Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007890

Physical Location & Seq

Genomic Coordinates Reverse (-)

34271758 .. 34283869

Gene Structure 12112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG310500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGGAGTTCAGACCTCGCAATTACACTGCCGAGAAACAAGCCCACGCGCTTCCTCGATCACGCGCCGACGGTCATCCTCTCTCCGCTTCATCGTCTCCACCTCGCCACCAGGTTGAGGTTGTTGATGATGGGGACACCGACTATCTTGACCCGCTCAGAAGGTCAGATAACAATGCAGCAGTTTCTATAGAGGATTTGGAAGGCATTGAAGACAGTTCTGCTTCGGGACTCTCCAGTGAAGCTTCGATTCAAAATCCATCAAAAGAATGGGTCTCTTTTAAGAGGTCACTGATGCAGCGGTTTCCGGTCTCCAAAACCGTTTTGACTTCTTCAATGTCCGATGTGATAGTGAAAGGCAGGAAAACATATGACAAATCTTCAACAAATATGCATTTGGAGGAACTGGAAGATCCAGAAAAATTTGCAGAAGAGGGTGGCAAAGTCATCACAGGACAGGAATATGTTTCCCGGTTACACGAGCTCAAAGCTGAAATAAATCACACTTGGCATGCTGATGATCGTGTGACATCTTTGAAATTATCAATAAAAGTAGCTAAGCTTTTGATGGATACATCTATTTTACAATGTTATCCTACACTTTTTGTTCTTGCTACGGATATTATGGATATGCTTGGGGATATGGTGTGGGAACGCATCAAGTTGAAAGCTGAATTAGCTGAAGATGGAACCAAACTCTGCTTGTTACCAGAGAACTTCATGGTGAGTGATATTTGCTCCGATGCCAAAGAAACTTGCAATAATTGGTTCAGCAAAATTGGTGCAATCCGAGAGCTTCTTCCACGTATTTATTTGGAGCTCGCATTATTGCCTTGCTGGCGTTTCTTGCATGATCGACCTCTAGACTGTCTTCAGCGCTTGGTAATGATGACAAGAGGGTTAGCAGATCCATTGGCATCTGCCTACTGTCGCTTGTATATGGCCCATTGTTTTAGAAAGTTGCACTCTCATGATATAGGATGTCTGCTCACCTGCGTTAATGACTTCAAAATTTTGTTGATGCGGGTGATATCGGCAAAGGAAACATTTCACAGAAACTTGACTGAAAACAAAAGATTGCTTATCAGTCTAATGGAACCAACCATTGATTATATCATGAAATGCATATTTAAAAATGTGTCCGAGAGACAAGTAAATGATGTACTAGTGGAGCTTGGGCTTGGATCTAATCAAGTGGAGCTGCGTGGAAGGTTCCCATGCGCCTCAATTATCCTTCATCATCTAGTCAAGCAACTTCCATCGCAAGTAGTTAGCTCAAGTGCTATGGAGATCATTCGGCTCATTGAGTCCAGCAATGATGATTCCTATGATCAGTGCTTGAATTACAGGTTACTTGGATTTAGGCTGTGTGAAAGAAAATCTGAAATGGGCACTGTCAATGCTGTGGTGGACAAAGTCATTCAGGTTATTACTCAATATGAAGGCCTTGATGAGTACTTGAAGGTTGTGGATGCTTATGTGGACATTTTCCTTCAAAATCATATGGTTGATTATGGGGCAGAGTTGGAAAGTCATTTGACCTTCTTAGTTGAATGCCGTGCAGCTTTTGGTAGCATACACTGGCTTAAGGAAACTCTTGTTCGCTCGAGTAATTGTTTAGCAATTAAGGCTCTGAAAGATGGGAATAGACATATCAGTTTTATCAAATCCTGCGTAGCATTTTCTGAAGTCACATTACCTTCTATTTCAGCTCAGACTAAGCAGTTAAATCTGTATCTTGAGACTGCAGAGGTAGCCTTACTTGGTGGTCTAGTTTCTCATTCAGATGGACTGATTGACTCAGCAATCAACTCTATGCAAATTTCAGAAGCGATGGATGGGTCCAGAACACCAATTGATGCTGATGGAATACTCTCCTCAATTCAAAAGTTATTCAGCCTCTTGGTTATGGTTCCAGGTAATCCTGAGCATGGAGTTACTTTCTATCCAAAGAACTTGGTATCGCTTGTAAATTCTCAGCCATGGATGACACCAAGAATGAGAGTGAAGATTTTTTGTGCGGTTGTTTCTCTGTTAGCGGCACTATCTCAACGAGATCTGCCTTATCATGCAGATAAGGGAAAGCTTCTAGGAAACGACATACTGTTCTTTGGTCATTCATCGTATTTAAGTGAGCTTGCCTTGATGTGCAAGTTTGTTCTTCAGAACCTGGTTGATACTATTCAACAAGAACCTTCCAAGGCTGCTCGTGGAAGTATGGCGCTTGAAGCTTGCAACTGCATTGCATCATCTTTCATTCCAAGTCAGGAAATATCCTCAATTTGCTCCAATCTAATAGAAACTGGGAAGTCGTGTATGGACACCAGCCACCCGTATCTGCTATCGACGATCAAATTTATGGATCACTTGCTGCTTCCATCCGTTGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps35

Protein Analysis

796

Amino Acids

89.15

Weight (kDa)

5.82

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50730 AT1G50730 AT1G50730
fragaria_vesca	FvH4_3g23170
malus_domestica	MD03G1197400.v1.1
prunus_persica	Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1 Prupe.4G218100_v2.0.a1
pyrus_communis	pycom03g14870
rosa_chinensis	RchiOBHm_Chr5g0040821
rosa_laevigata	RLG00000034005
rosa_multiflora	Rmu_sc0001579.1_g000005
rosa_roxburghii	Rroxscaffold_1G00039880
rosa_rugosa	Rorug05G0187900
rosa_samantha	Rh5AG273300 Rh5BG278500 Rh5CG310500 Rh5DG286400
rosa_wichuraiana	Rw5G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	998
Acc36I	ACCTGC	1 cut(s)	998
AccBSI	CCGCTC	1 cut(s)	154
AccII	CGCG	2 cut(s)	47, 63
AciI	CCGC	6 cut(s)	84, 152, 298, 1021, 2018, 2036
AclWI	GGATC	4 cut(s)	404, 899, 1189, 2367
AcsI	RAATTY	5 cut(s)	419, 1008, 1818, 1969, 2351
AcuI	CTGAAG	4 cut(s)	699, 854, 1704, 2144
AfaI	GTAC	2 cut(s)	1161, 1454
AfeI	AGCGCT	1 cut(s)	875
AfiI	CCNNNNNNNGG	2 cut(s)	115, 1928
AflII	CTTAAG	1 cut(s)	1583
AhlI	ACTAGT	1 cut(s)	1162
AjnI	CCWGG	3 cut(s)	108, 1912, 2166
Alw21I	GWGCWC	2 cut(s)	483, 819
Alw26I	GTCTC	5 cut(s)	99, 277, 313, 1138, 1733
AlwI	GGATC	4 cut(s)	404, 899, 1189, 2367
AlwNI	CAGNNNCTG	1 cut(s)	2167
Ama87I	CYCGRG	1 cut(s)	1603
Aor51HI	AGCGCT	1 cut(s)	875
AoxI	GGCC	2 cut(s)	939, 1441
ApeKI	GCWGC	6 cut(s)	176, 295, 1198, 1559, 2201, 2368
ApoI	RAATTY	5 cut(s)	419, 1008, 1818, 1969, 2351
Asp700I	GAANNNNTTC	1 cut(s)	1044
AspLEI	GCGC	5 cut(s)	49, 65, 876, 1220, 2221
AspS9I	GGNCC	2 cut(s)	940, 1839
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	3 cut(s)	733, 979, 1036
AvaI	CYCGRG	1 cut(s)	1603
AvaII	GGWCC	1 cut(s)	1839
BaeGI	GKGCMC	1 cut(s)	1391
BanII	GRGCYC	2 cut(s)	483, 819
BarI	GAAGNNNNNNTAC	2 cut(s)	1677, 1709
BauI	CACGAG	2 cut(s)	476, 2205
BbsI	GAAGAC	2 cut(s)	216, 860
Bbv12I	GWGCWC	2 cut(s)	483, 819
BbvI	GCAGC	6 cut(s)	188, 307, 1185, 1571, 2188, 2355
BceAI	ACGGC	1 cut(s)	1539
BciT130I	CCWGG	3 cut(s)	110, 1914, 2168
BciVI	GTATCC	1 cut(s)	562
BclI	TGATCA	1 cut(s)	1327
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	5 cut(s)	99, 277, 313, 1138, 1733
BcuI	ACTAGT	1 cut(s)	1162
BfaI	CTAG	5 cut(s)	860, 1163, 1241, 1769, 2087
BfmI	CTRYAG	2 cut(s)	186, 1743
BfoI	RGCGCY	2 cut(s)	877, 2222
BfrI	CTTAAG	1 cut(s)	1583
BfuAI	ACCTGC	1 cut(s)	998
BfuI	GTATCC	1 cut(s)	562
BglI	GCCNNNNNGGC	1 cut(s)	835
BglII	AGATCT	1 cut(s)	2053
BisI	GCNGC	7 cut(s)	177, 296, 1199, 1560, 2037, 2202, 2369
BlpI	GCTNAGC	1 cut(s)	555
BlsI	GCNGC	7 cut(s)	178, 297, 1200, 1561, 2038, 2203, 2370
BmcAI	AGTACT	1 cut(s)	1454
Bme1390I	CCNGG	4 cut(s)	110, 469, 1914, 2168
Bme18I	GGWCC	1 cut(s)	1839
BmeT110I	CYCGRG	1 cut(s)	1603
BmgT120I	GGNCC	2 cut(s)	940, 1839
BmiI	GGNNCC	5 cut(s)	688, 1095, 1211, 1840, 1911
BmrFI	CCNGG	4 cut(s)	110, 469, 1914, 2168
BmrI	ACTGGG	1 cut(s)	2310
BmsI	GCATC	8 cut(s)	282, 663, 730, 923, 1008, 1459, 1846, 2252
BmuI	ACTGGG	1 cut(s)	2310
BpiI	GAAGAC	2 cut(s)	216, 860
BpmI	CTGGAG	1 cut(s)	217
Bpu10I	CCTNAGC	1 cut(s)	1923
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	1258, 1757
BpuMI	CCSGG	1 cut(s)	469
BsaAI	YACGTR	1 cut(s)	803
BsaI	GGTCTC	2 cut(s)	277, 313
BsaJI	CCNNGG	2 cut(s)	1979, 2196
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 1928
Bse1I	ACTGG	4 cut(s)	234, 408, 1583, 2305
Bse3DI	GCAATG	2 cut(s)	1318, 2238
BseBI	CCWGG	3 cut(s)	110, 1914, 2168
BseDI	CCNNGG	2 cut(s)	1979, 2196
BseGI	GGATG	6 cut(s)	73, 983, 1474, 1840, 1989, 2375
BseLI	CCNNNNNNNGG	2 cut(s)	115, 1928
BseMI	GCAATG	2 cut(s)	1318, 2238
BseMII	CTCAG	5 cut(s)	169, 1724, 1812, 1914, 1988
BseNI	ACTGG	4 cut(s)	234, 408, 1583, 2305
BseRI	GAGGAG	1 cut(s)	1864
BseSI	GKGCMC	1 cut(s)	1391
BseXI	GCAGC	6 cut(s)	188, 307, 1185, 1571, 2188, 2355
BsgI	GTGCAG	1 cut(s)	1578
Bsh1236I	CGCG	2 cut(s)	47, 63
BshFI	GGCC	2 cut(s)	941, 1443
BsiHKAI	GWGCWC	2 cut(s)	483, 819
BsiHKCI	CYCGRG	1 cut(s)	1603
BsiSI	CCGG	2 cut(s)	305, 469
BslFI	GGGAC	2 cut(s)	146, 240
BslI	CCNNNNNNNGG	2 cut(s)	115, 1928
BsmAI	GTCTC	5 cut(s)	99, 277, 313, 1138, 1733
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	146, 240
BsmI	GAATGC	1 cut(s)	1556
BsnI	GGCC	2 cut(s)	941, 1443
Bso31I	GGTCTC	2 cut(s)	277, 313
BsoBI	CYCGRG	1 cut(s)	1603
Bsp1286I	GDGCHC	3 cut(s)	483, 819, 1391
Bsp1720I	GCTNAGC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	1979
BspACI	CCGC	6 cut(s)	84, 152, 298, 1021, 2018, 2036
BspANI	GGCC	2 cut(s)	941, 1443
BspCNI	CTCAG	5 cut(s)	168, 1723, 1811, 1915, 1987
BspFNI	CGCG	2 cut(s)	47, 63
BspHI	TCATGA	2 cut(s)	967, 1113
BspLI	GGNNCC	5 cut(s)	688, 1095, 1211, 1840, 1911
BspMAI	CTGCAG	1 cut(s)	1747
BspMI	ACCTGC	1 cut(s)	998
BspPI	GGATC	4 cut(s)	404, 899, 1189, 2367
BspTI	CTTAAG	1 cut(s)	1583
BspTNI	GGTCTC	2 cut(s)	277, 313
BsrBI	CCGCTC	1 cut(s)	154
BsrDI	GCAATG	2 cut(s)	1318, 2238
BsrI	ACTGG	4 cut(s)	234, 408, 1583, 2305
BssECI	CCNNGG	2 cut(s)	1979, 2196
BssSI	CACGAG	2 cut(s)	476, 2205
BssT1I	CCWWGG	2 cut(s)	1979, 2196
Bst2BI	CACGAG	2 cut(s)	476, 2205
Bst2UI	CCWGG	3 cut(s)	110, 1914, 2168
Bst4CI	ACNGT	7 cut(s)	71, 215, 319, 866, 926, 1393, 2103
Bst6I	CTCTTC	1 cut(s)	423
BstAFI	CTTAAG	1 cut(s)	1583
BstBAI	YACGTR	1 cut(s)	803
BstC8I	GCNNGC	5 cut(s)	510, 819, 836, 2136, 2230
BstDEI	CTNAG	8 cut(s)	155, 555, 1543, 1710, 1716, 1798, 1923, 1974
BstDSI	CCRYGG	1 cut(s)	1979
BstF5I	GGATG	6 cut(s)	73, 983, 1474, 1840, 1989, 2375
BstFNI	CGCG	2 cut(s)	47, 63
BstH2I	RGCGCY	2 cut(s)	877, 2222
BstHHI	GCGC	5 cut(s)	49, 65, 876, 1220, 2221
BstMAI	GTCTC	5 cut(s)	99, 277, 313, 1138, 1733
BstMWI	GCNNNNNNNGC	6 cut(s)	674, 835, 844, 1625, 1751, 2225
BstNI	CCWGG	3 cut(s)	110, 1914, 2168
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	4 cut(s)	108, 467, 1912, 2166
BstSFI	CTRYAG	2 cut(s)	186, 1743
BstSLI	GKGCMC	1 cut(s)	1391
BstUI	CGCG	2 cut(s)	47, 63
BstV1I	GCAGC	6 cut(s)	188, 307, 1185, 1571, 2188, 2355
BstV2I	GAAGAC	2 cut(s)	216, 860
BstX2I	RGATCY	4 cut(s)	409, 904, 1181, 2053
BstYI	RGATCY	4 cut(s)	409, 904, 1181, 2053
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	941, 1443
BtgI	CCRYGG	1 cut(s)	1979
BtgZI	GCGATG	2 cut(s)	1242, 1844
BtsCI	GGATG	6 cut(s)	73, 983, 1474, 1840, 1989, 2375
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	6 cut(s)	24, 241, 287, 1337, 1389, 1576
BveI	ACCTGC	1 cut(s)	998
Cac8I	GCNNGC	5 cut(s)	510, 819, 836, 2136, 2230
CaiI	CAGNNNCTG	1 cut(s)	2167
CciI	TCATGA	2 cut(s)	967, 1113
CfoI	GCGC	5 cut(s)	49, 65, 876, 1220, 2221
Cfr13I	GGNCC	2 cut(s)	940, 1839
CsiI	ACCWGGT	2 cut(s)	108, 2166
Csp6I	GTAC	2 cut(s)	1160, 1453
CviAII	CATG	9 cut(s)	509, 718, 848, 968, 1114, 1215, 1928, 1980, 2066
CviQI	GTAC	2 cut(s)	1160, 1453
DdeI	CTNAG	8 cut(s)	155, 555, 1543, 1710, 1716, 1798, 1923, 1974
DraI	TTTAAA	1 cut(s)	1129
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	2 cut(s)	481, 817
Eco130I	CCWWGG	2 cut(s)	1979, 2196
Eco147I	AGGCCT	1 cut(s)	1443
Eco24I	GRGCYC	2 cut(s)	483, 819
Eco31I	GGTCTC	2 cut(s)	277, 313
Eco32I	GATATC	1 cut(s)	1029
Eco47I	GGWCC	1 cut(s)	1839
Eco47III	AGCGCT	1 cut(s)	875
Eco53kI	GAGCTC	2 cut(s)	481, 817
Eco57I	CTGAAG	4 cut(s)	699, 854, 1704, 2144
Eco88I	CYCGRG	1 cut(s)	1603
EcoICRI	GAGCTC	2 cut(s)	481, 817
EcoRII	CCWGG	3 cut(s)	108, 1912, 2166
EcoRV	GATATC	1 cut(s)	1029
EcoT14I	CCWWGG	2 cut(s)	1979, 2196
EcoT22I	ATGCAT	2 cut(s)	393, 1124
EcoT38I	GRGCYC	2 cut(s)	483, 819
ErhI	CCWWGG	2 cut(s)	1979, 2196
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	9 cut(s)	512, 721, 851, 971, 1117, 1218, 1931, 1983, 2069
FaqI	GGGAC	2 cut(s)	146, 240
FatI	CATG	9 cut(s)	508, 717, 847, 967, 1113, 1214, 1927, 1979, 2065
FauI	CCCGC	2 cut(s)	159, 1014
FauNDI	CATATG	2 cut(s)	367, 1500
FbaI	TGATCA	1 cut(s)	1327
Fnu4HI	GCNGC	7 cut(s)	177, 296, 1199, 1560, 2037, 2202, 2369
FokI	GGATG	6 cut(s)	60, 990, 1481, 1847, 1996, 2362
FriOI	GRGCYC	2 cut(s)	483, 819
Fsp4HI	GCNGC	7 cut(s)	177, 296, 1199, 1560, 2037, 2202, 2369
FspBI	CTAG	5 cut(s)	860, 1163, 1241, 1769, 2087
GlaI	GCGC	5 cut(s)	48, 64, 875, 1219, 2220
GluI	GCNGC	7 cut(s)	177, 296, 1199, 1560, 2037, 2202, 2369
GsuI	CTGGAG	1 cut(s)	217
HaeII	RGCGCY	2 cut(s)	877, 2222
HaeIII	GGCC	2 cut(s)	941, 1443
HapII	CCGG	2 cut(s)	305, 469
HhaI	GCGC	5 cut(s)	49, 65, 876, 1220, 2221
Hin1II	CATG	9 cut(s)	512, 721, 851, 971, 1117, 1218, 1931, 1983, 2069
Hin6I	GCGC	5 cut(s)	47, 63, 874, 1218, 2219
HinP1I	GCGC	5 cut(s)	47, 63, 874, 1218, 2219
HindIII	AAGCTT	4 cut(s)	240, 557, 2081, 2226
HinfI	GANTC	5 cut(s)	228, 247, 1304, 1319, 1796
HpaII	CCGG	2 cut(s)	305, 469
HphI	GGTGA	3 cut(s)	733, 979, 1036
Hpy166II	GTNNAC	2 cut(s)	1408, 1480
Hpy8I	GTNNAC	2 cut(s)	1408, 1480
Hpy99I	CGWCG	2 cut(s)	71, 2347
HpyCH4III	ACNGT	7 cut(s)	71, 215, 319, 866, 926, 1393, 2103
HpyCH4IV	ACGT	1 cut(s)	802
HpyF10VI	GCNNNNNNNGC	6 cut(s)	674, 835, 844, 1625, 1751, 2225
HpyF3I	CTNAG	8 cut(s)	155, 555, 1543, 1710, 1716, 1798, 1923, 1974
HpySE526I	ACGT	1 cut(s)	802
Hsp92II	CATG	9 cut(s)	512, 721, 851, 971, 1117, 1218, 1931, 1983, 2069
HspAI	GCGC	5 cut(s)	47, 63, 874, 1218, 2219
Ksp22I	TGATCA	1 cut(s)	1327
LmnI	GCTCC	5 cut(s)	740, 814, 1168, 1195, 2288
Lsp1109I	GCAGC	6 cut(s)	188, 307, 1185, 1571, 2188, 2355
LweI	GCATC	8 cut(s)	282, 663, 730, 923, 1008, 1459, 1846, 2252
MabI	ACCWGGT	2 cut(s)	108, 2166
MaeI	CTAG	5 cut(s)	860, 1163, 1241, 1769, 2087
MaeII	ACGT	1 cut(s)	802
MaeIII	GTNAC	7 cut(s)	285, 471, 523, 702, 1347, 1687, 1933
MbiI	CCGCTC	1 cut(s)	154
MfeI	CAATTG	1 cut(s)	1851
MflI	RGATCY	4 cut(s)	409, 904, 1181, 2053
MhlI	GDGCHC	3 cut(s)	483, 819, 1391
MlyI	GAGTC	3 cut(s)	222, 1313, 1790
MmeI	TCCRAC	1 cut(s)	1503
Mph1103I	ATGCAT	2 cut(s)	393, 1124
MroXI	GAANNNNTTC	1 cut(s)	1044
MseI	TTAA	7 cut(s)	279, 996, 1128, 1584, 1623, 1724, 2126
MslI	CAYNNNNRTG	3 cut(s)	513, 966, 1782
MspA1I	CMGCKG	1 cut(s)	298
MspCI	CTTAAG	1 cut(s)	1583
MspI	CCGG	2 cut(s)	305, 469
MspR9I	CCNGG	4 cut(s)	110, 469, 1914, 2168
MunI	CAATTG	1 cut(s)	1851
Mva1269I	GAATGC	1 cut(s)	1556
MvaI	CCWGG	3 cut(s)	110, 1914, 2168
MvnI	CGCG	2 cut(s)	47, 63
MwoI	GCNNNNNNNGC	6 cut(s)	674, 835, 844, 1625, 1751, 2225
NciI	CCSGG	1 cut(s)	469
NcoI	CCATGG	1 cut(s)	1979
NdeI	CATATG	2 cut(s)	367, 1500
NlaIII	CATG	9 cut(s)	512, 721, 851, 971, 1117, 1218, 1931, 1983, 2069
NlaIV	GGNNCC	5 cut(s)	688, 1095, 1211, 1840, 1911
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	3 cut(s)	285, 523, 1687
NsiI	ATGCAT	2 cut(s)	393, 1124
NspI	RCATGY	1 cut(s)	512
PaeI	GCATGC	1 cut(s)	512
PaeR7I	CTCGAG	1 cut(s)	1603
PagI	TCATGA	2 cut(s)	967, 1113
PaqCI	CACCTGC	1 cut(s)	998
PceI	AGGCCT	1 cut(s)	1443
PctI	GAATGC	1 cut(s)	1556
PdmI	GAANNNNTTC	1 cut(s)	1044
PfeI	GAWTC	2 cut(s)	247, 1319
PflFI	GACNNNGTC	1 cut(s)	1412
PkrI	GCNGC	7 cut(s)	178, 297, 1200, 1561, 2038, 2203, 2370
PleI	GAGTC	3 cut(s)	222, 1312, 1790
PpsI	GAGTC	3 cut(s)	222, 1312, 1790
Ppu21I	YACGTR	1 cut(s)	803
Psp124BI	GAGCTC	2 cut(s)	483, 819
Psp6I	CCWGG	3 cut(s)	108, 1912, 2166
PspGI	CCWGG	3 cut(s)	108, 1912, 2166
PspN4I	GGNNCC	5 cut(s)	688, 1095, 1211, 1840, 1911
PspPI	GGNCC	2 cut(s)	940, 1839
PspXI	VCTCGAGB	1 cut(s)	1603
PstI	CTGCAG	1 cut(s)	1747
PstNI	CAGNNNCTG	1 cut(s)	2167
PsuI	RGATCY	4 cut(s)	409, 904, 1181, 2053
PsyI	GACNNNGTC	1 cut(s)	1412
RsaI	GTAC	2 cut(s)	1161, 1454
RsaNI	GTAC	2 cut(s)	1160, 1453
RseI	CAYNNNNRTG	3 cut(s)	513, 966, 1782
SacI	GAGCTC	2 cut(s)	483, 819
SaqAI	TTAA	7 cut(s)	279, 996, 1128, 1584, 1623, 1724, 2126
SatI	GCNGC	7 cut(s)	177, 296, 1199, 1560, 2037, 2202, 2369
Sau96I	GGNCC	2 cut(s)	940, 1839
ScaI	AGTACT	1 cut(s)	1454
SchI	GAGTC	3 cut(s)	222, 1313, 1790
ScrFI	CCNGG	4 cut(s)	110, 469, 1914, 2168
SduI	GDGCHC	3 cut(s)	483, 819, 1391
SexAI	ACCWGGT	2 cut(s)	108, 2166
SfaNI	GCATC	8 cut(s)	282, 663, 730, 923, 1008, 1459, 1846, 2252
SfcI	CTRYAG	2 cut(s)	186, 1743
Sfr274I	CTCGAG	1 cut(s)	1603
SinI	GGWCC	1 cut(s)	1839
SlaI	CTCGAG	1 cut(s)	1603
SmiMI	CAYNNNNRTG	3 cut(s)	513, 966, 1782
SmlI	CTYRAG	4 cut(s)	1273, 1583, 1603, 1736
SmoI	CTYRAG	4 cut(s)	1273, 1583, 1603, 1736
SpeI	ACTAGT	1 cut(s)	1162
SphI	GCATGC	1 cut(s)	512
SseBI	AGGCCT	1 cut(s)	1443
SsiI	CCGC	6 cut(s)	84, 152, 298, 1021, 2018, 2036
SspMI	CTAG	5 cut(s)	860, 1163, 1241, 1769, 2087
SstI	GAGCTC	2 cut(s)	483, 819
StuI	AGGCCT	1 cut(s)	1443
StyD4I	CCNGG	4 cut(s)	108, 467, 1912, 2166
StyI	CCWWGG	2 cut(s)	1979, 2196
TaaI	ACNGT	7 cut(s)	71, 215, 319, 866, 926, 1393, 2103
TaiI	ACGT	1 cut(s)	805
TaqI	TCGA	5 cut(s)	55, 245, 853, 1604, 2342
TatI	WGTACW	2 cut(s)	1159, 1452
TauI	GCSGC	1 cut(s)	2039
TfiI	GAWTC	2 cut(s)	247, 1319
Tru1I	TTAA	7 cut(s)	279, 996, 1128, 1584, 1623, 1724, 2126
Tru9I	TTAA	7 cut(s)	279, 996, 1128, 1584, 1623, 1724, 2126
TscAI	CASTG	6 cut(s)	31, 241, 294, 1337, 1396, 1583
TseFI	GTSAC	3 cut(s)	285, 523, 1687
TseI	GCWGC	6 cut(s)	176, 295, 1198, 1559, 2201, 2368
Tsp45I	GTSAC	3 cut(s)	285, 523, 1687
TspDTI	ATGAA	7 cut(s)	78, 706, 1130, 1223, 1452, 2106, 2242
TspGWI	ACGGA	2 cut(s)	629, 2368
TspRI	CASTG	6 cut(s)	31, 241, 294, 1337, 1396, 1583
Tth111I	GACNNNGTC	1 cut(s)	1412
Vha464I	CTTAAG	1 cut(s)	1583
VpaK11BI	GGWCC	1 cut(s)	1839
XapI	RAATTY	5 cut(s)	419, 1008, 1818, 1969, 2351
XbaI	TCTAGA	1 cut(s)	859
XceI	RCATGY	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
XhoI	CTCGAG	1 cut(s)	1603
XmnI	GAANNNNTTC	1 cut(s)	1044
XspI	CTAG	5 cut(s)	860, 1163, 1241, 1769, 2087
ZrmI	AGTACT	1 cut(s)	1454
Zsp2I	ATGCAT	2 cut(s)	393, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.