Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001579.1

Orthogroup ID

OG0007890

Physical Location & Seq

Genomic Coordinates Reverse (-)

30124 .. 43564

Gene Structure 13441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001579.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2877 bp

atggtccaattttcgaagaaaacgacatccagtctaaaccgtaaagccgagcgtcgcagttccgtcttcccgagaggaaatacaagcggggacagacggacggtcctatcgatgctctccagctccatggagttcaggcctcgcaattacactgccgagaaacaagcccacgcgcttcctcgatcacgcgccgacgatcatcctctctccgctccattgtctctacctcaccccgaggttgaggttgttgatgatggggacaccgactatcttgacccgctcagaaggtcagataacaatgcagcagtttctatagaggatttggaaggcattgaagacagttctgcttcgggactctccagtgaagcttcgattcaaaatccatcaaaagaatgggtctcttttaagaggtcactgatgcagcggtttccggtctccaaaaccgttttgacttcttcaatgtccgatgtgatagtgaaaggcaggaaaacatttgacaaatcttcaacaaatatgcatttggaggaactggaagatccagaaaaatttgcagaagagggcggcaaagtcatcacaggacaggaatatgtttcccggttacacgagctcaaagctgaaataaatcacacttggcatgctgatgatcgtgtgacatctttgaaattatcaataaaagtagctaagcttttgatggatacatctattttacaatgttatcctacactttttgttcttgctacggatattatggatatgcttggggatatggtgtgggaacgcatcaagttgaaagctgaattagctgaagatggaaccaaactctgcttgttaccagagaacttcatggcgagtgatatttgctccgatgccaaagaaacttgcaataattggttcagcaaaattggtgcaatccgagagcttcttccacgtatttatttggagctcgcattattgccttgctggcgtttcttgcatgatcgacctctagactgtcttcagcgcttggtaatgatgacaagagggttagcagatccattggcatctgcctactgtcgcttgtatatggcccattgttttagaaagttacactctcatgatataggatgtctgctcaccggcgttcatgacttcaaaattttgttgatgcgggtgatatcggcaaaggaaacatttcacagaaacttgactgaaaacaaaagattgcttatcagtctaatggaaccaaccattgattatatcatgaaatgcatatttaaaaatgtgtccgaggtaaatgatgtactagtggagcttgggcttggatctaatcaagtggagctgcgtggaaggttcccatgcgcctcaattatccttcatcatctagtcaagcaacttccctcgcaagtagttagctcaagtgctatggagatcattcagctcattgagtccagcaatgatgattcctatgatcagtgcttgaattacaggttacttggatttaggctgtgtgaaagaaaatctgaaatgggcactgtcaatgctgtggtggacaaaatcattcaggttattactcaatatgaaggccttgatgagtacttgaaggttgtggatgcttatgtggacattttccttcaaaatcatatggatgaccacctgaactccattttggaaggtatttcaaaccgagcatgcagtcaagggattgctgaagatgaactgacgaccttgcagtctatcttggtgaagcttctttcttattatgaggatttacaagacgtaattgctatgaccccttttctgaagatcttggatttaatgcatggaagttcacaaagcatcgtcaatatgcagatccttgacatggggataaggaatggttatatacgtgatcggacaactatacagtttctttttgaaatttcccaggctctacatgatgatgaaatttttgtgaatgtaaaagatgattctaaccaagcagcacgtttgatttcttcttttgtctcactggttgattatggggcagagttggaaagtcatttgaccttcttagttgaatgccgtgcagcttttggtagcatacactggcttaaggaaacacttgttcactcgagtaattgtttagcaattaaggctctgaaagatgggagtagacatatcagttttatcaaatcctgcatagcattttctgaagtcacattaccttctatttcagctcagactaagcagttaaatctgtatcttgagactgcagaggtagccttacttggtggtctagtttcacattcagatggactgattgactcagcaatcaactctttgcaaatttcagaagtgatggatgggtccagaacaccaattgatgctgatggaatactctcctcaattcaaaagttattcagcctcttggttatggttccaggtaatcctgagcatggagttactttctatccaaagaacttggtatcgcttgtaaattctcagccatggatgccaccaagaatgagagtgaagattttttgtgcagttgtttctctgttagcggcactatctcaacgagatctgccttatcatgcagataagggaaagcttctaggaaacgacatactgttctttggtcattcatcgtatttaagtgagcttgtcttgatgtgcaagtttgttcttcaaaacatggttgatactattcaacaagaaccttccaaggctgctcgtggaagtatggcgcttgaagcttgcaactgcattgcatcatctttcattccaagtcaggaaatatcctcaatttgcgccaatctaatagaaactgggaagtcgtgtatgggcaccagccacccgtatctgctatcgacaatcaaatttacggatcagttactgcttccttctattgcagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps35

Protein Analysis

958

Amino Acids

107.17

Weight (kDa)

5.61

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50730 AT1G50730 AT1G50730
fragaria_vesca	FvH4_3g23170
malus_domestica	MD03G1197400.v1.1
prunus_persica	Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1
pyrus_communis	pycom03g14870
rosa_chinensis	RchiOBHm_Chr5g0040821
rosa_laevigata	RLG00000034005
rosa_multiflora	Rmu_sc0001579.1_g000005
rosa_roxburghii	Rroxscaffold_1G00039880
rosa_rugosa	Rorug05G0187900
rosa_samantha	Rh5AG273300 Rh5BG278500 Rh5CG310500 Rh5DG286400
rosa_wichuraiana	Rw5G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1708
AccB1I	GGYRCC	1 cut(s)	2804
AccBSI	CCGCTC	2 cut(s)	212, 280
AccI	GTMKAC	1 cut(s)	2131
AccII	CGCG	2 cut(s)	173, 189
AciI	CCGC	7 cut(s)	87, 210, 278, 424, 561, 1147, 2522
AclWI	GGATC	5 cut(s)	530, 1025, 1309, 1825, 2853
AcsI	RAATTY	7 cut(s)	545, 1134, 1896, 1923, 2304, 2455, 2837
AcuI	CTGAAG	5 cut(s)	825, 980, 1707, 1799, 2190
AfaI	GTAC	2 cut(s)	1281, 1574
AfeI	AGCGCT	1 cut(s)	1001
AfiI	CCNNNNNNNGG	2 cut(s)	1840, 2414
AflII	CTTAAG	1 cut(s)	2069
AhdI	GACNNNNNGTC	2 cut(s)	30, 101
AhlI	ACTAGT	1 cut(s)	1282
AjnI	CCWGG	2 cut(s)	1902, 2398
AjuI	GAANNNNNNNTTGG	2 cut(s)	1628, 1660
Alw21I	GWGCWC	2 cut(s)	609, 945
Alw26I	GTCTC	5 cut(s)	225, 403, 439, 1987, 2219
AlwI	GGATC	5 cut(s)	530, 1025, 1309, 1825, 2853
AlwNI	CAGNNNCTG	1 cut(s)	2854
Ama87I	CYCGRG	3 cut(s)	70, 233, 2089
Aor51HI	AGCGCT	1 cut(s)	1001
AoxI	GGCC	3 cut(s)	137, 1065, 1561
ApeKI	GCWGC	6 cut(s)	302, 421, 1318, 1958, 2045, 2687
ApoI	RAATTY	7 cut(s)	545, 1134, 1896, 1923, 2304, 2455, 2837
Asp700I	GAANNNNTTC	1 cut(s)	1170
AspLEI	GCGC	6 cut(s)	175, 191, 1002, 1340, 2707, 2771
AspS9I	GGNCC	4 cut(s)	4, 103, 1066, 2325
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	4 cut(s)	221, 1105, 1162, 1732
AsuII	TTCGAA	1 cut(s)	14
AvaI	CYCGRG	3 cut(s)	70, 233, 2089
AvaII	GGWCC	3 cut(s)	4, 103, 2325
BaeGI	GKGCMC	2 cut(s)	1511, 2807
BanI	GGYRCC	1 cut(s)	2804
BanII	GRGCYC	2 cut(s)	609, 945
BarI	GAAGNNNNNNTAC	2 cut(s)	2163, 2195
BauI	CACGAG	2 cut(s)	602, 2691
BbsI	GAAGAC	3 cut(s)	58, 342, 986
Bbv12I	GWGCWC	2 cut(s)	609, 945
BbvI	GCAGC	6 cut(s)	314, 433, 1305, 1970, 2057, 2674
BccI	CCATC	9 cut(s)	248, 391, 685, 803, 2117, 2264, 2311, 2315, 2342
BceAI	ACGGC	1 cut(s)	2025
BciT130I	CCWGG	2 cut(s)	1904, 2400
BciVI	GTATCC	1 cut(s)	688
BclI	TGATCA	1 cut(s)	1447
BcnI	CCSGG	1 cut(s)	595
BcoDI	GTCTC	5 cut(s)	225, 403, 439, 1987, 2219
BcuI	ACTAGT	1 cut(s)	1282
BfaI	CTAG	5 cut(s)	986, 1283, 1361, 2255, 2573
BfmI	CTRYAG	2 cut(s)	312, 2229
BfoI	RGCGCY	2 cut(s)	1003, 2708
BfrI	CTTAAG	1 cut(s)	2069
BfuI	GTATCC	1 cut(s)	688
BglI	GCCNNNNNGGC	1 cut(s)	961
BglII	AGATCT	2 cut(s)	1782, 2539
BisI	GCNGC	8 cut(s)	303, 422, 562, 1319, 1959, 2046, 2523, 2688
BlpI	GCTNAGC	1 cut(s)	681
BlsI	GCNGC	8 cut(s)	304, 423, 563, 1320, 1960, 2047, 2524, 2689
BmcAI	AGTACT	1 cut(s)	1574
Bme1390I	CCNGG	3 cut(s)	595, 1904, 2400
Bme18I	GGWCC	3 cut(s)	4, 103, 2325
BmeRI	GACNNNNNGTC	2 cut(s)	30, 101
BmeT110I	CYCGRG	3 cut(s)	70, 233, 2089
BmgT120I	GGNCC	4 cut(s)	4, 103, 1066, 2325
BmiI	GGNNCC	6 cut(s)	814, 1221, 1331, 2326, 2397, 2806
BmrFI	CCNGG	3 cut(s)	595, 1904, 2400
BmrI	ACTGGG	1 cut(s)	2796
BmuI	ACTGGG	1 cut(s)	2796
BpiI	GAAGAC	3 cut(s)	58, 342, 986
BpmI	CTGGAG	2 cut(s)	103, 343
Bpu10I	CCTNAGC	1 cut(s)	2409
Bpu1102I	GCTNAGC	1 cut(s)	681
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	1378, 2243
BpuMI	CCSGG	1 cut(s)	595
Bsa29I	ATCGAT	1 cut(s)	110
BsaAI	YACGTR	2 cut(s)	929, 1865
BsaI	GGTCTC	2 cut(s)	403, 439
BsaJI	CCNNGG	6 cut(s)	126, 234, 1266, 1902, 2465, 2682
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	1622, 1652
Bsc4I	CCNNNNNNNGG	2 cut(s)	1840, 2414
Bse118I	RCCGGY	1 cut(s)	1115
Bse1I	ACTGG	6 cut(s)	30, 360, 534, 1992, 2069, 2791
Bse3DI	GCAATG	2 cut(s)	1438, 2724
BseBI	CCWGG	2 cut(s)	1904, 2400
BseCI	ATCGAT	1 cut(s)	110
BseDI	CCNNGG	6 cut(s)	126, 234, 1266, 1902, 2465, 2682
BseGI	GGATG	7 cut(s)	26, 199, 1109, 1594, 1630, 2326, 2475
BseLI	CCNNNNNNNGG	2 cut(s)	1840, 2414
BseMI	GCAATG	2 cut(s)	1438, 2724
BseMII	CTCAG	5 cut(s)	295, 2210, 2298, 2400, 2474
BseNI	ACTGG	6 cut(s)	30, 360, 534, 1992, 2069, 2791
BseRI	GAGGAG	1 cut(s)	2350
BseSI	GKGCMC	2 cut(s)	1511, 2807
BseXI	GCAGC	6 cut(s)	314, 433, 1305, 1970, 2057, 2674
BsgI	GTGCAG	2 cut(s)	2064, 2523
Bsh1236I	CGCG	2 cut(s)	173, 189
BshFI	GGCC	3 cut(s)	139, 1067, 1563
BshNI	GGYRCC	1 cut(s)	2804
BshVI	ATCGAT	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	609, 945
BsiHKCI	CYCGRG	3 cut(s)	70, 233, 2089
BsiSI	CCGG	3 cut(s)	431, 595, 1116
BslFI	GGGAC	3 cut(s)	104, 272, 366
BslI	CCNNNNNNNGG	2 cut(s)	1840, 2414
BsmAI	GTCTC	5 cut(s)	225, 403, 439, 1987, 2219
BsmFI	GGGAC	3 cut(s)	104, 272, 366
BsmI	GAATGC	1 cut(s)	2042
BsnI	GGCC	3 cut(s)	139, 1067, 1563
Bso31I	GGTCTC	2 cut(s)	403, 439
BsoBI	CYCGRG	3 cut(s)	70, 233, 2089
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	4 cut(s)	609, 945, 1511, 2807
Bsp1720I	GCTNAGC	1 cut(s)	681
Bsp19I	CCATGG	2 cut(s)	126, 2465
BspACI	CCGC	7 cut(s)	87, 210, 278, 424, 561, 1147, 2522
BspANI	GGCC	3 cut(s)	139, 1067, 1563
BspCNI	CTCAG	5 cut(s)	294, 2209, 2297, 2401, 2473
BspDI	ATCGAT	1 cut(s)	110
BspFNI	CGCG	2 cut(s)	173, 189
BspHI	TCATGA	3 cut(s)	1093, 1123, 1239
BspLI	GGNNCC	6 cut(s)	814, 1221, 1331, 2326, 2397, 2806
BspMAI	CTGCAG	1 cut(s)	2233
BspPI	GGATC	5 cut(s)	530, 1025, 1309, 1825, 2853
BspT104I	TTCGAA	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	2804
BspTI	CTTAAG	1 cut(s)	2069
BspTNI	GGTCTC	2 cut(s)	403, 439
BsrBI	CCGCTC	2 cut(s)	212, 280
BsrDI	GCAATG	2 cut(s)	1438, 2724
BsrFI	RCCGGY	1 cut(s)	1115
BsrI	ACTGG	6 cut(s)	30, 360, 534, 1992, 2069, 2791
BssAI	RCCGGY	1 cut(s)	1115
BssECI	CCNNGG	6 cut(s)	126, 234, 1266, 1902, 2465, 2682
BssSI	CACGAG	2 cut(s)	602, 2691
BssT1I	CCWWGG	3 cut(s)	126, 2465, 2682
Bst2BI	CACGAG	2 cut(s)	602, 2691
Bst2UI	CCWGG	2 cut(s)	1904, 2400
Bst4CI	ACNGT	9 cut(s)	41, 103, 341, 445, 992, 1052, 1513, 1884, 2589
Bst6I	CTCTTC	1 cut(s)	549
BstAFI	CTTAAG	1 cut(s)	2069
BstBAI	YACGTR	2 cut(s)	929, 1865
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	5 cut(s)	636, 945, 962, 1669, 2716
BstDEI	CTNAG	8 cut(s)	281, 681, 2029, 2196, 2202, 2284, 2409, 2460
BstDSI	CCRYGG	2 cut(s)	126, 2465
BstF5I	GGATG	7 cut(s)	26, 199, 1109, 1594, 1630, 2326, 2475
BstFNI	CGCG	2 cut(s)	173, 189
BstH2I	RGCGCY	2 cut(s)	1003, 2708
BstHHI	GCGC	6 cut(s)	175, 191, 1002, 1340, 2707, 2771
BstMAI	GTCTC	5 cut(s)	225, 403, 439, 1987, 2219
BstMWI	GCNNNNNNNGC	7 cut(s)	800, 961, 970, 2111, 2237, 2470, 2711
BstNI	CCWGG	2 cut(s)	1904, 2400
BstNSI	RCATGY	2 cut(s)	638, 1671
BstSCI	CCNGG	3 cut(s)	593, 1902, 2398
BstSFI	CTRYAG	2 cut(s)	312, 2229
BstSLI	GKGCMC	2 cut(s)	1511, 2807
BstUI	CGCG	2 cut(s)	173, 189
BstV1I	GCAGC	6 cut(s)	314, 433, 1305, 1970, 2057, 2674
BstV2I	GAAGAC	3 cut(s)	58, 342, 986
BstX2I	RGATCY	6 cut(s)	535, 1030, 1301, 1782, 1830, 2539
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	6 cut(s)	535, 1030, 1301, 1782, 1830, 2539
Bsu15I	ATCGAT	1 cut(s)	110
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	139, 1067, 1563
BsuTUI	ATCGAT	1 cut(s)	110
BtgI	CCRYGG	2 cut(s)	126, 2465
BtsCI	GGATG	7 cut(s)	26, 199, 1109, 1594, 1630, 2326, 2475
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	7 cut(s)	150, 367, 413, 1457, 1509, 1985, 2062
Cac8I	GCNNGC	5 cut(s)	636, 945, 962, 1669, 2716
CaiI	CAGNNNCTG	1 cut(s)	2854
CciI	TCATGA	3 cut(s)	1093, 1123, 1239
CfoI	GCGC	6 cut(s)	175, 191, 1002, 1340, 2707, 2771
Cfr10I	RCCGGY	1 cut(s)	1115
Cfr13I	GGNCC	4 cut(s)	4, 103, 1066, 2325
ClaI	ATCGAT	1 cut(s)	110
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	1280, 1573
CviQI	GTAC	2 cut(s)	1280, 1573
DdeI	CTNAG	8 cut(s)	281, 681, 2029, 2196, 2202, 2284, 2409, 2460
DraI	TTTAAA	1 cut(s)	1255
DrdI	GACNNNNNNGTC	1 cut(s)	1708
DriI	GACNNNNNGTC	2 cut(s)	30, 101
DseDI	GACNNNNNNGTC	1 cut(s)	1708
Eam1104I	CTCTTC	1 cut(s)	549
Eam1105I	GACNNNNNGTC	2 cut(s)	30, 101
EarI	CTCTTC	1 cut(s)	549
Ecl136II	GAGCTC	2 cut(s)	607, 943
Eco130I	CCWWGG	3 cut(s)	126, 2465, 2682
Eco147I	AGGCCT	2 cut(s)	139, 1563
Eco24I	GRGCYC	2 cut(s)	609, 945
Eco31I	GGTCTC	2 cut(s)	403, 439
Eco32I	GATATC	1 cut(s)	1155
Eco47I	GGWCC	3 cut(s)	4, 103, 2325
Eco47III	AGCGCT	1 cut(s)	1001
Eco53kI	GAGCTC	2 cut(s)	607, 943
Eco57I	CTGAAG	5 cut(s)	825, 980, 1707, 1799, 2190
Eco88I	CYCGRG	3 cut(s)	70, 233, 2089
EcoICRI	GAGCTC	2 cut(s)	607, 943
EcoRII	CCWGG	2 cut(s)	1902, 2398
EcoRV	GATATC	1 cut(s)	1155
EcoT14I	CCWWGG	3 cut(s)	126, 2465, 2682
EcoT22I	ATGCAT	3 cut(s)	519, 1250, 1800
EcoT38I	GRGCYC	2 cut(s)	609, 945
ErhI	CCWWGG	3 cut(s)	126, 2465, 2682
FaqI	GGGAC	3 cut(s)	104, 272, 366
FauI	CCCGC	3 cut(s)	80, 285, 1140
FauNDI	CATATG	1 cut(s)	1620
FbaI	TGATCA	1 cut(s)	1447
FblI	GTMKAC	1 cut(s)	2131
Fnu4HI	GCNGC	8 cut(s)	303, 422, 562, 1319, 1959, 2046, 2523, 2688
FokI	GGATG	7 cut(s)	13, 186, 1116, 1601, 1637, 2333, 2482
FriOI	GRGCYC	2 cut(s)	609, 945
Fsp4HI	GCNGC	8 cut(s)	303, 422, 562, 1319, 1959, 2046, 2523, 2688
FspBI	CTAG	5 cut(s)	986, 1283, 1361, 2255, 2573
GlaI	GCGC	6 cut(s)	174, 190, 1001, 1339, 2706, 2770
GluI	GCNGC	8 cut(s)	303, 422, 562, 1319, 1959, 2046, 2523, 2688
GsuI	CTGGAG	2 cut(s)	103, 343
HaeII	RGCGCY	2 cut(s)	1003, 2708
HaeIII	GGCC	3 cut(s)	139, 1067, 1563
HapII	CCGG	3 cut(s)	431, 595, 1116
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	6 cut(s)	175, 191, 1002, 1340, 2707, 2771
Hin6I	GCGC	6 cut(s)	173, 189, 1000, 1338, 2705, 2769
HinP1I	GCGC	6 cut(s)	173, 189, 1000, 1338, 2705, 2769
HindIII	AAGCTT	5 cut(s)	366, 683, 1724, 2567, 2712
HinfI	GANTC	6 cut(s)	354, 373, 1424, 1439, 1946, 2282
HpaII	CCGG	3 cut(s)	431, 595, 1116
HphI	GGTGA	4 cut(s)	221, 1105, 1162, 1732
Hpy166II	GTNNAC	5 cut(s)	1528, 1600, 1808, 2086, 2132
Hpy8I	GTNNAC	5 cut(s)	1528, 1600, 1808, 2086, 2132
Hpy99I	CGWCG	2 cut(s)	57, 197
HpyCH4III	ACNGT	9 cut(s)	41, 103, 341, 445, 992, 1052, 1513, 1884, 2589
HpyCH4IV	ACGT	4 cut(s)	928, 1755, 1864, 1963
HpyF10VI	GCNNNNNNNGC	7 cut(s)	800, 961, 970, 2111, 2237, 2470, 2711
HpyF3I	CTNAG	8 cut(s)	281, 681, 2029, 2196, 2202, 2284, 2409, 2460
HpySE526I	ACGT	4 cut(s)	928, 1755, 1864, 1963
HspAI	GCGC	6 cut(s)	173, 189, 1000, 1338, 2705, 2769
Ksp22I	TGATCA	1 cut(s)	1447
LmnI	GCTCC	6 cut(s)	128, 217, 866, 940, 1288, 1315
Lsp1109I	GCAGC	6 cut(s)	314, 433, 1305, 1970, 2057, 2674
MaeI	CTAG	5 cut(s)	986, 1283, 1361, 2255, 2573
MaeII	ACGT	4 cut(s)	928, 1755, 1864, 1963
MaeIII	GTNAC	9 cut(s)	411, 597, 649, 828, 1083, 1467, 2173, 2419, 2850
MbiI	CCGCTC	2 cut(s)	212, 280
MfeI	CAATTG	1 cut(s)	2337
MflI	RGATCY	6 cut(s)	535, 1030, 1301, 1782, 1830, 2539
MhlI	GDGCHC	4 cut(s)	609, 945, 1511, 2807
MlyI	GAGTC	3 cut(s)	348, 1433, 2276
MmeI	TCCRAC	1 cut(s)	1989
Mph1103I	ATGCAT	3 cut(s)	519, 1250, 1800
MroXI	GAANNNNTTC	1 cut(s)	1170
MseI	TTAA	7 cut(s)	405, 1254, 1793, 2070, 2109, 2210, 2612
MslI	CAYNNNNRTG	5 cut(s)	639, 1092, 1623, 1917, 2268
MspA1I	CMGCKG	1 cut(s)	424
MspCI	CTTAAG	1 cut(s)	2069
MspI	CCGG	3 cut(s)	431, 595, 1116
MspR9I	CCNGG	3 cut(s)	595, 1904, 2400
MunI	CAATTG	1 cut(s)	2337
Mva1269I	GAATGC	1 cut(s)	2042
MvaI	CCWGG	2 cut(s)	1904, 2400
MvnI	CGCG	2 cut(s)	173, 189
MwoI	GCNNNNNNNGC	7 cut(s)	800, 961, 970, 2111, 2237, 2470, 2711
NciI	CCSGG	1 cut(s)	595
NcoI	CCATGG	2 cut(s)	126, 2465
NdeI	CATATG	1 cut(s)	1620
NlaIV	GGNNCC	6 cut(s)	814, 1221, 1331, 2326, 2397, 2806
NmeAIII	GCCGAG	2 cut(s)	73, 181
NmuCI	GTSAC	3 cut(s)	411, 649, 2173
NsiI	ATGCAT	3 cut(s)	519, 1250, 1800
NspI	RCATGY	2 cut(s)	638, 1671
NspV	TTCGAA	1 cut(s)	14
PaeI	GCATGC	2 cut(s)	638, 1671
PaeR7I	CTCGAG	1 cut(s)	2089
PagI	TCATGA	3 cut(s)	1093, 1123, 1239
PceI	AGGCCT	2 cut(s)	139, 1563
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 107
PctI	GAATGC	1 cut(s)	2042
PdmI	GAANNNNTTC	1 cut(s)	1170
PfeI	GAWTC	3 cut(s)	373, 1439, 1946
PkrI	GCNGC	8 cut(s)	304, 423, 563, 1320, 1960, 2047, 2524, 2689
PleI	GAGTC	3 cut(s)	348, 1432, 2276
PpsI	GAGTC	3 cut(s)	348, 1432, 2276
Ppu21I	YACGTR	2 cut(s)	929, 1865
Psp124BI	GAGCTC	2 cut(s)	609, 945
Psp6I	CCWGG	2 cut(s)	1902, 2398
PspGI	CCWGG	2 cut(s)	1902, 2398
PspN4I	GGNNCC	6 cut(s)	814, 1221, 1331, 2326, 2397, 2806
PspPI	GGNCC	4 cut(s)	4, 103, 1066, 2325
PspXI	VCTCGAGB	1 cut(s)	2089
PstI	CTGCAG	1 cut(s)	2233
PstNI	CAGNNNCTG	1 cut(s)	2854
PsuI	RGATCY	6 cut(s)	535, 1030, 1301, 1782, 1830, 2539
RsaI	GTAC	2 cut(s)	1281, 1574
RsaNI	GTAC	2 cut(s)	1280, 1573
RseI	CAYNNNNRTG	5 cut(s)	639, 1092, 1623, 1917, 2268
SacI	GAGCTC	2 cut(s)	609, 945
SaqAI	TTAA	7 cut(s)	405, 1254, 1793, 2070, 2109, 2210, 2612
SatI	GCNGC	8 cut(s)	303, 422, 562, 1319, 1959, 2046, 2523, 2688
Sau96I	GGNCC	4 cut(s)	4, 103, 1066, 2325
ScaI	AGTACT	1 cut(s)	1574
SchI	GAGTC	3 cut(s)	348, 1433, 2276
ScrFI	CCNGG	3 cut(s)	595, 1904, 2400
SduI	GDGCHC	4 cut(s)	609, 945, 1511, 2807
SfcI	CTRYAG	2 cut(s)	312, 2229
Sfr274I	CTCGAG	1 cut(s)	2089
SfuI	TTCGAA	1 cut(s)	14
SgrAI	CRCCGGYG	1 cut(s)	1115
SinI	GGWCC	3 cut(s)	4, 103, 2325
SlaI	CTCGAG	1 cut(s)	2089
SmiMI	CAYNNNNRTG	5 cut(s)	639, 1092, 1623, 1917, 2268
SmlI	CTYRAG	4 cut(s)	1393, 2069, 2089, 2222
SmoI	CTYRAG	4 cut(s)	1393, 2069, 2089, 2222
SpeI	ACTAGT	1 cut(s)	1282
SphI	GCATGC	2 cut(s)	638, 1671
SseBI	AGGCCT	2 cut(s)	139, 1563
SsiI	CCGC	7 cut(s)	87, 210, 278, 424, 561, 1147, 2522
SspMI	CTAG	5 cut(s)	986, 1283, 1361, 2255, 2573
SstI	GAGCTC	2 cut(s)	609, 945
StuI	AGGCCT	2 cut(s)	139, 1563
StyD4I	CCNGG	3 cut(s)	593, 1902, 2398
StyI	CCWWGG	3 cut(s)	126, 2465, 2682
TaaI	ACNGT	9 cut(s)	41, 103, 341, 445, 992, 1052, 1513, 1884, 2589
TaiI	ACGT	4 cut(s)	931, 1758, 1867, 1966
TaqI	TCGA	7 cut(s)	14, 110, 181, 371, 979, 2090, 2828
TatI	WGTACW	2 cut(s)	1279, 1572
TauI	GCSGC	2 cut(s)	564, 2525
TfiI	GAWTC	3 cut(s)	373, 1439, 1946
Tru1I	TTAA	7 cut(s)	405, 1254, 1793, 2070, 2109, 2210, 2612
Tru9I	TTAA	7 cut(s)	405, 1254, 1793, 2070, 2109, 2210, 2612
TscAI	CASTG	7 cut(s)	157, 367, 420, 1457, 1516, 1992, 2069
TseFI	GTSAC	3 cut(s)	411, 649, 2173
TseI	GCWGC	6 cut(s)	302, 421, 1318, 1958, 2045, 2687
Tsp45I	GTSAC	3 cut(s)	411, 649, 2173
TspDTI	ATGAA	9 cut(s)	832, 1112, 1256, 1343, 1572, 1707, 1935, 2592, 2728
TspGWI	ACGGA	4 cut(s)	52, 112, 755, 2858
TspRI	CASTG	7 cut(s)	157, 367, 420, 1457, 1516, 1992, 2069
Vha464I	CTTAAG	1 cut(s)	2069
VpaK11BI	GGWCC	3 cut(s)	4, 103, 2325
XapI	RAATTY	7 cut(s)	545, 1134, 1896, 1923, 2304, 2455, 2837
XbaI	TCTAGA	1 cut(s)	985
XceI	RCATGY	2 cut(s)	638, 1671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	390
XhoI	CTCGAG	1 cut(s)	2089
XmiI	GTMKAC	1 cut(s)	2131
XmnI	GAANNNNTTC	1 cut(s)	1170
XspI	CTAG	5 cut(s)	986, 1283, 1361, 2255, 2573
ZrmI	AGTACT	1 cut(s)	1574
Zsp2I	ATGCAT	3 cut(s)	519, 1250, 1800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.