RchiOBHm_Chr5g0040821

UPF0505 protein C16orf62 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007890
Physical Location & Seq
Reverse (-)
35435346 .. 35447702
12357 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2766 bp
ATGCTCTCCAACTCCATGGAGTTCAGACCTCGCAATTACACTGCCGAGAAACAAGCCCACGCGCTTCCTCGATCACGCGCCGACGGTCATCCTCTCTCCGCTCCATCGTCTCCACCTCGCCACCAGGTTGAGGTTGTTGATGATGGGGACACCGACTATCTTGACCCGCTCAGAAGGTCAGATAACAATGCAGCAGTTTCTATAGAGGATTTGGAAGGCATTGAAGACAGTTCTGCTTCGGGACTCTCCAGTGAAGCTTCGATTCAAAATCCATCAAAAGAATGGGTCTCTTTTAAGAGGTCACTGATGCAGCGGTTTCCGGTCTCCAAAACCGTTTTGACTTCTTCAATGTCCGATGTGATAGTGAAAGGCAGGAAAACATTTGACAAATCTTCAACAAATATGCATTTGGAGGAACTGGAAGATCCAGAAAAATTTGCAGAAGAGGGTGGCAAAGTCATCACAGGACAGGAATATGTTTCCCGGTTACACGAGCTCAAAGCTGAAATAAATCACACTTGGCATGCTGATGATCGTGTGACATCTTTGAAATTATCAATAAAAGTAGCTAAGCTTTTGATGGATACATCTATTTTACAATGTTATCCTACACTTTTTGTACTTGCTACGGATATTATGGATATGCTTGGGGATATGGTGTGGGAACGCATCAAGTTGAAAGCTGAATTAGCTGAAGATGGAACCAAACTCTGCTTGTTACCAGAGAACTTCATGGCGAGTGATATTTGCTCCGATGCCAAAGAAACTTGCAATAATTGGTTCAGCAAAATTGGTGCAATCCGAGAGCTTCTTCCACGTATTTATTTGGAGCTCGCATTATTGCCTTGCTGGCGTTTCTTGCATGATCGACCTCTAGACTGTCTTCAGCGCTTGGTAATGATGACAAGAGGGTTAGCAGATCCATTGGCATCTGCCTACTGTCGCTTGTATATGGCCCATTGTTTTAGAAAGTTGCACTCTCATGATATAGGATGTCTGCTTACCTGCGTTAATGACTTCAAAATTTTGTTGATGCGGGTGATATCGGCAAAGGAAACATTTCACAGAAAGTTGACTGAAAACAAAAGATTGCTTATCAGTCTAATGGAACCAACCATTGATTATATCATGAAATGCATATTTAAAAATGTGTCCGAGGTAAATGATGTACTAGTGGAGCTTGGGCTTGGATCTAATCAAGTGGAGCTGCGTGGAAGGTTCCCATGCGCCTCAATTATCCTTCATCATCTAGTCAAGCAACTTCCCTCGCAAGTAGTTAGCTCAAGTGCTATGGAGATCATTCAGCTCATTGACTCCAGCAATGATGATTCCTATGATCAGTGCTTGAATTACAGGTTACTTGGATTTAGGCTGTGTGAAAGAAAATCTGAAATGGGCACTGTCAATGCTGTGGTGGACAAAATCATTCAGGTTATTACTCAATATGAAGGCCTTGATGAGTACTTGAAGGTTGTGGATGCTTATGTGGACATTTTCCTTCAAAATCATATGGATGACCACCTGAACTCCATTTTGGAAGGTATTTCAAACCGAGCATGCAGTCAAGGGATTGCTGAAGATGAACTGACGACCTTGCAGTCTATCTTGGTGAAGCTTCTTTCTTATTACGAGGATTTACAAGACGTAATTGCTATGACCCCTTTTCTGAAGATCTTGGATTTAATGCATGGAAGTTCACAAAGCATCGTCAATATGCAGATCCTTGACATGGGGATAAGGAATGGTTATATACGTGATCGGACAACTATACAGTTTCTTTTTGAAATTTCCCAGGCTCTACATGATGATGAAATTTTTGTGAATGTAAAAGATGATTCTAACCAAGCAGCACGTTTGATTTCTTCTTTTGTCTCACTGGTTGATTATGGGGGAGAGTTGGAAAGTCATTTGACCTTCTTAGTTGAATGCCGTGCAGCTTTTGGTAGCATACACTGGCTTAAGGAAACGCTTGTTCACTCGAGTAATTGCTTAGCAATTAAGGCTCTGAAAGATGGGAGTAGACATATCAGTTTTATCAAATCCTGCATAGCATTTTCTGAAGTCACATTACCTTCTATTTCAGCTCAGACTAAGCAGTTAAATCTGTATCTTGAGACTGCAGAGGTAGCCTTACTTGGTGGTCTAGTTTCACATTCAGATGGACTGATTGACTCAGCAATCAACTCTTTGCAAATTTCAGAAGTGATGGATGGGTCCAGAACACCAACTGATGCTGATGGAATACTCTCCTCAATTCTAAAGTTATTCAGCCTCTTGGTTATGGTTCCAGGTAATCCTGAGCATGGAGTTACTTTCTATCCAAAGAACTTGGTATCGCTTGTAAATTCTCAGCCATGGATGCCACCAAGAATGAGAGTGAAGATTTTTTGTGCAGTTGTTTCTCTGTTAGCGGCACTATCTCAACGAGATCTGCCTTATCATGCAGATAAGGGAAAGCTTCTAGGAAACGACATACTGTTCTTTGGTCATTCATTGTATTTAAGTGAGCTTGCCTTGATGTGCAAGTTTGTTCTTCAGAACCTGGTTGATACTATTCAACAAGAACCTTCCAAGGCTGCTCGTGGAAGTATGGCGCTTGAAGCTTGCAACTGCATTGCATCATCTTTCATTCCAAGTCAGGAAATATCCTCAATTTGCGCCAATCTAATAGAAACTGGGAAGTCGTGTATGGGCACCAGCCACCCGTATCTGCTATCGACAATCAAATTTACGGATCAGTTACTGCTTCCTTCTATTGCAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps35

Protein Analysis

921

Amino Acids

102.94

Weight (kDa)

5.45

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps35 PF03635 427 - 714 2.7e-07 Vacuolar protein sorting-associated protein 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1597
Acc36I ACCTGC 1 cut(s) 1013
AccB1I GGYRCC 1 cut(s) 2693
AccBSI CCGCTC 2 cut(s) 101, 169
AccI GTMKAC 1 cut(s) 2020
AccII CGCG 2 cut(s) 62, 78
AciI CCGC 5 cut(s) 99, 167, 313, 1036, 2411
AclWI GGATC 5 cut(s) 419, 914, 1198, 1714, 2742
AcsI RAATTY 7 cut(s) 434, 1023, 1785, 1812, 2193, 2344, 2726
AcuI CTGAAG 6 cut(s) 714, 869, 1596, 1688, 2079, 2519
AfaI GTAC 3 cut(s) 621, 1170, 1463
AfeI AGCGCT 1 cut(s) 890
AfiI CCNNNNNNNGG 3 cut(s) 130, 1729, 2303
AflII CTTAAG 1 cut(s) 1958
AhlI ACTAGT 1 cut(s) 1171
AjnI CCWGG 4 cut(s) 123, 1791, 2287, 2541
AjuI GAANNNNNNNTTGG 2 cut(s) 1517, 1549
Alw21I GWGCWC 2 cut(s) 498, 834
Alw26I GTCTC 5 cut(s) 114, 292, 328, 1876, 2108
AlwI GGATC 5 cut(s) 419, 914, 1198, 1714, 2742
AlwNI CAGNNNCTG 2 cut(s) 2542, 2743
Ama87I CYCGRG 1 cut(s) 1978
Aor51HI AGCGCT 1 cut(s) 890
AoxI GGCC 2 cut(s) 954, 1450
ApeKI GCWGC 6 cut(s) 191, 310, 1207, 1847, 1934, 2576
ApoI RAATTY 7 cut(s) 434, 1023, 1785, 1812, 2193, 2344, 2726
Asp700I GAANNNNTTC 1 cut(s) 1059
AspLEI GCGC 6 cut(s) 64, 80, 891, 1229, 2596, 2660
AspS9I GGNCC 2 cut(s) 955, 2214
AsuC2I CCSGG 1 cut(s) 484
AsuHPI GGTGA 2 cut(s) 1051, 1621
AvaI CYCGRG 1 cut(s) 1978
AvaII GGWCC 1 cut(s) 2214
BaeGI GKGCMC 2 cut(s) 1400, 2696
BanI GGYRCC 1 cut(s) 2693
BanII GRGCYC 2 cut(s) 498, 834
BarI GAAGNNNNNNTAC 2 cut(s) 2052, 2084
BauI CACGAG 2 cut(s) 491, 2580
BbsI GAAGAC 2 cut(s) 231, 875
Bbv12I GWGCWC 2 cut(s) 498, 834
BbvI GCAGC 6 cut(s) 203, 322, 1194, 1859, 1946, 2563
BceAI ACGGC 1 cut(s) 1914
BciT130I CCWGG 4 cut(s) 125, 1793, 2289, 2543
BciVI GTATCC 1 cut(s) 577
BclI TGATCA 1 cut(s) 1336
BcnI CCSGG 1 cut(s) 484
BcoDI GTCTC 5 cut(s) 114, 292, 328, 1876, 2108
BcuI ACTAGT 1 cut(s) 1171
BfaI CTAG 5 cut(s) 875, 1172, 1250, 2144, 2462
BfmI CTRYAG 2 cut(s) 201, 2118
BfoI RGCGCY 2 cut(s) 892, 2597
BfrI CTTAAG 1 cut(s) 1958
BfuAI ACCTGC 1 cut(s) 1013
BfuI GTATCC 1 cut(s) 577
BglI GCCNNNNNGGC 1 cut(s) 850
BglII AGATCT 2 cut(s) 1671, 2428
BisI GCNGC 7 cut(s) 192, 311, 1208, 1848, 1935, 2412, 2577
BlpI GCTNAGC 2 cut(s) 570, 1990
BlsI GCNGC 7 cut(s) 193, 312, 1209, 1849, 1936, 2413, 2578
BmcAI AGTACT 1 cut(s) 1463
Bme1390I CCNGG 5 cut(s) 125, 484, 1793, 2289, 2543
Bme18I GGWCC 1 cut(s) 2214
BmeT110I CYCGRG 1 cut(s) 1978
BmgT120I GGNCC 2 cut(s) 955, 2214
BmiI GGNNCC 6 cut(s) 703, 1110, 1220, 2215, 2286, 2695
BmrFI CCNGG 5 cut(s) 125, 484, 1793, 2289, 2543
BmrI ACTGGG 1 cut(s) 2685
BmuI ACTGGG 1 cut(s) 2685
BpiI GAAGAC 2 cut(s) 231, 875
BpmI CTGGAG 2 cut(s) 232, 1300
Bpu10I CCTNAGC 1 cut(s) 2298
Bpu1102I GCTNAGC 2 cut(s) 570, 1990
BpuEI CTTGAG 2 cut(s) 1267, 2132
BpuMI CCSGG 1 cut(s) 484
BsaAI YACGTR 2 cut(s) 818, 1754
BsaI GGTCTC 2 cut(s) 292, 328
BsaJI CCNNGG 5 cut(s) 15, 1155, 1791, 2354, 2571
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 1511, 1541
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 1729, 2303
Bse1I ACTGG 5 cut(s) 249, 423, 1881, 1958, 2680
Bse3DI GCAATG 2 cut(s) 1327, 2613
BseBI CCWGG 4 cut(s) 125, 1793, 2289, 2543
BseDI CCNNGG 5 cut(s) 15, 1155, 1791, 2354, 2571
BseGI GGATG 6 cut(s) 88, 998, 1483, 1519, 2215, 2364
BseLI CCNNNNNNNGG 3 cut(s) 130, 1729, 2303
BseMI GCAATG 2 cut(s) 1327, 2613
BseMII CTCAG 5 cut(s) 184, 2099, 2187, 2289, 2363
BseNI ACTGG 5 cut(s) 249, 423, 1881, 1958, 2680
BseRI GAGGAG 1 cut(s) 2239
BseSI GKGCMC 2 cut(s) 1400, 2696
BseXI GCAGC 6 cut(s) 203, 322, 1194, 1859, 1946, 2563
BsgI GTGCAG 2 cut(s) 1953, 2412
Bsh1236I CGCG 2 cut(s) 62, 78
BshFI GGCC 2 cut(s) 956, 1452
BshNI GGYRCC 1 cut(s) 2693
BsiHKAI GWGCWC 2 cut(s) 498, 834
BsiHKCI CYCGRG 1 cut(s) 1978
BsiSI CCGG 2 cut(s) 320, 484
BslFI GGGAC 2 cut(s) 161, 255
BslI CCNNNNNNNGG 3 cut(s) 130, 1729, 2303
BsmAI GTCTC 5 cut(s) 114, 292, 328, 1876, 2108
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 161, 255
BsmI GAATGC 1 cut(s) 1931
BsnI GGCC 2 cut(s) 956, 1452
Bso31I GGTCTC 2 cut(s) 292, 328
BsoBI CYCGRG 1 cut(s) 1978
Bsp1286I GDGCHC 4 cut(s) 498, 834, 1400, 2696
Bsp1720I GCTNAGC 2 cut(s) 570, 1990
Bsp19I CCATGG 2 cut(s) 15, 2354
BspACI CCGC 5 cut(s) 99, 167, 313, 1036, 2411
BspANI GGCC 2 cut(s) 956, 1452
BspCNI CTCAG 5 cut(s) 183, 2098, 2186, 2290, 2362
BspFNI CGCG 2 cut(s) 62, 78
BspHI TCATGA 2 cut(s) 982, 1128
BspLI GGNNCC 6 cut(s) 703, 1110, 1220, 2215, 2286, 2695
BspMAI CTGCAG 1 cut(s) 2122
BspMI ACCTGC 1 cut(s) 1013
BspPI GGATC 5 cut(s) 419, 914, 1198, 1714, 2742
BspT107I GGYRCC 1 cut(s) 2693
BspTI CTTAAG 1 cut(s) 1958
BspTNI GGTCTC 2 cut(s) 292, 328
BsrBI CCGCTC 2 cut(s) 101, 169
BsrDI GCAATG 2 cut(s) 1327, 2613
BsrI ACTGG 5 cut(s) 249, 423, 1881, 1958, 2680
BssECI CCNNGG 5 cut(s) 15, 1155, 1791, 2354, 2571
BssSI CACGAG 2 cut(s) 491, 2580
BssT1I CCWWGG 3 cut(s) 15, 2354, 2571
Bst2BI CACGAG 2 cut(s) 491, 2580
Bst2UI CCWGG 4 cut(s) 125, 1793, 2289, 2543
Bst4CI ACNGT 8 cut(s) 86, 230, 334, 881, 941, 1402, 1773, 2478
Bst6I CTCTTC 1 cut(s) 438
BstAFI CTTAAG 1 cut(s) 1958
BstBAI YACGTR 2 cut(s) 818, 1754
BstC8I GCNNGC 6 cut(s) 525, 834, 851, 1558, 2511, 2605
BstDEI CTNAG 9 cut(s) 170, 570, 1918, 1990, 2085, 2091, 2173, 2298, 2349
BstDSI CCRYGG 2 cut(s) 15, 2354
BstF5I GGATG 6 cut(s) 88, 998, 1483, 1519, 2215, 2364
BstFNI CGCG 2 cut(s) 62, 78
BstH2I RGCGCY 2 cut(s) 892, 2597
BstHHI GCGC 6 cut(s) 64, 80, 891, 1229, 2596, 2660
BstMAI GTCTC 5 cut(s) 114, 292, 328, 1876, 2108
BstMWI GCNNNNNNNGC 7 cut(s) 689, 850, 859, 2000, 2126, 2359, 2600
BstNI CCWGG 4 cut(s) 125, 1793, 2289, 2543
BstNSI RCATGY 2 cut(s) 527, 1560
BstSCI CCNGG 5 cut(s) 123, 482, 1791, 2287, 2541
BstSFI CTRYAG 2 cut(s) 201, 2118
BstSLI GKGCMC 2 cut(s) 1400, 2696
BstUI CGCG 2 cut(s) 62, 78
BstV1I GCAGC 6 cut(s) 203, 322, 1194, 1859, 1946, 2563
BstV2I GAAGAC 2 cut(s) 231, 875
BstX2I RGATCY 6 cut(s) 424, 919, 1190, 1671, 1719, 2428
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 6 cut(s) 424, 919, 1190, 1671, 1719, 2428
BsuI GTATCC 1 cut(s) 577
BsuRI GGCC 2 cut(s) 956, 1452
BtgI CCRYGG 2 cut(s) 15, 2354
BtsCI GGATG 6 cut(s) 88, 998, 1483, 1519, 2215, 2364
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 7 cut(s) 39, 256, 302, 1346, 1398, 1874, 1951
BveI ACCTGC 1 cut(s) 1013
Cac8I GCNNGC 6 cut(s) 525, 834, 851, 1558, 2511, 2605
CaiI CAGNNNCTG 2 cut(s) 2542, 2743
CciI TCATGA 2 cut(s) 982, 1128
CfoI GCGC 6 cut(s) 64, 80, 891, 1229, 2596, 2660
Cfr13I GGNCC 2 cut(s) 955, 2214
CsiI ACCWGGT 2 cut(s) 123, 2541
Csp6I GTAC 3 cut(s) 620, 1169, 1462
CviQI GTAC 3 cut(s) 620, 1169, 1462
DdeI CTNAG 9 cut(s) 170, 570, 1918, 1990, 2085, 2091, 2173, 2298, 2349
DraI TTTAAA 1 cut(s) 1144
DrdI GACNNNNNNGTC 1 cut(s) 1597
DseDI GACNNNNNNGTC 1 cut(s) 1597
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Ecl136II GAGCTC 2 cut(s) 496, 832
Eco130I CCWWGG 3 cut(s) 15, 2354, 2571
Eco147I AGGCCT 1 cut(s) 1452
Eco24I GRGCYC 2 cut(s) 498, 834
Eco31I GGTCTC 2 cut(s) 292, 328
Eco32I GATATC 1 cut(s) 1044
Eco47I GGWCC 1 cut(s) 2214
Eco47III AGCGCT 1 cut(s) 890
Eco53kI GAGCTC 2 cut(s) 496, 832
Eco57I CTGAAG 6 cut(s) 714, 869, 1596, 1688, 2079, 2519
Eco88I CYCGRG 1 cut(s) 1978
EcoICRI GAGCTC 2 cut(s) 496, 832
EcoRII CCWGG 4 cut(s) 123, 1791, 2287, 2541
EcoRV GATATC 1 cut(s) 1044
EcoT14I CCWWGG 3 cut(s) 15, 2354, 2571
EcoT22I ATGCAT 3 cut(s) 408, 1139, 1689
EcoT38I GRGCYC 2 cut(s) 498, 834
ErhI CCWWGG 3 cut(s) 15, 2354, 2571
Esp3I CGTCTC 1 cut(s) 114
FaqI GGGAC 2 cut(s) 161, 255
FauI CCCGC 2 cut(s) 174, 1029
FauNDI CATATG 1 cut(s) 1509
FbaI TGATCA 1 cut(s) 1336
FblI GTMKAC 1 cut(s) 2020
Fnu4HI GCNGC 7 cut(s) 192, 311, 1208, 1848, 1935, 2412, 2577
FokI GGATG 6 cut(s) 75, 1005, 1490, 1526, 2222, 2371
FriOI GRGCYC 2 cut(s) 498, 834
Fsp4HI GCNGC 7 cut(s) 192, 311, 1208, 1848, 1935, 2412, 2577
FspBI CTAG 5 cut(s) 875, 1172, 1250, 2144, 2462
GlaI GCGC 6 cut(s) 63, 79, 890, 1228, 2595, 2659
GluI GCNGC 7 cut(s) 192, 311, 1208, 1848, 1935, 2412, 2577
GsuI CTGGAG 2 cut(s) 232, 1300
HaeII RGCGCY 2 cut(s) 892, 2597
HaeIII GGCC 2 cut(s) 956, 1452
HapII CCGG 2 cut(s) 320, 484
HhaI GCGC 6 cut(s) 64, 80, 891, 1229, 2596, 2660
Hin6I GCGC 6 cut(s) 62, 78, 889, 1227, 2594, 2658
HinP1I GCGC 6 cut(s) 62, 78, 889, 1227, 2594, 2658
HincII GTYRAC 1 cut(s) 1074
HindII GTYRAC 1 cut(s) 1074
HindIII AAGCTT 5 cut(s) 255, 572, 1613, 2456, 2601
HinfI GANTC 6 cut(s) 243, 262, 1313, 1328, 1835, 2171
HpaII CCGG 2 cut(s) 320, 484
HphI GGTGA 2 cut(s) 1051, 1621
Hpy166II GTNNAC 6 cut(s) 1074, 1417, 1489, 1697, 1975, 2021
Hpy8I GTNNAC 6 cut(s) 1074, 1417, 1489, 1697, 1975, 2021
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 8 cut(s) 86, 230, 334, 881, 941, 1402, 1773, 2478
HpyCH4IV ACGT 4 cut(s) 817, 1644, 1753, 1852
HpyF10VI GCNNNNNNNGC 7 cut(s) 689, 850, 859, 2000, 2126, 2359, 2600
HpyF3I CTNAG 9 cut(s) 170, 570, 1918, 1990, 2085, 2091, 2173, 2298, 2349
HpySE526I ACGT 4 cut(s) 817, 1644, 1753, 1852
HspAI GCGC 6 cut(s) 62, 78, 889, 1227, 2594, 2658
Ksp22I TGATCA 1 cut(s) 1336
LmnI GCTCC 5 cut(s) 106, 755, 829, 1177, 1204
Lsp1109I GCAGC 6 cut(s) 203, 322, 1194, 1859, 1946, 2563
MabI ACCWGGT 2 cut(s) 123, 2541
MaeI CTAG 5 cut(s) 875, 1172, 1250, 2144, 2462
MaeII ACGT 4 cut(s) 817, 1644, 1753, 1852
MaeIII GTNAC 8 cut(s) 300, 486, 538, 717, 1356, 2062, 2308, 2739
MbiI CCGCTC 2 cut(s) 101, 169
MflI RGATCY 6 cut(s) 424, 919, 1190, 1671, 1719, 2428
MhlI GDGCHC 4 cut(s) 498, 834, 1400, 2696
MlyI GAGTC 3 cut(s) 237, 1307, 2165
MmeI TCCRAC 2 cut(s) 33, 1878
Mph1103I ATGCAT 3 cut(s) 408, 1139, 1689
MroXI GAANNNNTTC 1 cut(s) 1059
MseI TTAA 8 cut(s) 294, 1011, 1143, 1682, 1959, 1998, 2099, 2501
MslI CAYNNNNRTG 5 cut(s) 528, 981, 1512, 1806, 2157
MspA1I CMGCKG 1 cut(s) 313
MspCI CTTAAG 1 cut(s) 1958
MspI CCGG 2 cut(s) 320, 484
MspR9I CCNGG 5 cut(s) 125, 484, 1793, 2289, 2543
Mva1269I GAATGC 1 cut(s) 1931
MvaI CCWGG 4 cut(s) 125, 1793, 2289, 2543
MvnI CGCG 2 cut(s) 62, 78
MwoI GCNNNNNNNGC 7 cut(s) 689, 850, 859, 2000, 2126, 2359, 2600
NciI CCSGG 1 cut(s) 484
NcoI CCATGG 2 cut(s) 15, 2354
NdeI CATATG 1 cut(s) 1509
NlaIV GGNNCC 6 cut(s) 703, 1110, 1220, 2215, 2286, 2695
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 3 cut(s) 300, 538, 2062
NsiI ATGCAT 3 cut(s) 408, 1139, 1689
NspI RCATGY 2 cut(s) 527, 1560
PaeI GCATGC 2 cut(s) 527, 1560
PaeR7I CTCGAG 1 cut(s) 1978
PagI TCATGA 2 cut(s) 982, 1128
PceI AGGCCT 1 cut(s) 1452
PctI GAATGC 1 cut(s) 1931
PdmI GAANNNNTTC 1 cut(s) 1059
PfeI GAWTC 3 cut(s) 262, 1328, 1835
PkrI GCNGC 7 cut(s) 193, 312, 1209, 1849, 1936, 2413, 2578
PleI GAGTC 3 cut(s) 237, 1307, 2165
PpsI GAGTC 3 cut(s) 237, 1307, 2165
Ppu21I YACGTR 2 cut(s) 818, 1754
Psp124BI GAGCTC 2 cut(s) 498, 834
Psp6I CCWGG 4 cut(s) 123, 1791, 2287, 2541
PspGI CCWGG 4 cut(s) 123, 1791, 2287, 2541
PspN4I GGNNCC 6 cut(s) 703, 1110, 1220, 2215, 2286, 2695
PspPI GGNCC 2 cut(s) 955, 2214
PspXI VCTCGAGB 1 cut(s) 1978
PstI CTGCAG 1 cut(s) 2122
PstNI CAGNNNCTG 2 cut(s) 2542, 2743
PsuI RGATCY 6 cut(s) 424, 919, 1190, 1671, 1719, 2428
RsaI GTAC 3 cut(s) 621, 1170, 1463
RsaNI GTAC 3 cut(s) 620, 1169, 1462
RseI CAYNNNNRTG 5 cut(s) 528, 981, 1512, 1806, 2157
SacI GAGCTC 2 cut(s) 498, 834
SaqAI TTAA 8 cut(s) 294, 1011, 1143, 1682, 1959, 1998, 2099, 2501
SatI GCNGC 7 cut(s) 192, 311, 1208, 1848, 1935, 2412, 2577
Sau96I GGNCC 2 cut(s) 955, 2214
ScaI AGTACT 1 cut(s) 1463
SchI GAGTC 3 cut(s) 237, 1307, 2165
ScrFI CCNGG 5 cut(s) 125, 484, 1793, 2289, 2543
SduI GDGCHC 4 cut(s) 498, 834, 1400, 2696
SexAI ACCWGGT 2 cut(s) 123, 2541
SfcI CTRYAG 2 cut(s) 201, 2118
Sfr274I CTCGAG 1 cut(s) 1978
SinI GGWCC 1 cut(s) 2214
SlaI CTCGAG 1 cut(s) 1978
SmiMI CAYNNNNRTG 5 cut(s) 528, 981, 1512, 1806, 2157
SmlI CTYRAG 4 cut(s) 1282, 1958, 1978, 2111
SmoI CTYRAG 4 cut(s) 1282, 1958, 1978, 2111
SpeI ACTAGT 1 cut(s) 1171
SphI GCATGC 2 cut(s) 527, 1560
SseBI AGGCCT 1 cut(s) 1452
SsiI CCGC 5 cut(s) 99, 167, 313, 1036, 2411
SspMI CTAG 5 cut(s) 875, 1172, 1250, 2144, 2462
SstI GAGCTC 2 cut(s) 498, 834
StuI AGGCCT 1 cut(s) 1452
StyD4I CCNGG 5 cut(s) 123, 482, 1791, 2287, 2541
StyI CCWWGG 3 cut(s) 15, 2354, 2571
TaaI ACNGT 8 cut(s) 86, 230, 334, 881, 941, 1402, 1773, 2478
TaiI ACGT 4 cut(s) 820, 1647, 1756, 1855
TaqI TCGA 5 cut(s) 70, 260, 868, 1979, 2717
TatI WGTACW 3 cut(s) 619, 1168, 1461
TauI GCSGC 1 cut(s) 2414
TfiI GAWTC 3 cut(s) 262, 1328, 1835
Tru1I TTAA 8 cut(s) 294, 1011, 1143, 1682, 1959, 1998, 2099, 2501
Tru9I TTAA 8 cut(s) 294, 1011, 1143, 1682, 1959, 1998, 2099, 2501
TscAI CASTG 7 cut(s) 46, 256, 309, 1346, 1405, 1881, 1958
TseFI GTSAC 3 cut(s) 300, 538, 2062
TseI GCWGC 6 cut(s) 191, 310, 1207, 1847, 1934, 2576
Tsp45I GTSAC 3 cut(s) 300, 538, 2062
TspDTI ATGAA 8 cut(s) 721, 1145, 1232, 1461, 1596, 1824, 2481, 2617
TspGWI ACGGA 2 cut(s) 644, 2747
TspRI CASTG 7 cut(s) 46, 256, 309, 1346, 1405, 1881, 1958
Vha464I CTTAAG 1 cut(s) 1958
VpaK11BI GGWCC 1 cut(s) 2214
XapI RAATTY 7 cut(s) 434, 1023, 1785, 1812, 2193, 2344, 2726
XbaI TCTAGA 1 cut(s) 874
XceI RCATGY 2 cut(s) 527, 1560
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XhoI CTCGAG 1 cut(s) 1978
XmiI GTMKAC 1 cut(s) 2020
XmnI GAANNNNTTC 1 cut(s) 1059
XspI CTAG 5 cut(s) 875, 1172, 1250, 2144, 2462
ZrmI AGTACT 1 cut(s) 1463
Zsp2I ATGCAT 3 cut(s) 408, 1139, 1689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.