Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007788

Physical Location & Seq

Genomic Coordinates Reverse (-)

29444773 .. 29448201

Gene Structure 3429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G340800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTGAGCAAAACAGAGGAGACCCAGTTGAACAGGCTCGAGAACCAGGTCGATAATGGAGGAGGAGGGGCTTGGGAGTACCTCTGCCTGGTCAGAAAGCTCAAGGTCCGGCGTTCCGAGAAGGTGCTAAAGCATGGCTTGTCGATCTTGAACGACATCAAAAAACGATCAAGTCTTGGCCCGGACGAATGGACTTTATATGAGCAAGTTGCAATTGCAGCCATGGACTGCCAATGTCTTGATGTTGCAAAGGACTGCATTAGGCTTTTACGGAAGTCATTTCCAGAGAGTAAAAGAGTTGGCAGGCTAGAGGCTATGTTGCTTGAGGCGAAGGGAGCTTGGGCAGAGGCAGAGAAGGCTTACTCGAGCTTTTTGGAGGAAAATCCACTCGATCAAGTAATACATAAGAGAAGAGTAGCTATGGCGAAGGCACAGGGAAATATTTCAGGAGCCATTGAGTGGCTTAATAAGTATTTGGAAATATTTATGGCTGATCATGATGCTTGGAGAGAGCTGGCTGAAATATATGTTTCCTTGCAGATGTACAAGCAAGCTGCGTTCTGCTATGAGGAGCTGATATTATCTCAACCTACTGTTCCACTTCACCACTTAGCATATGCTGATGTGCTTTACACACTTGGTGGACTAGAAAACCTTCAGACAGCAAAAAAATACTACGCATCCGTTATAGACTTGACTGGGGGCAAGAATATCAGAGCACTTTTTGGTATTAACTTGTGCACTTCTGCAATTGGACAGCTTGCAAAAGGAAGGAACAAGGAAGACAAGGAGAGCTCAGAGCTACAATCACTGGCAGCAACAGCCTTGGAGAAAGACTACAAGCAGAGAGCTCCCGACAAACTTTCCCTGCTTACTACTGCCTTAAAAAGCTTGAAAGTTTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19

Protein Analysis

303

Amino Acids

33.89

Weight (kDa)

8.38

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04830 AT3G04830 AT5G28220
fragaria_vesca	FvH4_6g03340
malus_domestica	MD04G1221600.v1.1 MD12G1237600.v1.1
prunus_persica	Prupe.6G340800_v2.0.a1
pyrus_communis	pycom04g19600 pycom12g21850
rosa_chinensis	RchiOBHm_Chr3g0451841
rosa_laevigata	RLG00000002508 RLG00000015364 RLG00000025644
rosa_multiflora	Rmu_sc0002901.1_g000010 Rmu_sc0006510.1_g000013
rosa_roxburghii	Rroxscaffold_164G00436280 Rroxscaffold_6G00429010
rosa_rugosa	Rorug02G0636600
rosa_samantha	Rh3AG038400 Rh3BG039700 Rh3CG038100 Rh3DG038900
rosa_wichuraiana	Rw3G002850 Rw6G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	641
AdeI	CACNNNGTG	1 cut(s)	641
AfaI	GTAC	2 cut(s)	80, 545
AfiI	CCNNNNNNNGG	2 cut(s)	88, 459
AgsI	TTSAA	3 cut(s)	31, 151, 895
AjnI	CCWGG	2 cut(s)	45, 87
Alw21I	GWGCWC	4 cut(s)	721, 743, 797, 853
Alw26I	GTCTC	1 cut(s)	14
Alw44I	GTGCAC	1 cut(s)	739
Ama87I	CYCGRG	2 cut(s)	38, 364
AoxI	GGCC	1 cut(s)	178
ApaLI	GTGCAC	1 cut(s)	739
ApeKI	GCWGC	3 cut(s)	218, 554, 815
Asp700I	GAANNNNTTC	2 cut(s)	442, 654
AspS9I	GGNCC	2 cut(s)	106, 179
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	16, 596
AvaI	CYCGRG	2 cut(s)	38, 364
AvaII	GGWCC	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	743
BanII	GRGCYC	2 cut(s)	797, 853
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	4 cut(s)	721, 743, 797, 853
BbvI	GCAGC	3 cut(s)	230, 541, 827
BciT130I	CCWGG	2 cut(s)	47, 89
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	308, 647
BisI	GCNGC	3 cut(s)	219, 555, 816
BlsI	GCNGC	3 cut(s)	220, 556, 817
Bme1390I	CCNGG	3 cut(s)	47, 89, 182
Bme18I	GGWCC	1 cut(s)	106
BmeT110I	CYCGRG	2 cut(s)	38, 364
BmgT120I	GGNCC	2 cut(s)	106, 179
BmiI	GGNNCC	1 cut(s)	451
BmrFI	CCNGG	3 cut(s)	47, 89, 182
BmrI	ACTGGG	2 cut(s)	19, 708
BmsI	GCATC	2 cut(s)	490, 689
BmuI	ACTGGG	2 cut(s)	19, 708
BpiI	GAAGAC	1 cut(s)	789
BpuEI	CTTGAG	2 cut(s)	86, 344
BpuMI	CCSGG	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	222, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 459
Bse1I	ACTGG	3 cut(s)	25, 703, 816
BseBI	CCWGG	2 cut(s)	47, 89
BseDI	CCNNGG	2 cut(s)	222, 825
BseGI	GGATG	1 cut(s)	680
BseLI	CCNNNNNNNGG	2 cut(s)	88, 459
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	3 cut(s)	25, 703, 816
BseRI	GAGGAG	4 cut(s)	32, 75, 78, 584
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	3 cut(s)	230, 541, 827
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	4 cut(s)	721, 743, 797, 853
BsiHKCI	CYCGRG	2 cut(s)	38, 364
BsiSI	CCGG	2 cut(s)	109, 182
BslI	CCNNNNNNNGG	2 cut(s)	88, 459
BsmAI	GTCTC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	14
BsoBI	CYCGRG	2 cut(s)	38, 364
Bsp1286I	GDGCHC	4 cut(s)	721, 743, 797, 853
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	144, 167, 391, 493
Bsp19I	CCATGG	1 cut(s)	222
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	809
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	3 cut(s)	25, 703, 816
BssECI	CCNNGG	2 cut(s)	222, 825
BssMI	GATC	4 cut(s)	144, 167, 391, 493
BssT1I	CCWWGG	2 cut(s)	222, 825
Bst2UI	CCWGG	2 cut(s)	47, 89
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	406
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	4 cut(s)	305, 516, 552, 762
BstDEI	CTNAG	2 cut(s)	610, 796
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	680
BstKTI	GATC	4 cut(s)	147, 170, 394, 496
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	4 cut(s)	144, 167, 391, 493
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 335, 356, 821
BstNI	CCWGG	2 cut(s)	47, 89
BstSCI	CCNGG	3 cut(s)	45, 87, 180
BstSLI	GKGCMC	1 cut(s)	743
BstV1I	GCAGC	3 cut(s)	230, 541, 827
BstV2I	GAAGAC	1 cut(s)	789
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	680
BtsIMutI	CAGTG	1 cut(s)	809
Cac8I	GCNNGC	4 cut(s)	305, 516, 552, 762
CciI	TCATGA	1 cut(s)	496
Cfr13I	GGNCC	2 cut(s)	106, 179
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	79, 544
CviAII	CATG	3 cut(s)	134, 223, 497
CviQI	GTAC	2 cut(s)	79, 544
DdeI	CTNAG	2 cut(s)	610, 796
DpnI	GATC	4 cut(s)	146, 169, 393, 495
DpnII	GATC	4 cut(s)	144, 167, 391, 493
DraIII	CACNNNGTG	1 cut(s)	641
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
Ecl136II	GAGCTC	2 cut(s)	795, 851
Eco130I	CCWWGG	2 cut(s)	222, 825
Eco24I	GRGCYC	2 cut(s)	797, 853
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	2 cut(s)	795, 851
Eco57I	CTGAAG	1 cut(s)	641
Eco88I	CYCGRG	2 cut(s)	38, 364
EcoICRI	GAGCTC	2 cut(s)	795, 851
EcoRII	CCWGG	2 cut(s)	45, 87
EcoT14I	CCWWGG	2 cut(s)	222, 825
EcoT38I	GRGCYC	2 cut(s)	797, 853
ErhI	CCWWGG	2 cut(s)	222, 825
FaeI	CATG	3 cut(s)	137, 226, 500
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	3 cut(s)	133, 222, 496
FauNDI	CATATG	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	219, 555, 816
FokI	GGATG	1 cut(s)	667
FriOI	GRGCYC	2 cut(s)	797, 853
Fsp4HI	GCNGC	3 cut(s)	219, 555, 816
FspBI	CTAG	2 cut(s)	308, 647
GluI	GCNGC	3 cut(s)	219, 555, 816
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	109, 182
Hin1II	CATG	3 cut(s)	137, 226, 500
HindIII	AAGCTT	1 cut(s)	889
HpaII	CCGG	2 cut(s)	109, 182
HphI	GGTGA	2 cut(s)	16, 596
Hpy166II	GTNNAC	2 cut(s)	644, 741
Hpy188I	TCNGA	5 cut(s)	95, 118, 660, 716, 799
Hpy188III	TCNNGA	7 cut(s)	40, 148, 239, 284, 447, 497, 854
Hpy8I	GTNNAC	2 cut(s)	644, 741
HpyAV	CCTTC	6 cut(s)	115, 325, 349, 421, 665, 765
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4V	TGCA	8 cut(s)	212, 218, 248, 258, 538, 741, 749, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 335, 356, 821
HpyF3I	CTNAG	2 cut(s)	610, 796
Hsp92II	CATG	3 cut(s)	137, 226, 500
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	144, 167, 391, 493
LmnI	GCTCC	4 cut(s)	335, 449, 571, 856
Lsp1109I	GCAGC	3 cut(s)	230, 541, 827
LweI	GCATC	2 cut(s)	490, 689
MabI	ACCWGGT	1 cut(s)	45
MaeI	CTAG	2 cut(s)	308, 647
MalI	GATC	4 cut(s)	146, 169, 393, 495
MboI	GATC	4 cut(s)	144, 167, 391, 493
MboII	GAAGA	2 cut(s)	423, 794
MfeI	CAATTG	2 cut(s)	213, 750
MhlI	GDGCHC	4 cut(s)	721, 743, 797, 853
MluCI	AATT	2 cut(s)	213, 750
MroXI	GAANNNNTTC	2 cut(s)	442, 654
MseI	TTAA	3 cut(s)	465, 732, 884
MspI	CCGG	2 cut(s)	109, 182
MspR9I	CCNGG	3 cut(s)	47, 89, 182
MunI	CAATTG	2 cut(s)	213, 750
MvaI	CCWGG	2 cut(s)	47, 89
MwoI	GCNNNNNNNGC	4 cut(s)	218, 335, 356, 821
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	4 cut(s)	144, 167, 391, 493
NlaIII	CATG	3 cut(s)	137, 226, 500
NlaIV	GGNNCC	1 cut(s)	451
PaeR7I	CTCGAG	2 cut(s)	38, 364
PagI	TCATGA	1 cut(s)	496
PdmI	GAANNNNTTC	2 cut(s)	442, 654
PflMI	CCANNNNNTGG	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	220, 556, 817
Psp124BI	GAGCTC	2 cut(s)	797, 853
Psp6I	CCWGG	2 cut(s)	45, 87
PspGI	CCWGG	2 cut(s)	45, 87
PspN4I	GGNNCC	1 cut(s)	451
PspPI	GGNCC	2 cut(s)	106, 179
PspXI	VCTCGAGB	1 cut(s)	364
RsaI	GTAC	2 cut(s)	80, 545
RsaNI	GTAC	2 cut(s)	79, 544
SacI	GAGCTC	2 cut(s)	797, 853
SaqAI	TTAA	3 cut(s)	465, 732, 884
SatI	GCNGC	3 cut(s)	219, 555, 816
Sau3AI	GATC	4 cut(s)	144, 167, 391, 493
Sau96I	GGNCC	2 cut(s)	106, 179
ScrFI	CCNGG	3 cut(s)	47, 89, 182
SduI	GDGCHC	4 cut(s)	721, 743, 797, 853
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	2 cut(s)	490, 689
Sfr274I	CTCGAG	2 cut(s)	38, 364
SinI	GGWCC	1 cut(s)	106
SlaI	CTCGAG	2 cut(s)	38, 364
SmlI	CTYRAG	4 cut(s)	38, 101, 323, 364
SmoI	CTYRAG	4 cut(s)	38, 101, 323, 364
Sse9I	AATT	2 cut(s)	213, 750
SspI	AATATT	2 cut(s)	442, 483
SspMI	CTAG	2 cut(s)	308, 647
SstI	GAGCTC	2 cut(s)	797, 853
StyD4I	CCNGG	3 cut(s)	45, 87, 180
StyI	CCWWGG	2 cut(s)	222, 825
TaaI	ACNGT	1 cut(s)	595
TaqI	TCGA	5 cut(s)	39, 51, 143, 365, 390
TasI	AATT	2 cut(s)	213, 750
TatI	WGTACW	1 cut(s)	543
Tru1I	TTAA	3 cut(s)	465, 732, 884
Tru9I	TTAA	3 cut(s)	465, 732, 884
TscAI	CASTG	1 cut(s)	816
TseI	GCWGC	3 cut(s)	218, 554, 815
TspDTI	ATGAA	1 cut(s)	891
TspGWI	ACGGA	2 cut(s)	286, 673
TspRI	CASTG	1 cut(s)	816
Van91I	CCANNNNNTGG	1 cut(s)	459
VneI	GTGCAC	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XhoI	CTCGAG	2 cut(s)	38, 364
XmnI	GAANNNNTTC	2 cut(s)	442, 654
XspI	CTAG	2 cut(s)	308, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.