Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006885

Physical Location & Seq

Genomic Coordinates Forward (+)

26556435 .. 26556755

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAAACAGCAGAACGCAAGTAAAGTCATCGTCAAGAAGATCGGTCTTGTTTATCAGATCAAAATCGCACCCAAGAAAATTGGGTTCAATGAGTTGGCTTACACCATTGATCTGATCAGGAAAGGAGAGGTCACGAAAGGGGCATACGAAGGAATAAGAAATGCATATATATATGCGATATTTTCGTTCAAGGTTGAGAATTTCGTGAAGATTGCGATGGGGAAGATGAATCCCCAAATTGCTTTCAATCCTTTCATCGAGGGCTTAAGTACTTGGTTCCAATCAATTTCTTCAAATACCAGTTACTTCAATTTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0019752 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0032502 GO:0032787 GO:0035556 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCP2

Protein Analysis

106

Amino Acids

12.01

Weight (kDa)

9.8

Isoelectric Point (pI)

15.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42890
fragaria_vesca	FvH4_2g34440 FvH4_2g34441
malus_domestica	MD00G1215600.v1.1 MD08G1101600.v1.1 MD15G1083000.v1.1
prunus_persica	Prupe.1G435500_v2.0.a1
pyrus_communis	pycom08g08210
rosa_chinensis	RchiOBHm_Chr5g0032801 RchiOBHm_Chr6g0307931
rosa_laevigata	RLG00000010686 RLG00000033429
rosa_multiflora	Rmu_sc0003252.1_g000020
rosa_roxburghii	Rroxscaffold_2G00127110 Rroxscaffold_7G00160760
rosa_rugosa	Rorug06G0361700 Rorug06G0361800 Rorug06G0361900
rosa_samantha	Rh5CG255500 Rh6AG470800 Rh6BG481800 Rh6CG487200 Rh6DG473300 Rh7DG462100
rosa_wichuraiana	Rw5G020780 Rw6G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	1 cut(s)	271
AflII	CTTAAG	1 cut(s)	265
AgsI	TTSAA	5 cut(s)	88, 190, 247, 294, 310
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	199
BccI	CCATC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	265
BmcAI	AGTACT	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	39, 57, 109, 114
BspLI	GGNNCC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	300
BssMI	GATC	4 cut(s)	39, 57, 109, 114
BstAFI	CTTAAG	1 cut(s)	265
BstKTI	GATC	4 cut(s)	42, 60, 112, 117
BstMBI	GATC	4 cut(s)	39, 57, 109, 114
BtgZI	GCGATG	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	270
CviJI	RGCY	3 cut(s)	98, 264, 317
CviKI_1	RGCY	3 cut(s)	98, 264, 317
CviQI	GTAC	1 cut(s)	270
DpnI	GATC	4 cut(s)	41, 59, 111, 116
DpnII	GATC	4 cut(s)	39, 57, 109, 114
EcoT22I	ATGCAT	1 cut(s)	166
FaiI	YATR	6 cut(s)	145, 166, 168, 170, 172, 174
FbaI	TGATCA	1 cut(s)	114
HinfI	GANTC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	57, 114
Hpy188III	TCNNGA	4 cut(s)	34, 118, 133, 205
HpyAV	CCTTC	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	39, 57, 109, 114
LpnPI	CCDG	2 cut(s)	103, 313
MaeIII	GTNAC	2 cut(s)	130, 302
MalI	GATC	4 cut(s)	41, 59, 111, 116
MboI	GATC	4 cut(s)	39, 57, 109, 114
MboII	GAAGA	4 cut(s)	49, 220, 235, 282
MluCI	AATT	5 cut(s)	78, 199, 237, 285, 310
MnlI	CCTC	2 cut(s)	121, 253
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	265
NdeII	GATC	4 cut(s)	39, 57, 109, 114
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	278
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	266
Sau3AI	GATC	4 cut(s)	39, 57, 109, 114
ScaI	AGTACT	1 cut(s)	271
SetI	ASST	3 cut(s)	132, 195, 319
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	5 cut(s)	78, 199, 237, 285, 310
TaqI	TCGA	1 cut(s)	258
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	5 cut(s)	78, 199, 237, 285, 310
TatI	WGTACW	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	17, 242, 244
Vha464I	CTTAAG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	199
ZrmI	AGTACT	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.