Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007788

Physical Location & Seq

Genomic Coordinates Reverse (-)

21290045 .. 21292862

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTGAGCAAAACGGAAGAAACCCAATTGAACAGGCTCGAGAACCAGGTCGACAATGGAGGAGGAGGGGCCTGGGAGTACCTCTGTTTAGTCAGAAAGCTCAAGGTCCGCCGCTCAGAGAAGGTCTTGAAGTACGGCCTGTCGATCTTGAACGACCTCAAGAAAAGATCCAGTCTTGGCTCGGAAGAATGGACTTTATATGAGCAAGTTGCAATTGCAGCTATGGACTGCCAGTCTCTTGATGTTGCTAAGGACTGCATTAGGCTTTTACGTAAGGCATTTCCTGAGAGTAAAAGAGTTGGTAAGCTAGAGGCTATGTTGCTAGAGGCAAAGGGATCTTGGGCAGAGGCAGAGAAGGCTTACTCAAGCTTTCTGGAGGAAAATCCACTCGATCAAGTGATACATAAGAGAAGAGTAGCTATGGCAAAGGCACAAGGAAACATTTCAGGGGCCATTGAGTGGCTTAATAAATATCTGGAAATATTTATGGCTGATCATGATGCGTGGAGAGAGCTGGCTGAAATCTATGTTTCCTTGCAAATGTACAAGCAAGCTGCGTTCTGCTATGAGGAGCTGATATTATCACAACCTACTGTTCCTCTTCACCACTTGGCTTATGCTGATGTGCTATACACGCTTGGTGGACTAGAAAACCTTCAGACAGCAAAAAAATACTACGCATCCGTTATAGACTTGACTGGGGGCAAGAATACCAGAGCACTTTTTGGTATTAACTTGTGCACTTCTGCCATCGGACAGCTTGCAAAAGGAAGGAACAAGGAAGACAAAGAGAGCTTAGAGCTACAATCACTGGCAGCAACGGCCTTGGAGAAAGACTACAAGCAGAGAGCACCTGAAAAACTTTCCCTGCTTACGACAGCCTTGAAAAGCTTGAAAGTTTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19

Protein Analysis

303

Amino Acids

33.9

Weight (kDa)

8.41

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04830 AT3G04830 AT5G28220
fragaria_vesca	FvH4_6g03340
malus_domestica	MD04G1221600.v1.1 MD12G1237600.v1.1
prunus_persica	Prupe.6G340800_v2.0.a1
pyrus_communis	pycom04g19600 pycom12g21850
rosa_chinensis	RchiOBHm_Chr3g0451841
rosa_laevigata	RLG00000002508 RLG00000015364 RLG00000025644
rosa_multiflora	Rmu_sc0002901.1_g000010 Rmu_sc0006510.1_g000013
rosa_roxburghii	Rroxscaffold_164G00436280 Rroxscaffold_6G00429010
rosa_rugosa	Rorug02G0636600
rosa_samantha	Rh3AG038400 Rh3BG039700 Rh3CG038100 Rh3DG038900
rosa_wichuraiana	Rw3G002850 Rw6G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	459
AccBSI	CCGCTC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	2 cut(s)	109, 112
AclWI	GGATC	2 cut(s)	162, 343
AcuI	CTGAAG	1 cut(s)	641
AfaI	GTAC	3 cut(s)	80, 134, 545
AfiI	CCNNNNNNNGG	1 cut(s)	459
AgsI	TTSAA	5 cut(s)	31, 130, 151, 886, 895
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	2 cut(s)	45, 71
Alw21I	GWGCWC	3 cut(s)	721, 743, 853
Alw26I	GTCTC	1 cut(s)	240
Alw44I	GTGCAC	1 cut(s)	739
AlwI	GGATC	2 cut(s)	162, 343
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	4 cut(s)	69, 136, 450, 822
ApaLI	GTGCAC	1 cut(s)	739
ApeKI	GCWGC	3 cut(s)	218, 554, 815
Asp700I	GAANNNNTTC	2 cut(s)	442, 654
AspS9I	GGNCC	3 cut(s)	69, 106, 450
AsuHPI	GGTGA	2 cut(s)	16, 596
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	743
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	3 cut(s)	721, 743, 853
BbvI	GCAGC	3 cut(s)	230, 541, 827
BccI	CCATC	1 cut(s)	758
BceAI	ACGGC	2 cut(s)	151, 837
BciT130I	CCWGG	2 cut(s)	47, 73
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	3 cut(s)	308, 323, 647
BisI	GCNGC	4 cut(s)	112, 219, 555, 816
BlsI	GCNGC	4 cut(s)	113, 220, 556, 817
Bme1390I	CCNGG	2 cut(s)	47, 73
Bme18I	GGWCC	1 cut(s)	106
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	3 cut(s)	69, 106, 450
BmiI	GGNNCC	2 cut(s)	70, 451
BmrFI	CCNGG	2 cut(s)	47, 73
BmrI	ACTGGG	1 cut(s)	708
BmsI	GCATC	2 cut(s)	490, 689
BmuI	ACTGGG	1 cut(s)	708
BpiI	GAAGAC	1 cut(s)	789
BpmI	CTGGAG	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	3 cut(s)	86, 143, 349
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	72, 825
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	4 cut(s)	171, 232, 703, 816
BseBI	CCWGG	2 cut(s)	47, 73
BseDI	CCNNGG	2 cut(s)	72, 825
BseGI	GGATG	1 cut(s)	680
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	129, 276
BseNI	ACTGG	4 cut(s)	171, 232, 703, 816
BseRI	GAGGAG	3 cut(s)	75, 78, 584
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	3 cut(s)	230, 541, 827
BshFI	GGCC	4 cut(s)	71, 138, 452, 824
BsiHKAI	GWGCWC	3 cut(s)	721, 743, 853
BsiHKCI	CYCGRG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	4 cut(s)	71, 138, 452, 824
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	721, 743, 853
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	5 cut(s)	144, 167, 335, 391, 493
BspACI	CCGC	2 cut(s)	109, 112
BspANI	GGCC	4 cut(s)	71, 138, 452, 824
BspCNI	CTCAG	2 cut(s)	128, 277
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	70, 451
BspPI	GGATC	2 cut(s)	162, 343
BsrBI	CCGCTC	1 cut(s)	114
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	4 cut(s)	171, 232, 703, 816
BssECI	CCNNGG	2 cut(s)	72, 825
BssMI	GATC	5 cut(s)	144, 167, 335, 391, 493
BssT1I	CCWWGG	1 cut(s)	825
Bst2UI	CCWGG	2 cut(s)	47, 73
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	2 cut(s)	406, 606
BstAUI	TGTACA	1 cut(s)	543
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	516, 552, 762
BstDEI	CTNAG	4 cut(s)	115, 249, 285, 796
BstF5I	GGATG	1 cut(s)	680
BstKTI	GATC	5 cut(s)	147, 170, 338, 394, 496
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	5 cut(s)	144, 167, 335, 391, 493
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 356, 634, 821
BstNI	CCWGG	2 cut(s)	47, 73
BstSCI	CCNGG	2 cut(s)	45, 71
BstSLI	GKGCMC	1 cut(s)	743
BstSNI	TACGTA	1 cut(s)	272
BstV1I	GCAGC	3 cut(s)	230, 541, 827
BstV2I	GAAGAC	1 cut(s)	789
BstX2I	RGATCY	2 cut(s)	167, 335
BstYI	RGATCY	2 cut(s)	167, 335
BsuRI	GGCC	4 cut(s)	71, 138, 452, 824
BtsCI	GGATG	1 cut(s)	680
BtsIMutI	CAGTG	1 cut(s)	809
Cac8I	GCNNGC	3 cut(s)	516, 552, 762
CciI	TCATGA	1 cut(s)	496
Cfr13I	GGNCC	3 cut(s)	69, 106, 450
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	3 cut(s)	79, 133, 544
CviAII	CATG	1 cut(s)	497
CviQI	GTAC	3 cut(s)	79, 133, 544
DdeI	CTNAG	4 cut(s)	115, 249, 285, 796
DpnI	GATC	5 cut(s)	146, 169, 337, 393, 495
DpnII	GATC	5 cut(s)	144, 167, 335, 391, 493
DriI	GACNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	406, 606
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	2 cut(s)	406, 606
EciI	GGCGGA	1 cut(s)	98
Eco105I	TACGTA	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	825
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	641
Eco88I	CYCGRG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	45, 71
EcoT14I	CCWWGG	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	825
FaeI	CATG	1 cut(s)	500
FatI	CATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	112, 219, 555, 816
FokI	GGATG	1 cut(s)	667
Fsp4HI	GCNGC	4 cut(s)	112, 219, 555, 816
FspBI	CTAG	3 cut(s)	308, 323, 647
GluI	GCNGC	4 cut(s)	112, 219, 555, 816
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	4 cut(s)	71, 138, 452, 824
Hin1II	CATG	1 cut(s)	500
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	2 cut(s)	367, 889
HphI	GGTGA	2 cut(s)	16, 596
Hpy166II	GTNNAC	3 cut(s)	52, 644, 741
Hpy188I	TCNGA	5 cut(s)	95, 118, 184, 660, 755
Hpy188III	TCNNGA	9 cut(s)	40, 127, 148, 160, 239, 284, 374, 476, 497
Hpy8I	GTNNAC	3 cut(s)	52, 644, 741
HpyAV	CCTTC	4 cut(s)	115, 349, 665, 765
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	6 cut(s)	212, 218, 258, 538, 741, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 356, 634, 821
HpyF3I	CTNAG	4 cut(s)	115, 249, 285, 796
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	5 cut(s)	144, 167, 335, 391, 493
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	3 cut(s)	230, 541, 827
LweI	GCATC	2 cut(s)	490, 689
MabI	ACCWGGT	1 cut(s)	45
MaeI	CTAG	3 cut(s)	308, 323, 647
MaeII	ACGT	1 cut(s)	271
MalI	GATC	5 cut(s)	146, 169, 337, 393, 495
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	5 cut(s)	144, 167, 335, 391, 493
MboII	GAAGA	5 cut(s)	29, 197, 423, 593, 794
MfeI	CAATTG	2 cut(s)	26, 213
MflI	RGATCY	2 cut(s)	167, 335
MhlI	GDGCHC	3 cut(s)	721, 743, 853
MluCI	AATT	2 cut(s)	26, 213
MroXI	GAANNNNTTC	2 cut(s)	442, 654
MseI	TTAA	2 cut(s)	465, 732
MspR9I	CCNGG	2 cut(s)	47, 73
MunI	CAATTG	2 cut(s)	26, 213
MvaI	CCWGG	2 cut(s)	47, 73
MwoI	GCNNNNNNNGC	4 cut(s)	218, 356, 634, 821
NdeII	GATC	5 cut(s)	144, 167, 335, 391, 493
NlaIII	CATG	1 cut(s)	500
NlaIV	GGNNCC	2 cut(s)	70, 451
PaeR7I	CTCGAG	1 cut(s)	38
PagI	TCATGA	1 cut(s)	496
PdmI	GAANNNNTTC	2 cut(s)	442, 654
PflMI	CCANNNNNTGG	1 cut(s)	459
PkrI	GCNGC	4 cut(s)	113, 220, 556, 817
Ppu21I	YACGTR	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	45, 71
PspGI	CCWGG	2 cut(s)	45, 71
PspN4I	GGNNCC	2 cut(s)	70, 451
PspPI	GGNCC	3 cut(s)	69, 106, 450
PsuI	RGATCY	2 cut(s)	167, 335
RsaI	GTAC	3 cut(s)	80, 134, 545
RsaNI	GTAC	3 cut(s)	79, 133, 544
SalI	GTCGAC	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	465, 732
SatI	GCNGC	4 cut(s)	112, 219, 555, 816
Sau3AI	GATC	5 cut(s)	144, 167, 335, 391, 493
Sau96I	GGNCC	3 cut(s)	69, 106, 450
ScrFI	CCNGG	2 cut(s)	47, 73
SduI	GDGCHC	3 cut(s)	721, 743, 853
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	2 cut(s)	490, 689
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	1 cut(s)	106
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	4 cut(s)	38, 101, 158, 364
SmoI	CTYRAG	4 cut(s)	38, 101, 158, 364
SnaBI	TACGTA	1 cut(s)	272
Sse9I	AATT	2 cut(s)	26, 213
SsiI	CCGC	2 cut(s)	109, 112
SspI	AATATT	1 cut(s)	483
SspMI	CTAG	3 cut(s)	308, 323, 647
StyD4I	CCNGG	2 cut(s)	45, 71
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	1 cut(s)	595
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	4 cut(s)	39, 51, 143, 390
TasI	AATT	2 cut(s)	26, 213
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	465, 732
Tru9I	TTAA	2 cut(s)	465, 732
TscAI	CASTG	1 cut(s)	816
TseI	GCWGC	3 cut(s)	218, 554, 815
TspDTI	ATGAA	1 cut(s)	891
TspGWI	ACGGA	2 cut(s)	29, 673
TspRI	CASTG	1 cut(s)	816
Van91I	CCANNNNNTGG	1 cut(s)	459
VneI	GTGCAC	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	2 cut(s)	442, 654
XspI	CTAG	3 cut(s)	308, 323, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.