281, 295, 415, 789
Sau96I GGNCC 6 cut(s) 186, 936, 964, 1017, 1076, 1231
SchI GAGTC 1 cut(s) 1139
ScrFI CCNGG 2 cut(s) 580, 962
SduI GDGCHC 1 cut(s) 519
SfaNI GCATC 3 cut(s) 816, 1129, 1186
SfcI CTRYAG 1 cut(s) 744
SfuI TTCGAA 1 cut(s) 49
SinI GGWCC 2 cut(s) 1076, 1231
SmiMI CAYNNNNRTG 2 cut(s) 824, 1068
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SsiI CCGC 5 cut(s) 475, 655, 726, 911, 1029
SspMI CTAG 3 cut(s) 549, 864, 1026
StyD4I CCNGG 2 cut(s) 578, 960
StyI CCWWGG 1 cut(s) 855
TaaI ACNGT 1 cut(s) 677
TaiI ACGT 1 cut(s) 395
TaqI TCGA 3 cut(s) 49, 367, 412
TatI WGTACW 1 cut(s) 599
TauI GCSGC 1 cut(s) 1032
TfiI GAWTC 3 cut(s) 51, 158, 668
Tru1I TTAA 3 cut(s) 39, 591, 980
Tru9I TTAA 3 cut(s) 39, 591, 980
TscAI CASTG 2 cut(s) 66, 1207
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 477, 554
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 93, 159, 353, 681, 1115
TspGWI ACGGA 2 cut(s) 39, 838
TspRI CASTG 2 cut(s) 66, 1207
Vha464I CTTAAG 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 1076, 1231
XapI RAATTY 4 cut(s) 265, 1091, 1220, 1236
XceI RCATGY 1 cut(s) 1182
XcmI CCANNNNNNNNNTGG 2 cut(s) 878, 1070
XmiI GTMKAC 1 cut(s) 1175
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 3 cut(s) 549, 864, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.