Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006239

Physical Location & Seq

Genomic Coordinates Forward (+)

26960190 .. 26967188

Gene Structure 6999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGAGGAACAACAACAAGAGCAATCAAAGCTCTGGCGCAGAAGAGCATCACTCCCAAACCCCTGAATCAAGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTGCTCAAAGGTCGCAGTATGCCAGGTAAAGTGTTACTGACTAGGAGATCAGAGCTGGTAGATCATTCAAACTCACAAGAACCGGCTCTAAATTATGAGAGGAGCTTCTCATACAATGATGCTGAAACAAGTGATAGCATATCTAAGGCATTGGAGGAAGCATTTGACAGCCCAAGTGAGCCGAACACCAATGAAAATGTAAATAAGTTGAAATCATCAGCCTCGAATGTTGAGAATACTTCCAAAGGAGCTCAGAAATCTGTTATTGGTGCTAGAGCAACTGATTCTGCTCGAGTTATGAAGTTCACAAAGGTCCTTTCTGGGACAACAGTCATATTAGAGAAGTTGCGTGAGTTGGCTTGGAGTGGCATACCACCATATATGCGACCTGATGTGTGGAGGCTTCTTTTGGGATATGCACCATCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGTCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCGGATACTGAGCGTTCAGATGATGAGATAAACATGCTTCGTCAGATTGCTGTTGATTGCCCAAGAACCGTGCCAGATGTGTCTTTTTTTCAGCAAGAACAAGTCCAGAAATCCTTGGAGCGCATCCTTTACACATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGAATAAATGATCTAGTTACTCCCTTTCTTGTGGTTTTCTTGTCAGAACACTTGGACGGTAGTGTGGATAGTTGGTCAATCTCCGTTCTGTCTACCGATCAAATATGTATAGTAGAAGCTGATTGCTATTGGTGCCTATCAAAGCTACTTGATGGTATGCAAGACCATTACACATTTGCTCAGCCAGGGATCCAGAGGCTTGTGTTTAAGTTAAAGGAATTGGTCAGGCGGATTGATGAACCTGTATCTAGACATGTGGAGGAGCAAGGGCTGGAATTTCTTCAGTTTGCTTTCCGGTGGTTCAACTGTCTTTTAATACGTGAGATTCCCTTCCATCTTATTTCCCGTCTGTGGGATACATATCTTGCTGAAGGAGATGCATTGCCAGATTTCCTTGTGTATATTTTTGCCAGTTTTCTTTTAACGTGGTCAGAGGAGCTCAAGAAGCTTGATTTCCAAGAATTGGTCATGTTTCTTCAACACCTACCAACTAATAACTGGACCGACCAGGAACTCGAGATGGTGCTTTCAAGAGCTTTCATGTGGCACAGTATGTTCAACAGCTCTCCCAGACATTTAGCCACCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

455

Amino Acids

52.39

Weight (kDa)

5.5

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	162 - 405	3.8e-48	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	298 - 421	4.1e-08	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30710
fragaria_vesca	FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760 FvH4_3g19760
malus_domestica	MD03G1229700.v1.1 MD04G1046900.v1.1 MD11G1250200.v1.1
prunus_persica	Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.1G201500_v2.0.a1 Prupe.4G179600_v2.0.a1 Prupe.4G179600_v2.0.a1
pyrus_communis	pycom03g17730 pycom04g04070
rosa_chinensis	RchiOBHm_Chr5g0033161
rosa_laevigata	RLG00000033452
rosa_multiflora	Rmu_sc0009377.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046810
rosa_rugosa	Rorug05G0137100
rosa_samantha	Rh5AG228900 Rh5BG230000 Rh5DG234700
rosa_wichuraiana	Rw5G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	909
AccB7I	CCANNNNNTGG	1 cut(s)	1240
AccI	GTMKAC	1 cut(s)	869
AccIII	TCCGGA	1 cut(s)	607
AciI	CCGC	1 cut(s)	1006
AclWI	GGATC	2 cut(s)	961, 974
AcsI	RAATTY	1 cut(s)	1052
AcuI	CTGAAG	2 cut(s)	1043, 1167
AfiI	CCNNNNNNNGG	4 cut(s)	764, 1128, 1129, 1240
AflIII	ACRYGT	1 cut(s)	1030
AgsI	TTSAA	8 cut(s)	76, 98, 171, 313, 1081, 1256, 1308, 1336
AjnI	CCWGG	3 cut(s)	124, 961, 1284
Alw21I	GWGCWC	2 cut(s)	355, 1218
AlwI	GGATC	2 cut(s)	961, 974
Ama87I	CYCGRG	2 cut(s)	393, 1292
Aor13HI	TCCGGA	1 cut(s)	607
AoxI	GGCC	1 cut(s)	744
ApoI	RAATTY	1 cut(s)	1052
Asp700I	GAANNNNTTC	1 cut(s)	1056
AspLEI	GCGC	2 cut(s)	38, 729
AspS9I	GGNCC	3 cut(s)	415, 744, 1278
AvaI	CYCGRG	2 cut(s)	393, 1292
AvaII	GGWCC	2 cut(s)	415, 1278
BamHI	GGATCC	1 cut(s)	966
BanI	GGYRCC	1 cut(s)	909
BanII	GRGCYC	2 cut(s)	355, 1218
Bbv12I	GWGCWC	2 cut(s)	355, 1218
BccI	CCATC	4 cut(s)	532, 923, 1119, 1291
BciT130I	CCWGG	3 cut(s)	126, 963, 1286
BciVI	GTATCC	2 cut(s)	604, 1126
BfaI	CTAG	4 cut(s)	144, 375, 791, 1026
BfuI	GTATCC	2 cut(s)	604, 1126
BlpI	GCTNAGC	1 cut(s)	957
Bme1390I	CCNGG	3 cut(s)	126, 963, 1286
Bme18I	GGWCC	2 cut(s)	415, 1278
BmeT110I	CYCGRG	2 cut(s)	393, 1292
BmgT120I	GGNCC	3 cut(s)	415, 744, 1278
BmiI	GGNNCC	2 cut(s)	911, 968
BmrFI	CCNGG	3 cut(s)	126, 963, 1286
BmsI	GCATC	4 cut(s)	55, 211, 738, 1144
BoxI	GACNNNNGTC	1 cut(s)	431
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
Bpu1102I	GCTNAGC	1 cut(s)	957
BpuEI	CTTGAG	2 cut(s)	590, 1202
BsaAI	YACGTR	1 cut(s)	1097
BsaBI	GATNNNNATC	1 cut(s)	1137
BsaJI	CCNNGG	2 cut(s)	720, 962
BsaWI	WCCGGW	2 cut(s)	607, 1071
Bsc4I	CCNNNNNNNGG	4 cut(s)	764, 1128, 1129, 1240
Bse118I	RCCGGY	2 cut(s)	184, 1361
Bse1I	ACTGG	2 cut(s)	1188, 1280
Bse3DI	GCAATG	1 cut(s)	1157
Bse8I	GATNNNNATC	1 cut(s)	1137
BseAI	TCCGGA	1 cut(s)	607
BseBI	CCWGG	3 cut(s)	126, 963, 1286
BseDI	CCNNGG	2 cut(s)	720, 962
BseGI	GGATG	2 cut(s)	729, 754
BseJI	GATNNNNATC	1 cut(s)	1137
BseLI	CCNNNNNNNGG	4 cut(s)	764, 1128, 1129, 1240
BseMI	GCAATG	1 cut(s)	1157
BseMII	CTCAG	5 cut(s)	100, 368, 605, 606, 971
BseNI	ACTGG	2 cut(s)	1188, 1280
BseRI	GAGGAG	3 cut(s)	217, 1052, 1226
BshFI	GGCC	1 cut(s)	746
BshNI	GGYRCC	1 cut(s)	909
BsiHKAI	GWGCWC	2 cut(s)	355, 1218
BsiHKCI	CYCGRG	2 cut(s)	393, 1292
BsiSI	CCGG	4 cut(s)	185, 608, 1072, 1362
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	4 cut(s)	764, 1128, 1129, 1240
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	746
BsoBI	CYCGRG	2 cut(s)	393, 1292
Bsp1286I	GDGCHC	2 cut(s)	355, 1218
Bsp13I	TCCGGA	1 cut(s)	607
Bsp143I	GATC	5 cut(s)	149, 163, 787, 874, 966
Bsp1720I	GCTNAGC	1 cut(s)	957
BspACI	CCGC	1 cut(s)	1006
BspANI	GGCC	1 cut(s)	746
BspCNI	CTCAG	5 cut(s)	99, 367, 604, 607, 970
BspEI	TCCGGA	1 cut(s)	607
BspLI	GGNNCC	2 cut(s)	911, 968
BspPI	GGATC	2 cut(s)	961, 974
BspQI	GCTCTTC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	909
BsrDI	GCAATG	1 cut(s)	1157
BsrFI	RCCGGY	2 cut(s)	184, 1361
BsrI	ACTGG	2 cut(s)	1188, 1280
BssAI	RCCGGY	2 cut(s)	184, 1361
BssECI	CCNNGG	2 cut(s)	720, 962
BssMI	GATC	5 cut(s)	149, 163, 787, 874, 966
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	3 cut(s)	126, 963, 1286
Bst4CI	ACNGT	6 cut(s)	433, 584, 676, 836, 1085, 1328
Bst6I	CTCTTC	1 cut(s)	36
BstBAI	YACGTR	1 cut(s)	1097
BstDEI	CTNAG	7 cut(s)	86, 246, 354, 554, 591, 615, 957
BstF5I	GGATG	2 cut(s)	729, 754
BstHHI	GCGC	2 cut(s)	38, 729
BstKTI	GATC	5 cut(s)	152, 166, 790, 877, 969
BstMBI	GATC	5 cut(s)	149, 163, 787, 874, 966
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 909, 1222
BstNI	CCWGG	3 cut(s)	126, 963, 1286
BstNSI	RCATGY	2 cut(s)	643, 1034
BstPAI	GACNNNNGTC	1 cut(s)	431
BstSCI	CCNGG	3 cut(s)	124, 961, 1284
BstX2I	RGATCY	1 cut(s)	966
BstYI	RGATCY	1 cut(s)	966
BsuI	GTATCC	2 cut(s)	604, 1126
BsuRI	GGCC	1 cut(s)	746
BtsCI	GGATG	2 cut(s)	729, 754
CfoI	GCGC	2 cut(s)	38, 729
Cfr10I	RCCGGY	2 cut(s)	184, 1361
Cfr13I	GGNCC	3 cut(s)	415, 744, 1278
CseI	GACGC	1 cut(s)	554
CviAII	CATG	5 cut(s)	640, 741, 1031, 1246, 1318
DdeI	CTNAG	7 cut(s)	86, 246, 354, 554, 591, 615, 957
DpnI	GATC	5 cut(s)	151, 165, 789, 876, 968
DpnII	GATC	5 cut(s)	149, 163, 787, 874, 966
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	1021
Ecl136II	GAGCTC	2 cut(s)	353, 1216
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	2 cut(s)	355, 1218
Eco47I	GGWCC	2 cut(s)	415, 1278
Eco53kI	GAGCTC	2 cut(s)	353, 1216
Eco57I	CTGAAG	2 cut(s)	1043, 1167
Eco88I	CYCGRG	2 cut(s)	393, 1292
EcoICRI	GAGCTC	2 cut(s)	353, 1216
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRII	CCWGG	3 cut(s)	124, 961, 1284
EcoT14I	CCWWGG	1 cut(s)	720
EcoT22I	ATGCAT	1 cut(s)	1159
EcoT38I	GRGCYC	2 cut(s)	355, 1218
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	5 cut(s)	643, 744, 1034, 1249, 1321
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	5 cut(s)	639, 740, 1030, 1245, 1317
FblI	GTMKAC	1 cut(s)	869
FokI	GGATG	2 cut(s)	716, 741
FriOI	GRGCYC	2 cut(s)	355, 1218
FspBI	CTAG	4 cut(s)	144, 375, 791, 1026
GlaI	GCGC	2 cut(s)	37, 728
HaeIII	GGCC	1 cut(s)	746
HapII	CCGG	4 cut(s)	185, 608, 1072, 1362
HgaI	GACGC	1 cut(s)	554
HhaI	GCGC	2 cut(s)	38, 729
Hin1II	CATG	5 cut(s)	643, 744, 1034, 1249, 1321
Hin6I	GCGC	2 cut(s)	36, 727
HinP1I	GCGC	2 cut(s)	36, 727
HindIII	AAGCTT	1 cut(s)	1223
HinfI	GANTC	4 cut(s)	65, 72, 386, 1102
HpaII	CCGG	4 cut(s)	185, 608, 1072, 1362
Hpy166II	GTNNAC	2 cut(s)	408, 870
Hpy188I	TCNGA	8 cut(s)	89, 154, 357, 535, 625, 651, 823, 1210
Hpy8I	GTNNAC	2 cut(s)	408, 870
HpyAV	CCTTC	4 cut(s)	534, 552, 1117, 1142
HpyCH4III	ACNGT	6 cut(s)	433, 584, 676, 836, 1085, 1328
HpyCH4IV	ACGT	2 cut(s)	1096, 1202
HpyCH4V	TGCA	4 cut(s)	521, 761, 937, 1157
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 909, 1222
HpyF3I	CTNAG	7 cut(s)	86, 246, 354, 554, 591, 615, 957
HpySE526I	ACGT	2 cut(s)	1096, 1202
Hsp92II	CATG	5 cut(s)	643, 744, 1034, 1249, 1321
HspAI	GCGC	2 cut(s)	36, 727
Kpn2I	TCCGGA	1 cut(s)	607
Kzo9I	GATC	5 cut(s)	149, 163, 787, 874, 966
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	5 cut(s)	204, 350, 724, 1039, 1213
LweI	GCATC	4 cut(s)	55, 211, 738, 1144
MaeI	CTAG	4 cut(s)	144, 375, 791, 1026
MaeII	ACGT	2 cut(s)	1096, 1202
MaeIII	GTNAC	2 cut(s)	135, 793
MalI	GATC	5 cut(s)	151, 165, 789, 876, 968
MboI	GATC	5 cut(s)	149, 163, 787, 874, 966
MboII	GAAGA	3 cut(s)	53, 1049, 1244
MflI	RGATCY	1 cut(s)	966
MhlI	GDGCHC	2 cut(s)	355, 1218
MluCI	AATT	5 cut(s)	193, 529, 995, 1052, 1238
MnlI	CCTC	9 cut(s)	95, 195, 250, 334, 495, 538, 966, 1030, 1204
Mph1103I	ATGCAT	1 cut(s)	1159
MroI	TCCGGA	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	1056
MseI	TTAA	4 cut(s)	984, 989, 1091, 1199
MspI	CCGG	4 cut(s)	185, 608, 1072, 1362
MspR9I	CCNGG	3 cut(s)	126, 963, 1286
MvaI	CCWGG	3 cut(s)	126, 963, 1286
MwoI	GCNNNNNNNGC	3 cut(s)	27, 909, 1222
NdeII	GATC	5 cut(s)	149, 163, 787, 874, 966
NlaIII	CATG	5 cut(s)	643, 744, 1034, 1249, 1321
NlaIV	GGNNCC	2 cut(s)	911, 968
NsiI	ATGCAT	1 cut(s)	1159
NspI	RCATGY	2 cut(s)	643, 1034
PaeR7I	CTCGAG	2 cut(s)	393, 1292
PciI	ACATGT	1 cut(s)	1030
PciSI	GCTCTTC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	1056
PfeI	GAWTC	4 cut(s)	65, 72, 386, 1102
PflMI	CCANNNNNTGG	1 cut(s)	1240
Ppu21I	YACGTR	1 cut(s)	1097
PpuMI	RGGWCCY	1 cut(s)	415
PscI	ACATGT	1 cut(s)	1030
PshAI	GACNNNNGTC	1 cut(s)	431
Psp124BI	GAGCTC	2 cut(s)	355, 1218
Psp5II	RGGWCCY	1 cut(s)	415
Psp6I	CCWGG	3 cut(s)	124, 961, 1284
PspGI	CCWGG	3 cut(s)	124, 961, 1284
PspN4I	GGNNCC	2 cut(s)	911, 968
PspPI	GGNCC	3 cut(s)	415, 744, 1278
PspPPI	RGGWCCY	1 cut(s)	415
PspXI	VCTCGAGB	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	966
SacI	GAGCTC	2 cut(s)	355, 1218
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	984, 989, 1091, 1199
Sau3AI	GATC	5 cut(s)	149, 163, 787, 874, 966
Sau96I	GGNCC	3 cut(s)	415, 744, 1278
ScrFI	CCNGG	3 cut(s)	126, 963, 1286
SduI	GDGCHC	2 cut(s)	355, 1218
SfaNI	GCATC	4 cut(s)	55, 211, 738, 1144
Sfr274I	CTCGAG	2 cut(s)	393, 1292
SinI	GGWCC	2 cut(s)	415, 1278
SlaI	CTCGAG	2 cut(s)	393, 1292
SmlI	CTYRAG	4 cut(s)	393, 569, 1217, 1292
SmoI	CTYRAG	4 cut(s)	393, 569, 1217, 1292
Sse9I	AATT	5 cut(s)	193, 529, 995, 1052, 1238
SsiI	CCGC	1 cut(s)	1006
SspMI	CTAG	4 cut(s)	144, 375, 791, 1026
SstI	GAGCTC	2 cut(s)	355, 1218
StyD4I	CCNGG	3 cut(s)	124, 961, 1284
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	6 cut(s)	433, 584, 676, 836, 1085, 1328
TaiI	ACGT	2 cut(s)	1099, 1205
TaqI	TCGA	4 cut(s)	326, 394, 751, 1293
TaqII	GACCGA	1 cut(s)	1295
TasI	AATT	5 cut(s)	193, 529, 995, 1052, 1238
TfiI	GAWTC	4 cut(s)	65, 72, 386, 1102
Tru1I	TTAA	4 cut(s)	984, 989, 1091, 1199
Tru9I	TTAA	4 cut(s)	984, 989, 1091, 1199
TspDTI	ATGAA	4 cut(s)	309, 416, 1029, 1306
TspGWI	ACGGA	1 cut(s)	850
Van91I	CCANNNNNTGG	1 cut(s)	1240
VpaK11BI	GGWCC	2 cut(s)	415, 1278
XapI	RAATTY	1 cut(s)	1052
XbaI	TCTAGA	1 cut(s)	1025
XceI	RCATGY	2 cut(s)	643, 1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1272
XhoI	CTCGAG	2 cut(s)	393, 1292
XmiI	GTMKAC	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	1056
XspI	CTAG	4 cut(s)	144, 375, 791, 1026
Zsp2I	ATGCAT	1 cut(s)	1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.