Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012354

Physical Location & Seq

Genomic Coordinates Forward (+)

35110739 .. 35112522

Gene Structure 1784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCTTTGTGGAGAGCTCGTGCGGTTTCGTCGGCGCTATTCAGTAGGCTTCTCAGCCGCTCCAGCGCCACCGACACCATCGCCGCCGCCGTCGCCCACCGCAGTTTCTCCACAGGGGGTACAAGTAGTCAGTTTTTTACTTATGACATTAATTCACAATACGGAAGTTGCATGCCGCTTTCTGCTATGCACATTCAAGCCAAAATACACAACATTGAGTTAAACCCTGGTCAAGGTGGCAAGTTAGTTCGGGCTCCGGGAACTTGTGCAAAGATTTTGAAAGAACCCACGTCGAAAGGTTGTCTTGTGAGACTGCCTTCTGGTGTTGAAAAGTGGATTGATTCCAAGTGCCGGGCCGTTATCGGTGAGGTCCCAAGTCAAGGCAAAAAGCCTAAGAAGCTCTATAAAGCTGGGCAAAGCCGGTGGTTAGGCATCAGACCAACAGTGCGAGGAGTGGCAATGAATCCATGTGATCATCCCCATGGTGGAGGGGAGGGCAAGAGCAAGAGTAGTGGTTCTCATGGAAAATGTTCTCGAACACCTTGGGGCAAGCCTTGTAAGGGTGGATACAAGACTGGACCCAACAAACGTAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

199

Amino Acids

21.29

Weight (kDa)

10.33

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_C	PF03947	54 - 182	1.8e-45	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44065 AT2G44065 AT2G44065
fragaria_vesca	FvH4_3g23010 FvH4_3g23010
malus_domestica	MD02G1002800.v1.1 MD05G1054100.v1.1
prunus_persica	Prupe.3G126000_v2.0.a1 Prupe.7G268400_v2.0.a1
pyrus_communis	pycom05g04430
rosa_chinensis	RchiOBHm_Chr5g0040401
rosa_laevigata	RLG00000033977
rosa_multiflora	Rmu_sc0004516.1_g000006
rosa_roxburghii	Rroxscaffold_1G00040200 Rroxscaffold_1G00040930
rosa_rugosa	Rorug05G0185100
rosa_samantha	Rh5BG276000 Rh5CG309300
rosa_wichuraiana	Rw5G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	60
AciI	CCGC	6 cut(s)	23, 58, 84, 87, 100, 176
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	5 cut(s)	233, 351, 380, 485, 560
AgsI	TTSAA	3 cut(s)	197, 280, 329
AjiI	CACGTC	1 cut(s)	291
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	3 cut(s)	17, 400, 410
AluI	AGCT	3 cut(s)	17, 400, 410
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	304
AoxI	GGCC	1 cut(s)	354
AseI	ATTAAT	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	529
AspLEI	GCGC	2 cut(s)	37, 68
AspS9I	GGNCC	3 cut(s)	354, 370, 578
AsuC2I	CCSGG	2 cut(s)	258, 353
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	370, 578
BanII	GRGCYC	2 cut(s)	19, 256
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	19
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	2 cut(s)	74, 341
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	560
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	2 cut(s)	258, 353
BcoDI	GTCTC	1 cut(s)	304
BfoI	RGCGCY	2 cut(s)	38, 69
BfuI	GTATCC	1 cut(s)	560
BisI	GCNGC	4 cut(s)	58, 84, 87, 176
BlsI	GCNGC	4 cut(s)	59, 85, 88, 177
Bme1390I	CCNGG	3 cut(s)	228, 258, 353
Bme18I	GGWCC	2 cut(s)	370, 578
BmgBI	CACGTC	1 cut(s)	291
BmgT120I	GGNCC	3 cut(s)	354, 370, 578
BmiI	GGNNCC	3 cut(s)	255, 372, 580
BmrFI	CCNGG	3 cut(s)	228, 258, 353
BmsI	GCATC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	46
BpuMI	CCSGG	2 cut(s)	258, 353
BsaJI	CCNNGG	3 cut(s)	226, 481, 542
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	5 cut(s)	233, 351, 380, 485, 560
Bse118I	RCCGGY	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	3 cut(s)	226, 481, 542
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	5 cut(s)	233, 351, 380, 485, 560
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	465
BseYI	CCCAGC	1 cut(s)	410
BshFI	GGCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	257, 352, 421
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	5 cut(s)	233, 351, 380, 485, 560
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	19, 256
Bsp143I	GATC	1 cut(s)	472
Bsp19I	CCATGG	1 cut(s)	481
BspACI	CCGC	6 cut(s)	23, 58, 84, 87, 100, 176
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	255, 372, 580
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	580
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	3 cut(s)	226, 481, 542
BssMI	GATC	1 cut(s)	472
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	481, 542
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	445
BstC8I	GCNNGC	2 cut(s)	173, 551
BstDEI	CTNAG	2 cut(s)	53, 393
BstDSI	CCRYGG	1 cut(s)	481
BstENI	CCTNNNNNAGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	475
BstH2I	RGCGCY	2 cut(s)	38, 69
BstHHI	GCGC	2 cut(s)	37, 68
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 92, 397
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	226, 256, 351
BsuI	GTATCC	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	481
BtgZI	GCGATG	1 cut(s)	64
BtrI	CACGTC	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	173, 551
CfoI	GCGC	2 cut(s)	37, 68
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	3 cut(s)	354, 370, 578
Csp6I	GTAC	1 cut(s)	120
CspCI	CAANNNNNGTGG	4 cut(s)	404, 439, 493, 528
CviAII	CATG	4 cut(s)	172, 468, 482, 521
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	53, 393
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	481, 542
Eco24I	GRGCYC	2 cut(s)	19, 256
Eco47I	GGWCC	2 cut(s)	370, 578
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	481, 542
EcoT38I	GRGCYC	2 cut(s)	19, 256
ErhI	CCWWGG	2 cut(s)	481, 542
FaeI	CATG	4 cut(s)	175, 471, 485, 524
FaiI	YATR	7 cut(s)	144, 173, 188, 405, 469, 483, 522
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	4 cut(s)	171, 467, 481, 520
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	58, 84, 87, 176
FokI	GGATG	1 cut(s)	462
FriOI	GRGCYC	2 cut(s)	19, 256
Fsp4HI	GCNGC	4 cut(s)	58, 84, 87, 176
GlaI	GCGC	2 cut(s)	36, 67
GluI	GCNGC	4 cut(s)	58, 84, 87, 176
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	46
HaeII	RGCGCY	2 cut(s)	38, 69
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	3 cut(s)	257, 352, 421
HhaI	GCGC	2 cut(s)	37, 68
Hin1II	CATG	4 cut(s)	175, 471, 485, 524
Hin6I	GCGC	2 cut(s)	35, 66
HinP1I	GCGC	2 cut(s)	35, 66
HinfI	GANTC	2 cut(s)	341, 463
HpaII	CCGG	3 cut(s)	257, 352, 421
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	1 cut(s)	437
Hpy188III	TCNNGA	1 cut(s)	534
Hpy99I	CGWCG	3 cut(s)	34, 95, 295
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	2 cut(s)	290, 589
HpyCH4V	TGCA	3 cut(s)	171, 190, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 92, 397
HpyF3I	CTNAG	2 cut(s)	53, 393
HpySE526I	ACGT	2 cut(s)	290, 589
Hsp92II	CATG	4 cut(s)	175, 471, 485, 524
HspAI	GCGC	2 cut(s)	35, 66
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	2 cut(s)	65, 259
LweI	GCATC	1 cut(s)	441
MaeII	ACGT	2 cut(s)	290, 589
MalI	GATC	1 cut(s)	474
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	472
MhlI	GDGCHC	2 cut(s)	19, 256
MluCI	AATT	1 cut(s)	151
MnlI	CCTC	4 cut(s)	361, 443, 482, 487
MroXI	GAANNNNTTC	1 cut(s)	529
MseI	TTAA	2 cut(s)	150, 221
MslI	CAYNNNNRTG	1 cut(s)	480
MspI	CCGG	3 cut(s)	257, 352, 421
MspR9I	CCNGG	3 cut(s)	228, 258, 353
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	63, 92, 397
NciI	CCSGG	2 cut(s)	258, 353
NcoI	CCATGG	1 cut(s)	481
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	4 cut(s)	175, 471, 485, 524
NlaIV	GGNNCC	3 cut(s)	255, 372, 580
NspI	RCATGY	1 cut(s)	175
PaeI	GCATGC	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	341, 463
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	4 cut(s)	59, 85, 88, 177
PpuMI	RGGWCCY	1 cut(s)	370
PshBI	ATTAAT	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	255, 372, 580
PspPI	GGNCC	3 cut(s)	354, 370, 578
PspPPI	RGGWCCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	480
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	150, 221
SatI	GCNGC	4 cut(s)	58, 84, 87, 176
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	3 cut(s)	354, 370, 578
ScrFI	CCNGG	3 cut(s)	228, 258, 353
SduI	GDGCHC	2 cut(s)	19, 256
SetI	ASST	9 cut(s)	19, 238, 293, 301, 372, 402, 412, 544, 592
SfaNI	GCATC	1 cut(s)	441
SinI	GGWCC	2 cut(s)	370, 578
SmiMI	CAYNNNNRTG	1 cut(s)	480
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	6 cut(s)	23, 58, 84, 87, 100, 176
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	3 cut(s)	226, 256, 351
StyI	CCWWGG	2 cut(s)	481, 542
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	2 cut(s)	293, 592
TaqI	TCGA	2 cut(s)	293, 535
TasI	AATT	1 cut(s)	151
TauI	GCSGC	4 cut(s)	60, 86, 89, 178
TfiI	GAWTC	2 cut(s)	341, 463
Tru1I	TTAA	2 cut(s)	150, 221
Tru9I	TTAA	2 cut(s)	150, 221
TscAI	CASTG	1 cut(s)	450
TspDTI	ATGAA	1 cut(s)	476
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	450
VpaK11BI	GGWCC	2 cut(s)	370, 578
VspI	ATTAAT	1 cut(s)	150
XagI	CCTNNNNNAGG	1 cut(s)	231
XceI	RCATGY	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.