Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007788

Physical Location & Seq

Genomic Coordinates Forward (+)

1851472 .. 1854707

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTGAGCAAGACGGAGGAGGCGGAATTGAACAGGCTGGAGAGCCAGGTAGATAACGGAGGAGGAGGAGCGTGGGAGTATATGTGCCTGGTGAAGAAGCTGAAGGTGCGGCGGTCGGAGAAGGTTTTGAAGCACGGCATGTCGATCTTGAATGACCTCAGCAAACGATCCAGTCTTGGACCGGAAGTGTGGACTCTATATGAGCAGGTTGCAGTTGCGGCCATGGACTGCCAGAGTCTTGATGTTGCAAAGGACCTCATCAAGCTTTTACGGAAGGAATTTCCAGAGAGTAAAAGAGTTGGTAAGCTAGAGGCTATGTTGCTTGAGGCAAAGGGATCCTGGGCAGAGGCGGAGAAGGCTTATTCAAGCCTTTTGGAAGATAGTCCACTTGATCAAGTAATACATAAGAGAAGGGTAGCGATGGCAAAGGCGCAAGGCGATACTTCAGGCGCCATTGAATGGCTTAACAAATATCTTGAAATATTTATGGCCGATAATGATGCTTGGAGAGAGCTGGCAGAGATCTATGTCTCATTGCAAATGTACAAGCAAGCTGCGTTCTGCTATGAGGAGCTGATATTAGCACAACCTACTGTTCCGCTCTACCACTTGGCTTATGCTGATATTCTTTACACTCTTGGTGGATTAGAAAACATACAGACAGCAAAGAAGTACTACGCTTCTGTTATAGACTTGACTGGGGGCAAGAATATCAGAGCACTATTTGGAATTAGCTTGTGTACTTCTGCCATCGGACAACTTGCGAAAGGAAGGAACAAGGAAGACAAGGAGACCCCAGAGCTACAGTCACTGGTAGTAACAGCCTTGGAGAAAGACTACAAGCAAAGAGCTCCGGACAAGCTTTTTCTGCTTACTACTGCCTTAAAATCATTGAAAGTTTCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19

Protein Analysis

303

Amino Acids

33.79

Weight (kDa)

6.86

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_EMC2	PF22890	100 - 209	7.5e-57	EMC2 TPR-like repeat domain
TPR_19	PF14559	144 - 209	6.8e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04830 AT3G04830 AT5G28220
fragaria_vesca	FvH4_6g03340
malus_domestica	MD04G1221600.v1.1 MD12G1237600.v1.1
prunus_persica	Prupe.6G340800_v2.0.a1
pyrus_communis	pycom04g19600 pycom12g21850
rosa_chinensis	RchiOBHm_Chr3g0451841
rosa_laevigata	RLG00000002508 RLG00000015364 RLG00000025644
rosa_multiflora	Rmu_sc0002901.1_g000010 Rmu_sc0006510.1_g000013
rosa_roxburghii	Rroxscaffold_164G00436280 Rroxscaffold_6G00429010
rosa_rugosa	Rorug02G0636600
rosa_samantha	Rh3AG038400 Rh3BG039700 Rh3CG038100 Rh3DG038900
rosa_wichuraiana	Rw3G002850 Rw6G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	459
AccBSI	CCGCTC	1 cut(s)	601
AccIII	TCCGGA	1 cut(s)	853
AciI	CCGC	6 cut(s)	23, 109, 112, 218, 350, 599
AclWI	GGATC	3 cut(s)	162, 330, 343
AcoI	YGGCCR	2 cut(s)	219, 489
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	2 cut(s)	122, 429
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	3 cut(s)	545, 674, 742
AfiI	CCNNNNNNNGG	1 cut(s)	459
AgsI	TTSAA	7 cut(s)	31, 130, 151, 366, 458, 479, 895
AjnI	CCWGG	3 cut(s)	45, 87, 338
Alw21I	GWGCWC	2 cut(s)	721, 853
Alw26I	GTCTC	2 cut(s)	535, 785
AlwI	GGATC	3 cut(s)	162, 330, 343
AlwNI	CAGNNNCTG	1 cut(s)	811
Aor13HI	TCCGGA	1 cut(s)	853
AoxI	GGCC	2 cut(s)	219, 489
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	433, 452
AspS9I	GGNCC	2 cut(s)	179, 253
AsuHPI	GGTGA	2 cut(s)	16, 103
AvaII	GGWCC	2 cut(s)	179, 253
BamHI	GGATCC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	853
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	2 cut(s)	721, 853
BbvCI	CCTCAGC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	2 cut(s)	415, 758
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciT130I	CCWGG	3 cut(s)	47, 89, 340
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	535, 785
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	803
BfoI	RGCGCY	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	196
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	3 cut(s)	110, 219, 555
BlsI	GCNGC	3 cut(s)	111, 220, 556
BmcAI	AGTACT	1 cut(s)	674
Bme1390I	CCNGG	3 cut(s)	47, 89, 340
Bme18I	GGWCC	2 cut(s)	179, 253
BmgT120I	GGNCC	2 cut(s)	179, 253
BmiI	GGNNCC	2 cut(s)	337, 451
BmrFI	CCNGG	3 cut(s)	47, 89, 340
BmrI	ACTGGG	1 cut(s)	708
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	1 cut(s)	708
BpiI	GAAGAC	1 cut(s)	789
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	3 cut(s)	222, 339, 825
BsaWI	WCCGGW	2 cut(s)	181, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	3 cut(s)	171, 703, 816
Bse3DI	GCAATG	1 cut(s)	533
BseAI	TCCGGA	1 cut(s)	853
BseBI	CCWGG	3 cut(s)	47, 89, 340
BseDI	CCNNGG	3 cut(s)	222, 339, 825
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	3 cut(s)	171, 703, 816
BseRI	GAGGAG	5 cut(s)	32, 75, 78, 81, 584
BseXI	GCAGC	1 cut(s)	541
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	221, 491
BshNI	GGYRCC	1 cut(s)	449
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	2 cut(s)	721, 853
BsiSI	CCGG	2 cut(s)	182, 854
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	2 cut(s)	535, 785
BsnI	GGCC	2 cut(s)	221, 491
Bso31I	GGTCTC	1 cut(s)	785
Bsp1286I	GDGCHC	2 cut(s)	721, 853
Bsp13I	TCCGGA	1 cut(s)	853
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	5 cut(s)	144, 167, 335, 391, 522
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	6 cut(s)	23, 109, 112, 218, 350, 599
BspANI	GGCC	2 cut(s)	221, 491
BspCNI	CTCAG	1 cut(s)	171
BspEI	TCCGGA	1 cut(s)	853
BspLI	GGNNCC	2 cut(s)	337, 451
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	3 cut(s)	162, 330, 343
BspT107I	GGYRCC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	785
BsrBI	CCGCTC	1 cut(s)	601
BsrDI	GCAATG	1 cut(s)	533
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	3 cut(s)	171, 703, 816
BssECI	CCNNGG	3 cut(s)	222, 339, 825
BssMI	GATC	5 cut(s)	144, 167, 335, 391, 522
BssNI	GRCGYC	1 cut(s)	450
BssT1I	CCWWGG	2 cut(s)	222, 825
Bst2UI	CCWGG	3 cut(s)	47, 89, 340
Bst4CI	ACNGT	2 cut(s)	595, 807
BstACI	GRCGYC	1 cut(s)	450
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	2 cut(s)	516, 552
BstDEI	CTNAG	1 cut(s)	158
BstDSI	CCRYGG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	2 cut(s)	433, 452
BstKTI	GATC	5 cut(s)	147, 170, 338, 394, 525
BstMAI	GTCTC	2 cut(s)	535, 785
BstMBI	GATC	5 cut(s)	144, 167, 335, 391, 522
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 218, 356, 868
BstNI	CCWGG	3 cut(s)	47, 89, 340
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	3 cut(s)	45, 87, 338
BstSFI	CTRYAG	1 cut(s)	803
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	789
BstX2I	RGATCY	2 cut(s)	335, 522
BstYI	RGATCY	2 cut(s)	335, 522
BsuRI	GGCC	2 cut(s)	221, 491
BtgI	CCRYGG	1 cut(s)	222
BtgZI	GCGATG	1 cut(s)	434
BtsIMutI	CAGTG	1 cut(s)	809
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	516, 552
CaiI	CAGNNNCTG	1 cut(s)	811
CfoI	GCGC	2 cut(s)	433, 452
Cfr13I	GGNCC	2 cut(s)	179, 253
Csp6I	GTAC	3 cut(s)	544, 673, 741
CviAII	CATG	2 cut(s)	139, 223
CviQI	GTAC	3 cut(s)	544, 673, 741
DdeI	CTNAG	1 cut(s)	158
DinI	GGCGCC	1 cut(s)	451
DpnI	GATC	5 cut(s)	146, 169, 337, 393, 524
DpnII	GATC	5 cut(s)	144, 167, 335, 391, 522
EaeI	YGGCCR	2 cut(s)	219, 489
EciI	GGCGGA	2 cut(s)	38, 365
Ecl136II	GAGCTC	1 cut(s)	851
Eco130I	CCWWGG	2 cut(s)	222, 825
Eco24I	GRGCYC	1 cut(s)	853
Eco31I	GGTCTC	1 cut(s)	785
Eco47I	GGWCC	2 cut(s)	179, 253
Eco53kI	GAGCTC	1 cut(s)	851
Eco57I	CTGAAG	2 cut(s)	122, 429
EcoICRI	GAGCTC	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	3 cut(s)	45, 87, 338
EcoT14I	CCWWGG	2 cut(s)	222, 825
EcoT38I	GRGCYC	1 cut(s)	853
EgeI	GGCGCC	1 cut(s)	451
EheI	GGCGCC	1 cut(s)	451
ErhI	CCWWGG	2 cut(s)	222, 825
FaeI	CATG	2 cut(s)	142, 226
FatI	CATG	2 cut(s)	138, 222
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	110, 219, 555
FriOI	GRGCYC	1 cut(s)	853
Fsp4HI	GCNGC	3 cut(s)	110, 219, 555
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	2 cut(s)	432, 451
GluI	GCNGC	3 cut(s)	110, 219, 555
GsuI	CTGGAG	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	221, 491
HapII	CCGG	2 cut(s)	182, 854
HhaI	GCGC	2 cut(s)	433, 452
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	2 cut(s)	142, 226
Hin6I	GCGC	2 cut(s)	431, 450
HinP1I	GCGC	2 cut(s)	431, 450
HindIII	AAGCTT	2 cut(s)	263, 860
HinfI	GANTC	2 cut(s)	193, 235
HpaII	CCGG	2 cut(s)	182, 854
HphI	GGTGA	2 cut(s)	16, 103
Hpy166II	GTNNAC	3 cut(s)	192, 386, 741
Hpy188I	TCNGA	3 cut(s)	118, 716, 755
Hpy188III	TCNNGA	5 cut(s)	148, 239, 284, 476, 854
Hpy8I	GTNNAC	3 cut(s)	192, 386, 741
HpyAV	CCTTC	6 cut(s)	97, 115, 268, 349, 405, 765
HpyCH4III	ACNGT	2 cut(s)	595, 807
HpyCH4V	TGCA	3 cut(s)	212, 248, 538
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 218, 356, 868
HpyF3I	CTNAG	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	142, 226
HspAI	GCGC	2 cut(s)	431, 450
KasI	GGCGCC	1 cut(s)	449
Kpn2I	TCCGGA	1 cut(s)	853
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	5 cut(s)	144, 167, 335, 391, 522
LmnI	GCTCC	3 cut(s)	68, 571, 856
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	807, 817
MalI	GATC	5 cut(s)	146, 169, 337, 393, 524
MbiI	CCGCTC	1 cut(s)	601
MboI	GATC	5 cut(s)	144, 167, 335, 391, 522
MboII	GAAGA	3 cut(s)	106, 389, 794
MflI	RGATCY	2 cut(s)	335, 522
MhlI	GDGCHC	2 cut(s)	721, 853
MluCI	AATT	3 cut(s)	26, 278, 729
Mly113I	GGCGCC	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	187, 244
MmeI	TCCRAC	1 cut(s)	96
MroI	TCCGGA	1 cut(s)	853
MseI	TTAA	2 cut(s)	465, 884
MspI	CCGG	2 cut(s)	182, 854
MspR9I	CCNGG	3 cut(s)	47, 89, 340
MvaI	CCWGG	3 cut(s)	47, 89, 340
MwoI	GCNNNNNNNGC	4 cut(s)	106, 218, 356, 868
NarI	GGCGCC	1 cut(s)	450
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	5 cut(s)	144, 167, 335, 391, 522
NlaIII	CATG	2 cut(s)	142, 226
NlaIV	GGNNCC	2 cut(s)	337, 451
NmuCI	GTSAC	1 cut(s)	807
NspI	RCATGY	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	111, 220, 556
PleI	GAGTC	2 cut(s)	187, 243
PluTI	GGCGCC	1 cut(s)	453
PpsI	GAGTC	2 cut(s)	187, 243
PpuMI	RGGWCCY	1 cut(s)	253
Psp124BI	GAGCTC	1 cut(s)	853
Psp5II	RGGWCCY	1 cut(s)	253
Psp6I	CCWGG	3 cut(s)	45, 87, 338
PspGI	CCWGG	3 cut(s)	45, 87, 338
PspN4I	GGNNCC	2 cut(s)	337, 451
PspPI	GGNCC	2 cut(s)	179, 253
PspPPI	RGGWCCY	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	811
PsuI	RGATCY	2 cut(s)	335, 522
RsaI	GTAC	3 cut(s)	545, 674, 742
RsaNI	GTAC	3 cut(s)	544, 673, 741
SacI	GAGCTC	1 cut(s)	853
SaqAI	TTAA	2 cut(s)	465, 884
SatI	GCNGC	3 cut(s)	110, 219, 555
Sau3AI	GATC	5 cut(s)	144, 167, 335, 391, 522
Sau96I	GGNCC	2 cut(s)	179, 253
ScaI	AGTACT	1 cut(s)	674
SchI	GAGTC	2 cut(s)	187, 244
ScrFI	CCNGG	3 cut(s)	47, 89, 340
SduI	GDGCHC	2 cut(s)	721, 853
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	803
SfoI	GGCGCC	1 cut(s)	451
SinI	GGWCC	2 cut(s)	179, 253
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	26, 278, 729
SsiI	CCGC	6 cut(s)	23, 109, 112, 218, 350, 599
SspDI	GGCGCC	1 cut(s)	449
SspI	AATATT	1 cut(s)	483
SspMI	CTAG	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	853
StyD4I	CCNGG	3 cut(s)	45, 87, 338
StyI	CCWWGG	2 cut(s)	222, 825
TaaI	ACNGT	2 cut(s)	595, 807
TaqI	TCGA	1 cut(s)	143
TasI	AATT	3 cut(s)	26, 278, 729
TatI	WGTACW	3 cut(s)	543, 672, 740
TauI	GCSGC	2 cut(s)	112, 221
Tru1I	TTAA	2 cut(s)	465, 884
Tru9I	TTAA	2 cut(s)	465, 884
TscAI	CASTG	1 cut(s)	816
TseFI	GTSAC	1 cut(s)	807
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	807
TspDTI	ATGAA	1 cut(s)	891
TspGWI	ACGGA	3 cut(s)	29, 72, 286
TspRI	CASTG	1 cut(s)	816
Van91I	CCANNNNNTGG	1 cut(s)	459
VpaK11BI	GGWCC	2 cut(s)	179, 253
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	1 cut(s)	142
XspI	CTAG	1 cut(s)	308
ZrmI	AGTACT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.