Rh5BG278500

UPF0505 protein C16orf62 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007890
Physical Location & Seq
Reverse (-)
35111619 .. 35123711
12093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG278500.1

Sequence Viewer

Length: 2757 bp
ATGGAGTTCAGGCCTCGCAATTACACTGCCGAGAAACAAGCCCACGCGCTTCCTCGATCACGCGCCGACGATCATCCTCTCTCCGCTCCATTGTCTCTACCTCACCCCGAGGTTGAGGTTGTTGATGATGGGGACACCGACTATCTTGACCCGCTCAGAAGGTCAGATAACAATGCAGCAGTTTCTATAGAGGATTTGGAAGGCATTGAAGACAGTTCTGCTTCGGGACTCTCCAGTGAAGCTTCGATTCAAAATCCATCAAAAGAATGGGTCTCTTTTAAGAGGTCACTGATGCAGCGGTTTCCAGTCTCCAAAACCGTTTTGACTTCTTCAATGTCCGATGTGATAGTGAAAGGCAGGAAAACATTTGACAAATCTTCAACAAATATGCATTTGGAGGAACTGGAAGATCCAGAAAAATTTGCAGAAGAGGGCGGCAAAGTCATCACAGGACAGGAATATGTTTCCCGGTTACACGAGCTCAAAGCTGAAATAAATCACACTTGGCATGCTGATGATCGTGTGACATCTTTGAAATTATCAATAAAAGTAGCTAAGCTTTTGATGGATACATCTATTTTACAATGTTATCCTACACTTTTTGTTCTTGCTACGGATATTATGGATATGCTTGGGGATATGGTGTGGGAACGCATCAAGTTGAAAGCTGAATTAGCTGAAGATGGAACCAAACTCTGCTTGTTACCAGAGAACTTCATGGCGAGTGATATTTGCTCCGATGCCAAAGAAACTTGCAATAATTGGTTCAGCAAAATTGGTGCAATCCGAGAGCTTCTTCCACGTATTTATTTGGAGCTCGCATTATTGCCTTGCTGGCGTTTCTTGCATGATCGACCTCTAGACTGTCTTCAGCGCTTGGTAATGATGACAAGAGGGTTAGCAGATCCATTGGCATCTGCCTACTGTCGCTTGTATATGGCCCATTGTTTTAGAAAGTTGCACTCTCATGATATAGGATGTCTGCTCACCGGCGTTAATGACTTCAAAATTTTGTTGATGCGGGTGATATCGGCAAAGGAAACATTTCACAGAAACTTGACTGAAAACAAAAGATTGCTTATCAGTCTAATGGAACCAACCATTGATTATATCATGAAATGCATATTTAAAAATGTGTCCGAGAGACAGGTAAATGATGTACTAGTGGAGCTTGGGCTTGGATCTAATCAAGTGGAGCTGTGTGGAAGGTTCCCATGCGCCTCAATTATCCTTCATCATCTAGTCAAGCAACTTCCCTCGCAAGTAGTTAGCTCAAGTGCTATGGAGATCATTCAGCTCATTGAGTCCAGCAATGATGATTCCTATGATCAGTGCTTGAATTACAGGTTACTTGGATTTAGGCTGTGTGAAAGAAAATCTGAAATGGGCACTGTCAATGCTGTGGTGGACAAAATCATTCAGGTTATTACTCAATATGAAGGCCTTGATGAGTACTTGAAGGTTGTGGATGCTTATGTGGACATTTTCCTTCAAAATCATATGGATGACCACCTGAACTCCATTTTGGAAGGTATTTCAAACCGAGCATGCAGTCAAGGGATTGCTGAAGATGAACTGACGACCTTGCAGTCTATCTTGGTGAAGCTTCTTTCTTATTATGAGGATTTACAAGACGTAATTGCTATGACCCCTTTTCTGAAGATCTTGGATTTAATGCATGGAAGTTCACAAAGCATCGTCAATATGCAGATCCTTGACATGGGGATAAGGAATGGTTATATACTTGATCGGACAACTATACAGTTTCTTTTTGAAATTTCCCAGGCTCTACATGATGATGAAATTTTTGTGAATGTAAAAGATGATTCTAACCAAGCAGCACGTTTGATTTCTTCTTTTGTCTCACTGGTTGATTATGGGGCAGAGTTGGAAAGTCATTTGACCTTCTTAGTTGAATGCCGTGCAGCTTTTGGTAGCATACACTGGCTTAAGGAAACACTTGTTCACTCGAGTAATTGTTTAGCAATTAAGGCTCTGAAAGATGGGAGTAGACATATCAGTTTTATCAAATCCTGCATAGCATTTTCTGAAGTCACATTACCTTCTATTTCAGCTCAGACTAAGCAGTTAAATCTGTATCTTGAGACTGCAGAGGTAGCCTTACTTGGTGGTCTAGTTTCACATTCAGATGGACTGATTGACTCAGCAATCAACTCTTTGCAAATTTCAGAAGTGATGGATGGGTCCAGAACACCAATTGATGCTGATGGAATACTCTCCTCAATTCAAAAGTTATTCAGCCTCTTGGTTATGGTTCCAGGTAATCCTGAGCATGGAGTTACTTTCTATCCAAAGAACTTGGTATCGCTTGTAAATTCTCAGCCATGGATGCCACCAAGAATGAGAGTGAAGATTTTTTGTGCAGTTGTTTCTCTGTTAGCGGCACTATCTCAACGAGATCTGCCTTATCATGCAGATAAGGGAAAGCTTCTAGGAAACGACGTACTGTTCTTTGGTCATTCATCGTATTTAAGTGAGCTTGTCTTGATGTGCAAGTTTGTTCTTCAGAACATGGTTGATACTATTCAACAAGAACCTTCCAAGGCTGCTCGTGGAAGTATGGCGCTTGAAGCTTGCAACTGCATTGCATCATCTTTCATTCCAAGTCAGGAAATATCCTCAATTTGCGCCAATCTAATAGAAACTGGAAAGTCGTGTATGGGCACCAGCCACCCGTATCTGCTATCGACAATCAAATTTACGGATCAGTTACTGCTTCCTTCTATTGCAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps35

Protein Analysis

918

Amino Acids

102.64

Weight (kDa)

5.29

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps35 PF03635 424 - 715 7.1e-07 Vacuolar protein sorting-associated protein 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1588
AccB1I GGYRCC 1 cut(s) 2684
AccBSI CCGCTC 2 cut(s) 86, 154
AccI GTMKAC 1 cut(s) 2011
AccII CGCG 2 cut(s) 47, 63
AciI CCGC 6 cut(s) 84, 152, 298, 435, 1021, 2402
AclWI GGATC 5 cut(s) 404, 899, 1189, 1705, 2733
AcsI RAATTY 7 cut(s) 419, 1008, 1776, 1803, 2184, 2335, 2717
AcuI CTGAAG 6 cut(s) 699, 854, 1587, 1679, 2070, 2510
AfaI GTAC 3 cut(s) 1161, 1454, 2466
AfeI AGCGCT 1 cut(s) 875
AfiI CCNNNNNNNGG 2 cut(s) 1720, 2294
AflII CTTAAG 1 cut(s) 1949
AhlI ACTAGT 1 cut(s) 1162
AjnI CCWGG 2 cut(s) 1782, 2278
AjuI GAANNNNNNNTTGG 2 cut(s) 1508, 1540
Alw21I GWGCWC 2 cut(s) 483, 819
Alw26I GTCTC 6 cut(s) 99, 277, 313, 1138, 1867, 2099
AlwI GGATC 5 cut(s) 404, 899, 1189, 1705, 2733
AlwNI CAGNNNCTG 1 cut(s) 2734
Ama87I CYCGRG 2 cut(s) 107, 1969
Aor51HI AGCGCT 1 cut(s) 875
AoxI GGCC 3 cut(s) 11, 939, 1441
ApeKI GCWGC 5 cut(s) 176, 295, 1838, 1925, 2567
ApoI RAATTY 7 cut(s) 419, 1008, 1776, 1803, 2184, 2335, 2717
Asp700I GAANNNNTTC 1 cut(s) 1044
AspLEI GCGC 6 cut(s) 49, 65, 876, 1220, 2587, 2651
AspS9I GGNCC 2 cut(s) 940, 2205
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 4 cut(s) 95, 979, 1036, 1612
AvaI CYCGRG 2 cut(s) 107, 1969
AvaII GGWCC 1 cut(s) 2205
BaeGI GKGCMC 2 cut(s) 1391, 2687
BanI GGYRCC 1 cut(s) 2684
BanII GRGCYC 2 cut(s) 483, 819
BarI GAAGNNNNNNTAC 2 cut(s) 2043, 2075
BauI CACGAG 2 cut(s) 476, 2571
BbsI GAAGAC 2 cut(s) 216, 860
Bbv12I GWGCWC 2 cut(s) 483, 819
BbvI GCAGC 5 cut(s) 188, 307, 1850, 1937, 2554
BccI CCATC 9 cut(s) 122, 265, 559, 677, 1997, 2144, 2191, 2195, 2222
BceAI ACGGC 1 cut(s) 1905
BciT130I CCWGG 2 cut(s) 1784, 2280
BciVI GTATCC 1 cut(s) 562
BclI TGATCA 1 cut(s) 1327
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 6 cut(s) 99, 277, 313, 1138, 1867, 2099
BcuI ACTAGT 1 cut(s) 1162
BfaI CTAG 5 cut(s) 860, 1163, 1241, 2135, 2453
BfmI CTRYAG 2 cut(s) 186, 2109
BfoI RGCGCY 2 cut(s) 877, 2588
BfrI CTTAAG 1 cut(s) 1949
BfuI GTATCC 1 cut(s) 562
BglI GCCNNNNNGGC 1 cut(s) 835
BglII AGATCT 2 cut(s) 1662, 2419
BisI GCNGC 7 cut(s) 177, 296, 436, 1839, 1926, 2403, 2568
BlpI GCTNAGC 1 cut(s) 555
BlsI GCNGC 7 cut(s) 178, 297, 437, 1840, 1927, 2404, 2569
BmcAI AGTACT 1 cut(s) 1454
Bme1390I CCNGG 3 cut(s) 469, 1784, 2280
Bme18I GGWCC 1 cut(s) 2205
BmeT110I CYCGRG 2 cut(s) 107, 1969
BmgT120I GGNCC 2 cut(s) 940, 2205
BmiI GGNNCC 6 cut(s) 688, 1095, 1211, 2206, 2277, 2686
BmrFI CCNGG 3 cut(s) 469, 1784, 2280
BpiI GAAGAC 2 cut(s) 216, 860
BpmI CTGGAG 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 2289
Bpu1102I GCTNAGC 1 cut(s) 555
BpuEI CTTGAG 2 cut(s) 1258, 2123
BpuMI CCSGG 1 cut(s) 469
BsaAI YACGTR 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 4 cut(s) 108, 1782, 2345, 2562
BsaXI ACNNNNNCTCC 2 cut(s) 1502, 1532
Bsc4I CCNNNNNNNGG 2 cut(s) 1720, 2294
Bse118I RCCGGY 1 cut(s) 989
Bse1I ACTGG 6 cut(s) 234, 305, 408, 1872, 1949, 2671
Bse3DI GCAATG 2 cut(s) 1318, 2604
BseBI CCWGG 2 cut(s) 1784, 2280
BseDI CCNNGG 4 cut(s) 108, 1782, 2345, 2562
BseGI GGATG 6 cut(s) 73, 983, 1474, 1510, 2206, 2355
BseLI CCNNNNNNNGG 2 cut(s) 1720, 2294
BseMI GCAATG 2 cut(s) 1318, 2604
BseMII CTCAG 5 cut(s) 169, 2090, 2178, 2280, 2354
BseNI ACTGG 6 cut(s) 234, 305, 408, 1872, 1949, 2671
BseRI GAGGAG 1 cut(s) 2230
BseSI GKGCMC 2 cut(s) 1391, 2687
BseXI GCAGC 5 cut(s) 188, 307, 1850, 1937, 2554
BsgI GTGCAG 2 cut(s) 1944, 2403
Bsh1236I CGCG 2 cut(s) 47, 63
BshFI GGCC 3 cut(s) 13, 941, 1443
BshNI GGYRCC 1 cut(s) 2684
BsiHKAI GWGCWC 2 cut(s) 483, 819
BsiHKCI CYCGRG 2 cut(s) 107, 1969
BsiSI CCGG 2 cut(s) 469, 990
BslFI GGGAC 2 cut(s) 146, 240
BslI CCNNNNNNNGG 2 cut(s) 1720, 2294
BsmAI GTCTC 6 cut(s) 99, 277, 313, 1138, 1867, 2099
BsmFI GGGAC 2 cut(s) 146, 240
BsmI GAATGC 1 cut(s) 1922
BsnI GGCC 3 cut(s) 13, 941, 1443
Bso31I GGTCTC 1 cut(s) 277
BsoBI CYCGRG 2 cut(s) 107, 1969
Bsp1286I GDGCHC 4 cut(s) 483, 819, 1391, 2687
Bsp1720I GCTNAGC 1 cut(s) 555
Bsp19I CCATGG 1 cut(s) 2345
BspACI CCGC 6 cut(s) 84, 152, 298, 435, 1021, 2402
BspANI GGCC 3 cut(s) 13, 941, 1443
BspCNI CTCAG 5 cut(s) 168, 2089, 2177, 2281, 2353
BspFNI CGCG 2 cut(s) 47, 63
BspHI TCATGA 2 cut(s) 967, 1113
BspLI GGNNCC 6 cut(s) 688, 1095, 1211, 2206, 2277, 2686
BspMAI CTGCAG 1 cut(s) 2113
BspPI GGATC 5 cut(s) 404, 899, 1189, 1705, 2733
BspT107I GGYRCC 1 cut(s) 2684
BspTI CTTAAG 1 cut(s) 1949
BspTNI GGTCTC 1 cut(s) 277
BsrBI CCGCTC 2 cut(s) 86, 154
BsrDI GCAATG 2 cut(s) 1318, 2604
BsrFI RCCGGY 1 cut(s) 989
BsrI ACTGG 6 cut(s) 234, 305, 408, 1872, 1949, 2671
BssAI RCCGGY 1 cut(s) 989
BssECI CCNNGG 4 cut(s) 108, 1782, 2345, 2562
BssSI CACGAG 2 cut(s) 476, 2571
BssT1I CCWWGG 2 cut(s) 2345, 2562
Bst2BI CACGAG 2 cut(s) 476, 2571
Bst2UI CCWGG 2 cut(s) 1784, 2280
Bst4CI ACNGT 7 cut(s) 215, 319, 866, 926, 1393, 1764, 2469
Bst6I CTCTTC 1 cut(s) 423
BstAFI CTTAAG 1 cut(s) 1949
BstBAI YACGTR 1 cut(s) 803
BstC8I GCNNGC 5 cut(s) 510, 819, 836, 1549, 2596
BstDEI CTNAG 8 cut(s) 155, 555, 1909, 2076, 2082, 2164, 2289, 2340
BstDSI CCRYGG 1 cut(s) 2345
BstF5I GGATG 6 cut(s) 73, 983, 1474, 1510, 2206, 2355
BstFNI CGCG 2 cut(s) 47, 63
BstH2I RGCGCY 2 cut(s) 877, 2588
BstHHI GCGC 6 cut(s) 49, 65, 876, 1220, 2587, 2651
BstMAI GTCTC 6 cut(s) 99, 277, 313, 1138, 1867, 2099
BstMWI GCNNNNNNNGC 7 cut(s) 674, 835, 844, 1991, 2117, 2350, 2591
BstNI CCWGG 2 cut(s) 1784, 2280
BstNSI RCATGY 2 cut(s) 512, 1551
BstSCI CCNGG 3 cut(s) 467, 1782, 2278
BstSFI CTRYAG 2 cut(s) 186, 2109
BstSLI GKGCMC 2 cut(s) 1391, 2687
BstUI CGCG 2 cut(s) 47, 63
BstV1I GCAGC 5 cut(s) 188, 307, 1850, 1937, 2554
BstV2I GAAGAC 2 cut(s) 216, 860
BstX2I RGATCY 6 cut(s) 409, 904, 1181, 1662, 1710, 2419
BstYI RGATCY 6 cut(s) 409, 904, 1181, 1662, 1710, 2419
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 3 cut(s) 13, 941, 1443
BtgI CCRYGG 1 cut(s) 2345
BtsCI GGATG 6 cut(s) 73, 983, 1474, 1510, 2206, 2355
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 7 cut(s) 24, 241, 287, 1337, 1389, 1865, 1942
Cac8I GCNNGC 5 cut(s) 510, 819, 836, 1549, 2596
CaiI CAGNNNCTG 1 cut(s) 2734
CciI TCATGA 2 cut(s) 967, 1113
CfoI GCGC 6 cut(s) 49, 65, 876, 1220, 2587, 2651
Cfr10I RCCGGY 1 cut(s) 989
Cfr13I GGNCC 2 cut(s) 940, 2205
Csp6I GTAC 3 cut(s) 1160, 1453, 2465
CviQI GTAC 3 cut(s) 1160, 1453, 2465
DdeI CTNAG 8 cut(s) 155, 555, 1909, 2076, 2082, 2164, 2289, 2340
DraI TTTAAA 1 cut(s) 1129
DrdI GACNNNNNNGTC 1 cut(s) 1588
DseDI GACNNNNNNGTC 1 cut(s) 1588
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Ecl136II GAGCTC 2 cut(s) 481, 817
Eco130I CCWWGG 2 cut(s) 2345, 2562
Eco147I AGGCCT 2 cut(s) 13, 1443
Eco24I GRGCYC 2 cut(s) 483, 819
Eco31I GGTCTC 1 cut(s) 277
Eco32I GATATC 1 cut(s) 1029
Eco47I GGWCC 1 cut(s) 2205
Eco47III AGCGCT 1 cut(s) 875
Eco53kI GAGCTC 2 cut(s) 481, 817
Eco57I CTGAAG 6 cut(s) 699, 854, 1587, 1679, 2070, 2510
Eco88I CYCGRG 2 cut(s) 107, 1969
EcoICRI GAGCTC 2 cut(s) 481, 817
EcoRII CCWGG 2 cut(s) 1782, 2278
EcoRV GATATC 1 cut(s) 1029
EcoT14I CCWWGG 2 cut(s) 2345, 2562
EcoT22I ATGCAT 3 cut(s) 393, 1124, 1680
EcoT38I GRGCYC 2 cut(s) 483, 819
ErhI CCWWGG 2 cut(s) 2345, 2562
FaqI GGGAC 2 cut(s) 146, 240
FauI CCCGC 2 cut(s) 159, 1014
FauNDI CATATG 1 cut(s) 1500
FbaI TGATCA 1 cut(s) 1327
FblI GTMKAC 1 cut(s) 2011
Fnu4HI GCNGC 7 cut(s) 177, 296, 436, 1839, 1926, 2403, 2568
FokI GGATG 6 cut(s) 60, 990, 1481, 1517, 2213, 2362
FriOI GRGCYC 2 cut(s) 483, 819
Fsp4HI GCNGC 7 cut(s) 177, 296, 436, 1839, 1926, 2403, 2568
FspBI CTAG 5 cut(s) 860, 1163, 1241, 2135, 2453
GlaI GCGC 6 cut(s) 48, 64, 875, 1219, 2586, 2650
GluI GCNGC 7 cut(s) 177, 296, 436, 1839, 1926, 2403, 2568
GsuI CTGGAG 1 cut(s) 217
HaeII RGCGCY 2 cut(s) 877, 2588
HaeIII GGCC 3 cut(s) 13, 941, 1443
HapII CCGG 2 cut(s) 469, 990
HhaI GCGC 6 cut(s) 49, 65, 876, 1220, 2587, 2651
Hin6I GCGC 6 cut(s) 47, 63, 874, 1218, 2585, 2649
HinP1I GCGC 6 cut(s) 47, 63, 874, 1218, 2585, 2649
HindIII AAGCTT 5 cut(s) 240, 557, 1604, 2447, 2592
HinfI GANTC 6 cut(s) 228, 247, 1304, 1319, 1826, 2162
HpaII CCGG 2 cut(s) 469, 990
HphI GGTGA 4 cut(s) 95, 979, 1036, 1612
Hpy166II GTNNAC 5 cut(s) 1408, 1480, 1688, 1966, 2012
Hpy8I GTNNAC 5 cut(s) 1408, 1480, 1688, 1966, 2012
Hpy99I CGWCG 2 cut(s) 71, 2465
HpyCH4III ACNGT 7 cut(s) 215, 319, 866, 926, 1393, 1764, 2469
HpyCH4IV ACGT 4 cut(s) 802, 1635, 1843, 2463
HpyF10VI GCNNNNNNNGC 7 cut(s) 674, 835, 844, 1991, 2117, 2350, 2591
HpyF3I CTNAG 8 cut(s) 155, 555, 1909, 2076, 2082, 2164, 2289, 2340
HpySE526I ACGT 4 cut(s) 802, 1635, 1843, 2463
HspAI GCGC 6 cut(s) 47, 63, 874, 1218, 2585, 2649
Ksp22I TGATCA 1 cut(s) 1327
LmnI GCTCC 5 cut(s) 91, 740, 814, 1168, 1195
Lsp1109I GCAGC 5 cut(s) 188, 307, 1850, 1937, 2554
MaeI CTAG 5 cut(s) 860, 1163, 1241, 2135, 2453
MaeII ACGT 4 cut(s) 802, 1635, 1843, 2463
MaeIII GTNAC 8 cut(s) 285, 471, 523, 702, 1347, 2053, 2299, 2730
MbiI CCGCTC 2 cut(s) 86, 154
MfeI CAATTG 1 cut(s) 2217
MflI RGATCY 6 cut(s) 409, 904, 1181, 1662, 1710, 2419
MhlI GDGCHC 4 cut(s) 483, 819, 1391, 2687
MlyI GAGTC 3 cut(s) 222, 1313, 2156
MmeI TCCRAC 1 cut(s) 1869
Mph1103I ATGCAT 3 cut(s) 393, 1124, 1680
MroXI GAANNNNTTC 1 cut(s) 1044
MseI TTAA 8 cut(s) 279, 996, 1128, 1673, 1950, 1989, 2090, 2492
MslI CAYNNNNRTG 5 cut(s) 513, 966, 1503, 1797, 2148
MspA1I CMGCKG 1 cut(s) 298
MspCI CTTAAG 1 cut(s) 1949
MspI CCGG 2 cut(s) 469, 990
MspR9I CCNGG 3 cut(s) 469, 1784, 2280
MunI CAATTG 1 cut(s) 2217
Mva1269I GAATGC 1 cut(s) 1922
MvaI CCWGG 2 cut(s) 1784, 2280
MvnI CGCG 2 cut(s) 47, 63
MwoI GCNNNNNNNGC 7 cut(s) 674, 835, 844, 1991, 2117, 2350, 2591
NciI CCSGG 1 cut(s) 469
NcoI CCATGG 1 cut(s) 2345
NdeI CATATG 1 cut(s) 1500
NlaIV GGNNCC 6 cut(s) 688, 1095, 1211, 2206, 2277, 2686
NmeAIII GCCGAG 1 cut(s) 55
NmuCI GTSAC 3 cut(s) 285, 523, 2053
NsiI ATGCAT 3 cut(s) 393, 1124, 1680
NspI RCATGY 2 cut(s) 512, 1551
PaeI GCATGC 2 cut(s) 512, 1551
PaeR7I CTCGAG 1 cut(s) 1969
PagI TCATGA 2 cut(s) 967, 1113
PceI AGGCCT 2 cut(s) 13, 1443
PctI GAATGC 1 cut(s) 1922
PdmI GAANNNNTTC 1 cut(s) 1044
PfeI GAWTC 3 cut(s) 247, 1319, 1826
PkrI GCNGC 7 cut(s) 178, 297, 437, 1840, 1927, 2404, 2569
PleI GAGTC 3 cut(s) 222, 1312, 2156
PpsI GAGTC 3 cut(s) 222, 1312, 2156
Ppu21I YACGTR 1 cut(s) 803
Psp124BI GAGCTC 2 cut(s) 483, 819
Psp6I CCWGG 2 cut(s) 1782, 2278
PspGI CCWGG 2 cut(s) 1782, 2278
PspN4I GGNNCC 6 cut(s) 688, 1095, 1211, 2206, 2277, 2686
PspPI GGNCC 2 cut(s) 940, 2205
PspXI VCTCGAGB 1 cut(s) 1969
PstI CTGCAG 1 cut(s) 2113
PstNI CAGNNNCTG 1 cut(s) 2734
PsuI RGATCY 6 cut(s) 409, 904, 1181, 1662, 1710, 2419
RsaI GTAC 3 cut(s) 1161, 1454, 2466
RsaNI GTAC 3 cut(s) 1160, 1453, 2465
RseI CAYNNNNRTG 5 cut(s) 513, 966, 1503, 1797, 2148
SacI GAGCTC 2 cut(s) 483, 819
SaqAI TTAA 8 cut(s) 279, 996, 1128, 1673, 1950, 1989, 2090, 2492
SatI GCNGC 7 cut(s) 177, 296, 436, 1839, 1926, 2403, 2568
Sau96I GGNCC 2 cut(s) 940, 2205
ScaI AGTACT 1 cut(s) 1454
SchI GAGTC 3 cut(s) 222, 1313, 2156
ScrFI CCNGG 3 cut(s) 469, 1784, 2280
SduI GDGCHC 4 cut(s) 483, 819, 1391, 2687
SfcI CTRYAG 2 cut(s) 186, 2109
Sfr274I CTCGAG 1 cut(s) 1969
SgrAI CRCCGGYG 1 cut(s) 989
SinI GGWCC 1 cut(s) 2205
SlaI CTCGAG 1 cut(s) 1969
SmiMI CAYNNNNRTG 5 cut(s) 513, 966, 1503, 1797, 2148
SmlI CTYRAG 4 cut(s) 1273, 1949, 1969, 2102
SmoI CTYRAG 4 cut(s) 1273, 1949, 1969, 2102
SpeI ACTAGT 1 cut(s) 1162
SphI GCATGC 2 cut(s) 512, 1551
SseBI AGGCCT 2 cut(s) 13, 1443
SsiI CCGC 6 cut(s) 84, 152, 298, 435, 1021, 2402
SspMI CTAG 5 cut(s) 860, 1163, 1241, 2135, 2453
SstI GAGCTC 2 cut(s) 483, 819
StuI AGGCCT 2 cut(s) 13, 1443
StyD4I CCNGG 3 cut(s) 467, 1782, 2278
StyI CCWWGG 2 cut(s) 2345, 2562
TaaI ACNGT 7 cut(s) 215, 319, 866, 926, 1393, 1764, 2469
TaiI ACGT 4 cut(s) 805, 1638, 1846, 2466
TaqI TCGA 5 cut(s) 55, 245, 853, 1970, 2708
TatI WGTACW 2 cut(s) 1159, 1452
TauI GCSGC 2 cut(s) 438, 2405
TfiI GAWTC 3 cut(s) 247, 1319, 1826
Tru1I TTAA 8 cut(s) 279, 996, 1128, 1673, 1950, 1989, 2090, 2492
Tru9I TTAA 8 cut(s) 279, 996, 1128, 1673, 1950, 1989, 2090, 2492
TscAI CASTG 7 cut(s) 31, 241, 294, 1337, 1396, 1872, 1949
TseFI GTSAC 3 cut(s) 285, 523, 2053
TseI GCWGC 5 cut(s) 176, 295, 1838, 1925, 2567
Tsp45I GTSAC 3 cut(s) 285, 523, 2053
TspDTI ATGAA 8 cut(s) 706, 1130, 1223, 1452, 1587, 1815, 2472, 2608
TspGWI ACGGA 2 cut(s) 629, 2738
TspRI CASTG 7 cut(s) 31, 241, 294, 1337, 1396, 1872, 1949
Vha464I CTTAAG 1 cut(s) 1949
VpaK11BI GGWCC 1 cut(s) 2205
XapI RAATTY 7 cut(s) 419, 1008, 1776, 1803, 2184, 2335, 2717
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 2 cut(s) 512, 1551
XcmI CCANNNNNNNNNTGG 1 cut(s) 264
XhoI CTCGAG 1 cut(s) 1969
XmiI GTMKAC 1 cut(s) 2011
XmnI GAANNNNTTC 1 cut(s) 1044
XspI CTAG 5 cut(s) 860, 1163, 1241, 2135, 2453
ZrmI AGTACT 1 cut(s) 1454
Zsp2I ATGCAT 3 cut(s) 393, 1124, 1680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.