RchiOBHm_Chr5g0043871

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015576
Physical Location & Seq
Forward (+)
38932694 .. 38933781
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 489 bp
ATGCAATACATCCTACTTTTGCAGCCTGAAAGACTAGATGCACAAGAAAGGCTTCGTGCAGTAGATGGTCGGGTTTTCCATCACAACGGCATGCGTGTATATGGAATTCTTAACATGTCTCATTCCACAGTGCAAACAGGGGATCACTACCTTCTGAATATTTCCATCACAGAACGAGAGGGAAATGAAGATGAATGCTTGATTCTAGCCAATCATGGTATTTGGGATGCTATATCAGATGACATGGCTTGCAGGGTAGCTAGAACATGTCTCACATTTGAAGATGGGGAAGCTGCTAGAGCTCCAGCCAAAGATGGTCGTCTTTATGGTCCAGACACGTGTGATCATGAGACGAACATGTTTTTCTCTTCCAAAACCAACAGTGCAGCTGCAATACTCTGCCGCCTCGCTTTGGGCCGTGGCAGTCGAGGCGATATAAGTGTCATTGTTATCGATTTAATGGTTAGGTCGAAGTCAAGGCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

162

Amino Acids

18.11

Weight (kDa)

6.05

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 9 - 102 5.3e-08 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015576)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24380
malus_domestica MD01G1191100.v1.1
prunus_persica Prupe.2G285600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043861 RchiOBHm_Chr5g0043871
rosa_laevigata RLG00000034220
rosa_multiflora Rmu_co8273823.1_g000001 Rmu_sc0009227.1_g000016 Rmu_sc0010851.1_g000002
rosa_roxburghii Rroxscaffold_1G00037190
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292900 Rh5BG301000 Rh5CG328600 Rh5DG309900
rosa_wichuraiana Rw5G027160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 403
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 1 cut(s) 105
AcvI CACGTG 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 412
AflIII ACRYGT 5 cut(s) 114, 266, 336, 338, 357
AgsI TTSAA 1 cut(s) 281
AluBI AGCT 4 cut(s) 260, 293, 302, 389
AluI AGCT 4 cut(s) 260, 293, 302, 389
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 3 cut(s) 123, 275, 344
AlwI GGATC 1 cut(s) 150
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 4 cut(s) 22, 293, 386, 389
ApoI RAATTY 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 51
AspS9I GGNCC 2 cut(s) 329, 415
AvaII GGWCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 304
BbrPI CACGTG 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 4 cut(s) 34, 280, 376, 398
BccI CCATC 5 cut(s) 59, 87, 173, 278, 308
BceAI ACGGC 2 cut(s) 103, 402
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 3 cut(s) 123, 275, 344
BfaI CTAG 4 cut(s) 35, 206, 261, 297
BisI GCNGC 5 cut(s) 23, 294, 387, 390, 403
BlsI GCNGC 5 cut(s) 24, 295, 388, 391, 404
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 2 cut(s) 329, 415
BmsI GCATC 2 cut(s) 28, 217
BpmI CTGGAG 1 cut(s) 288
Bsa29I ATCGAT 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 418
Bsc4I CCNNNNNNNGG 1 cut(s) 412
BseCI ATCGAT 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 418
BseGI GGATG 2 cut(s) 9, 232
BseLI CCNNNNNNNGG 1 cut(s) 412
BseXI GCAGC 4 cut(s) 34, 280, 376, 398
BsgI GTGCAG 2 cut(s) 78, 405
BshFI GGCC 1 cut(s) 417
BshVI ATCGAT 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 3 cut(s) 123, 275, 344
BsmBI CGTCTC 1 cut(s) 344
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 2 cut(s) 142, 343
BspACI CCGC 1 cut(s) 403
BspANI GGCC 1 cut(s) 417
BspDI ATCGAT 1 cut(s) 453
BspHI TCATGA 1 cut(s) 346
BspPI GGATC 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 2 cut(s) 142, 343
Bst4CI ACNGT 2 cut(s) 130, 383
Bst6I CTCTTC 1 cut(s) 373
BstBAI YACGTR 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 92, 250
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 2 cut(s) 9, 232
BstKTI GATC 2 cut(s) 145, 346
BstMAI GTCTC 3 cut(s) 123, 275, 344
BstMBI GATC 2 cut(s) 142, 343
BstMWI GCNNNNNNNGC 2 cut(s) 299, 429
BstNSI RCATGY 4 cut(s) 94, 118, 270, 361
BstV1I GCAGC 4 cut(s) 34, 280, 376, 398
Bsu15I ATCGAT 1 cut(s) 453
BsuRI GGCC 1 cut(s) 417
BsuTUI ATCGAT 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 2 cut(s) 9, 232
BtsIMutI CAGTG 2 cut(s) 135, 388
Cac8I GCNNGC 2 cut(s) 92, 250
CciI TCATGA 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 329, 415
ClaI ATCGAT 1 cut(s) 453
CviAII CATG 7 cut(s) 91, 115, 215, 244, 267, 347, 358
DpnI GATC 2 cut(s) 144, 345
DpnII GATC 2 cut(s) 142, 343
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 329
Eco53kI GAGCTC 1 cut(s) 302
Eco72I CACGTG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 7 cut(s) 94, 118, 218, 247, 270, 350, 361
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 7 cut(s) 90, 114, 214, 243, 266, 346, 357
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 5 cut(s) 23, 294, 387, 390, 403
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 5 cut(s) 23, 294, 387, 390, 403
FspBI CTAG 4 cut(s) 35, 206, 261, 297
GluI GCNGC 5 cut(s) 23, 294, 387, 390, 403
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 1 cut(s) 417
Hin1II CATG 7 cut(s) 94, 118, 218, 247, 270, 350, 361
HinfI GANTC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 156, 238
Hpy188III TCNNGA 2 cut(s) 332, 347
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 130, 383
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 8 cut(s) 4, 22, 41, 59, 133, 252, 386, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 429
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 7 cut(s) 94, 118, 218, 247, 270, 350, 361
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 142, 343
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 5 cut(s) 39, 123, 238, 318, 345
Lsp1109I GCAGC 4 cut(s) 34, 280, 376, 398
LweI GCATC 2 cut(s) 28, 217
MaeI CTAG 4 cut(s) 35, 206, 261, 297
MaeII ACGT 1 cut(s) 338
MalI GATC 2 cut(s) 144, 345
MboI GATC 2 cut(s) 142, 343
MboII GAAGA 3 cut(s) 200, 293, 360
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 1 cut(s) 105
MnlI CCTC 3 cut(s) 172, 416, 422
MroXI GAANNNNTTC 1 cut(s) 51
MseI TTAA 2 cut(s) 111, 458
MspA1I CMGCKG 1 cut(s) 389
Mva1269I GAATGC 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 299, 429
NdeII GATC 2 cut(s) 142, 343
NlaIII CATG 7 cut(s) 94, 118, 218, 247, 270, 350, 361
NspI RCATGY 4 cut(s) 94, 118, 270, 361
PaeI GCATGC 1 cut(s) 94
PagI TCATGA 1 cut(s) 346
PciI ACATGT 3 cut(s) 114, 266, 357
PctI GAATGC 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 51
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 5 cut(s) 24, 295, 388, 391, 404
PmaCI CACGTG 1 cut(s) 339
PmlI CACGTG 1 cut(s) 339
Ppu21I YACGTR 1 cut(s) 339
PscI ACATGT 3 cut(s) 114, 266, 357
Psp124BI GAGCTC 1 cut(s) 304
PspCI CACGTG 1 cut(s) 339
PspPI GGNCC 2 cut(s) 329, 415
PvuII CAGCTG 1 cut(s) 389
SacI GAGCTC 1 cut(s) 304
SaqAI TTAA 2 cut(s) 111, 458
SatI GCNGC 5 cut(s) 23, 294, 387, 390, 403
Sau3AI GATC 2 cut(s) 142, 343
Sau96I GGNCC 2 cut(s) 329, 415
SduI GDGCHC 1 cut(s) 304
SetI ASST 7 cut(s) 153, 262, 295, 304, 341, 391, 470
SfaNI GCATC 2 cut(s) 28, 217
SinI GGWCC 1 cut(s) 329
SphI GCATGC 1 cut(s) 94
Sse9I AATT 1 cut(s) 105
SsiI CCGC 1 cut(s) 403
SspI AATATT 1 cut(s) 160
SspMI CTAG 4 cut(s) 35, 206, 261, 297
SstI GAGCTC 1 cut(s) 304
TaaI ACNGT 2 cut(s) 130, 383
TaiI ACGT 1 cut(s) 341
TaqI TCGA 3 cut(s) 427, 453, 470
TasI AATT 1 cut(s) 105
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 2 cut(s) 111, 458
Tru9I TTAA 2 cut(s) 111, 458
TscAI CASTG 2 cut(s) 135, 388
TseI GCWGC 4 cut(s) 22, 293, 386, 389
TspDTI ATGAA 2 cut(s) 201, 207
TspRI CASTG 2 cut(s) 135, 388
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 1 cut(s) 105
XceI RCATGY 4 cut(s) 94, 118, 270, 361
XmnI GAANNNNTTC 1 cut(s) 51
XspI CTAG 4 cut(s) 35, 206, 261, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.