Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002530

Physical Location & Seq

Genomic Coordinates Reverse (-)

35161615 .. 35163169

Gene Structure 1555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACATGCATTCGACAAGGTCATCGAGTTGGAGTTTCTTATTATGATTCCAGTATTCACCAACTTCACGTGATGGAAGTTTGGGAAGATGGCAGCATGGACTTCCCCCTAATTGATATGGTGAAATATCAAGCTAAGCCACTGATCATCTACACAAGCACAAAAGGCGAGGAAGCTTTCTTGTCTGCTTTACAACGAAGTGATGGAACAACAGAGGCTTTTACTGTGAAGCTTGTGAAAAGTTCAGTATTTAGCTATGAGCAAGCATGGCACAGATTGATATACATTCGAGTAACAGGAATGGATGATGGGTTAGACATCAAGGAGAGAATTTGTTATTTGAGTTCTATGATGGACGTGGGAAGTGATGTTCAAGTTCGTACCAGTGGAGGCCTTCTTGCCATATTAGAGAATGAAAGGATTGTAGACACACTTGAACAAATGGAATGCAGCAATGCATCTATTGCAATTGATTCTGTTATAGAAGTTTCATTGTATCTTTTTATGTGTCTTTGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000710 GO:0000712 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0010777 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042623 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_III MutS_IV MutS_V

Protein Analysis

173

Amino Acids

19.57

Weight (kDa)

4.72

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20475 AT3G20475 AT3G20475
fragaria_vesca	FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000
malus_domestica	MD11G1214700.v1.1
prunus_persica	Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0040391 RchiOBHm_Chr5g0040451
rosa_laevigata	RLG00000033976
rosa_multiflora	Rmu_sc0004516.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040210 Rroxscaffold_1G00040250 Rroxscaffold_1G00040300 Rroxscaffold_1G00040940
rosa_rugosa	Rorug05G0184700
rosa_samantha	Rh5AG272000 Rh5BG275900 Rh5CG308000 Rh5DG284100
rosa_wichuraiana	Rw5G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	330
AcvI	CACGTG	1 cut(s)	70
AfaI	GTAC	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	374, 437
AjiI	CACGTC	1 cut(s)	358
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	4 cut(s)	134, 176, 232, 255
AluI	AGCT	4 cut(s)	134, 176, 232, 255
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	93, 450
ApoI	RAATTY	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	50, 133
BbrPI	CACGTG	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	105, 462
BccI	CCATC	5 cut(s)	67, 83, 197, 302, 346
BclI	TGATCA	1 cut(s)	144
BisI	GCNGC	2 cut(s)	94, 451
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	2 cut(s)	95, 452
BmgBI	CACGTC	1 cut(s)	358
BmsI	GCATC	1 cut(s)	467
Bpu1102I	GCTNAGC	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	51, 384
Bse3DI	GCAATG	1 cut(s)	460
BseGI	GGATG	1 cut(s)	310
BseMI	GCAATG	1 cut(s)	460
BseNI	ACTGG	2 cut(s)	51, 384
BseXI	GCAGC	2 cut(s)	105, 462
BshFI	GGCC	1 cut(s)	393
BsmI	GAATGC	2 cut(s)	9, 452
BsnI	GGCC	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	144
Bsp1720I	GCTNAGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	51, 384
BssMI	GATC	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 268, 464
BstNSI	RCATGY	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	105, 462
BsuRI	GGCC	1 cut(s)	393
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	140, 391
Cac8I	GCNNGC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	3 cut(s)	6, 97, 267
CviJI	RGCY	7 cut(s)	134, 139, 176, 218, 232, 255, 393
CviKI_1	RGCY	7 cut(s)	134, 139, 176, 218, 232, 255, 393
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	393
Eco72I	CACGTG	1 cut(s)	70
EcoT22I	ATGCAT	2 cut(s)	11, 460
FaeI	CATG	3 cut(s)	9, 100, 270
FatI	CATG	3 cut(s)	5, 96, 266
FbaI	TGATCA	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	94, 451
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	2 cut(s)	94, 451
GluI	GCNGC	2 cut(s)	94, 451
HaeIII	GGCC	1 cut(s)	393
Hin1II	CATG	3 cut(s)	9, 100, 270
HindIII	AAGCTT	2 cut(s)	174, 230
HinfI	GANTC	2 cut(s)	47, 473
HphI	GGTGA	2 cut(s)	50, 133
Hpy166II	GTNNAC	1 cut(s)	427
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	69, 357
HpyCH4V	TGCA	4 cut(s)	9, 450, 458, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 268, 464
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	2 cut(s)	69, 357
Hsp92II	CATG	3 cut(s)	9, 100, 270
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	144
LpnPI	CCDG	3 cut(s)	64, 282, 397
Lsp1109I	GCAGC	2 cut(s)	105, 462
LweI	GCATC	1 cut(s)	467
MaeII	ACGT	2 cut(s)	69, 357
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	1 cut(s)	98
MfeI	CAATTG	1 cut(s)	468
MluCI	AATT	3 cut(s)	111, 330, 468
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	3 cut(s)	163, 208, 383
Mph1103I	ATGCAT	2 cut(s)	11, 460
MunI	CAATTG	1 cut(s)	468
Mva1269I	GAATGC	2 cut(s)	9, 452
MwoI	GCNNNNNNNGC	3 cut(s)	165, 268, 464
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	3 cut(s)	9, 100, 270
NsiI	ATGCAT	2 cut(s)	11, 460
NspI	RCATGY	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	393
PctI	GAATGC	2 cut(s)	9, 452
PfeI	GAWTC	2 cut(s)	47, 473
PflFI	GACNNNGTC	1 cut(s)	18
PkrI	GCNGC	2 cut(s)	95, 452
PmaCI	CACGTG	1 cut(s)	70
PmlI	CACGTG	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	70
PspCI	CACGTG	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SatI	GCNGC	2 cut(s)	94, 451
Sau3AI	GATC	1 cut(s)	144
SetI	ASST	7 cut(s)	22, 72, 136, 178, 234, 257, 360
SfaNI	GCATC	1 cut(s)	467
Sse9I	AATT	3 cut(s)	111, 330, 468
SseBI	AGGCCT	1 cut(s)	393
StuI	AGGCCT	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	2 cut(s)	72, 360
TaqI	TCGA	3 cut(s)	13, 25, 289
TasI	AATT	3 cut(s)	111, 330, 468
TfiI	GAWTC	2 cut(s)	47, 473
TscAI	CASTG	2 cut(s)	147, 391
TseI	GCWGC	2 cut(s)	93, 450
TspDTI	ATGAA	2 cut(s)	429, 480
TspRI	CASTG	2 cut(s)	147, 391
Tth111I	GACNNNGTC	1 cut(s)	18
XapI	RAATTY	1 cut(s)	330
XceI	RCATGY	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	426
Zsp2I	ATGCAT	2 cut(s)	11, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.