RchiOBHm_Chr5g0051541

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017321
Physical Location & Seq
Reverse (-)
52790945 .. 52792210
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGCTGAGCAAAACAAGGGAAGCGCAATTAAATAAGCTCGAGAGCCAGATCGATAATGGAGGAGGAGGAGCGTGGGAGTACTTGTGCTTGGTCCGAAAGCTCAAGCTCCAGTCTCGGACGGAAGGGAATGGAGAGCATGTTGCACTTGCAGCCATGGACTGCCAGTGTCTTGATGTTGCAAAGATAATAGGCAAGCTAGAGGCTATGTTGCTTGAGGCAAAGGCATTCTCGGTAGAGGCAGAGAAGGCTTATCTAACATGTGAATTTCTATCTATCCTTCTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19

Protein Analysis

95

Amino Acids

10.45

Weight (kDa)

5.37

Isoelectric Point (pI)

24.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03340
rosa_chinensis RchiOBHm_Chr5g0051541 RchiOBHm_Chr6g0244381 RchiOBHm_Chr7g0229041
rosa_laevigata RLG00000003551 RLG00000007409
rosa_multiflora Rmu_co8186706.1_g000001 Rmu_co8442279.1_g000001
rosa_roxburghii Rroxscaffold_7G00158180
rosa_rugosa Rorug05G0508200
rosa_samantha Rh6AG023300 Rh7DG291700
rosa_wichuraiana Rw2G024010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 257
AluBI AGCT 4 cut(s) 37, 100, 106, 196
AluI AGCT 4 cut(s) 37, 100, 106, 196
Alw26I GTCTC 1 cut(s) 117
Ama87I CYCGRG 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 150
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 151
BmcAI AGTACT 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 5
BpuEI CTTGAG 2 cut(s) 86, 233
Bsa29I ATCGAT 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 123, 153
Bse1I ACTGG 2 cut(s) 109, 163
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 109, 163
BseRI GAGGAG 3 cut(s) 75, 78, 81
BseXI GCAGC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 224
BsoBI CYCGRG 1 cut(s) 38
Bsp143I GATC 1 cut(s) 48
Bsp1720I GCTNAGC 1 cut(s) 5
Bsp19I CCATGG 1 cut(s) 153
BspDI ATCGAT 1 cut(s) 51
BsrI ACTGG 2 cut(s) 109, 163
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 149, 245
BstNSI RCATGY 2 cut(s) 140, 261
BstV1I GCAGC 1 cut(s) 161
Bsu15I ATCGAT 1 cut(s) 51
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 51
Csp6I GTAC 1 cut(s) 79
CviAII CATG 3 cut(s) 137, 154, 258
CviJI RGCY 8 cut(s) 37, 45, 100, 106, 152, 196, 203, 248
CviKI_1 RGCY 8 cut(s) 37, 45, 100, 106, 152, 196, 203, 248
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 5
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 140, 157, 261
FaiI YATR 4 cut(s) 138, 155, 206, 259
FatI CATG 3 cut(s) 136, 153, 257
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 197
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 92
HhaI GCGC 1 cut(s) 25
Hin1II CATG 3 cut(s) 140, 157, 261
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 95, 117
Hpy188III TCNNGA 2 cut(s) 40, 170
HpyAV CCTTC 3 cut(s) 116, 238, 287
HpyCH4V TGCA 3 cut(s) 143, 149, 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 245
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 3 cut(s) 140, 157, 261
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 2 cut(s) 68, 111
LpnPI CCDG 3 cut(s) 59, 122, 176
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 1 cut(s) 197
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MluCI AATT 2 cut(s) 26, 263
MnlI CCTC 6 cut(s) 53, 56, 59, 193, 208, 229
MseI TTAA 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 149, 245
NcoI CCATGG 1 cut(s) 153
NdeII GATC 1 cut(s) 48
NlaIII CATG 3 cut(s) 140, 157, 261
NspI RCATGY 2 cut(s) 140, 261
PaeR7I CTCGAG 1 cut(s) 38
PciI ACATGT 1 cut(s) 257
PctI GAATGC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 151
PscI ACATGT 1 cut(s) 257
PspPI GGNCC 1 cut(s) 91
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 91
ScaI AGTACT 1 cut(s) 80
SetI ASST 4 cut(s) 39, 102, 108, 198
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 1 cut(s) 91
SlaI CTCGAG 1 cut(s) 38
SmlI CTYRAG 3 cut(s) 38, 101, 212
SmoI CTYRAG 3 cut(s) 38, 101, 212
Sse9I AATT 2 cut(s) 26, 263
SspMI CTAG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 153
TaqI TCGA 2 cut(s) 39, 51
TasI AATT 2 cut(s) 26, 263
TatI WGTACW 1 cut(s) 78
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 170
TseI GCWGC 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 1 cut(s) 263
XceI RCATGY 2 cut(s) 140, 261
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XhoI CTCGAG 1 cut(s) 38
XspI CTAG 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.