Rw6G001930

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007788
Physical Location & Seq
Reverse (-)
3164451 .. 3167295
2845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G001930.1

Sequence Viewer

Length: 486 bp
ATGGACTGCCAGTGTCTTGATGTTACAAAGGCATTTCCAGAGAGTAAAAGAGTTGGCAAGCTAGAGGCTATGTTGCTTGAGGCAAAGGGATCCTGGGCAGAGGCAGAGGCTGATCTAATATATATGGCGAAGGCTCAAGGCGATACTTCAGGGGCCATGGAATGGTTGAATAAATATCTTGAAATATTTATGGCCGATAATGATGCTTGGAGAGAGCTGGCAGAAATCTATGTCTCGTTGCAAATGTATCAAGCTGCGTTCTGCTATGAGGAGCTGATATTGGCACAACCTACTGTTCCCCACTACCACTTAGCTTATGTTGATAAAACGTACAGATCGACAACAAAGAAATACTACGCGTCTGTTATAGACTTGACTAGGGGCAAGAATATCAGAGCACTATTTGGTATTAACTTGTGTACTTCTGTCATTAGACAGCTTGCGAAAGGATGGAAGGAACAAGGAGACCCCGGTGCAATGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19

Protein Analysis

161

Amino Acids

18.27

Weight (kDa)

5.44

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_EMC2 PF22890 40 - 115 5.2e-33 EMC2 TPR-like repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 162
AccII CGCG 1 cut(s) 359
AclWI GGATC 2 cut(s) 84, 97
AcoI YGGCCR 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 2 cut(s) 332, 421
AfiI CCNNNNNNNGG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 2 cut(s) 169, 182
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 6 cut(s) 61, 217, 254, 274, 314, 439
AluI AGCT 6 cut(s) 61, 217, 254, 274, 314, 439
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 2 cut(s) 238, 459
AlwI GGATC 2 cut(s) 84, 97
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 2 cut(s) 153, 192
ApeKI GCWGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 471
BamHI GGATCC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 444
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 471
BcoDI GTCTC 2 cut(s) 238, 459
BfaI CTAG 2 cut(s) 62, 378
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 94, 471
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 91, 154
BmrFI CCNGG 2 cut(s) 94, 471
BmsI GCATC 1 cut(s) 193
BpuEI CTTGAG 2 cut(s) 98, 120
BpuMI CCSGG 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 459
BsaJI CCNNGG 3 cut(s) 93, 156, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 93, 156, 469
BseGI GGATG 1 cut(s) 455
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 483
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 2 cut(s) 155, 194
BsiHKAI GWGCWC 1 cut(s) 400
BsiSI CCGG 1 cut(s) 471
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 238, 459
BsnI GGCC 2 cut(s) 155, 194
Bso31I GGTCTC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 3 cut(s) 89, 112, 335
Bsp19I CCATGG 1 cut(s) 156
BspANI GGCC 2 cut(s) 155, 194
BspFNI CGCG 1 cut(s) 359
BspLI GGNNCC 2 cut(s) 91, 154
BspPI GGATC 2 cut(s) 84, 97
BspTNI GGTCTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 3 cut(s) 93, 156, 469
BssMI GATC 3 cut(s) 89, 112, 335
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 295
BstC8I GCNNGC 3 cut(s) 59, 219, 441
BstDEI CTNAG 1 cut(s) 310
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 455
BstFNI CGCG 1 cut(s) 359
BstKTI GATC 3 cut(s) 92, 115, 338
BstMAI GTCTC 2 cut(s) 238, 459
BstMBI GATC 3 cut(s) 89, 112, 335
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 92, 469
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 2 cut(s) 155, 194
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 455
BtsIMutI CAGTG 1 cut(s) 17
Cac8I GCNNGC 3 cut(s) 59, 219, 441
CaiI CAGNNNCTG 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 153
CseI GACGC 1 cut(s) 348
Csp6I GTAC 2 cut(s) 331, 420
CviAII CATG 1 cut(s) 157
CviQI GTAC 2 cut(s) 331, 420
DdeI CTNAG 1 cut(s) 310
DpnI GATC 3 cut(s) 91, 114, 337
DpnII GATC 3 cut(s) 89, 112, 335
EaeI YGGCCR 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 459
Eco57I CTGAAG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 160
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 462
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 2 cut(s) 62, 378
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 2 cut(s) 155, 194
HapII CCGG 1 cut(s) 471
HgaI GACGC 1 cut(s) 348
Hin1II CATG 1 cut(s) 160
HpaII CCGG 1 cut(s) 471
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 1 cut(s) 395
Hpy188III TCNNGA 3 cut(s) 17, 38, 179
Hpy8I GTNNAC 1 cut(s) 420
HpyAV CCTTC 2 cut(s) 124, 448
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 2 cut(s) 241, 476
HpyF3I CTNAG 1 cut(s) 310
HpySE526I ACGT 1 cut(s) 329
Hsp92II CATG 1 cut(s) 160
Kzo9I GATC 3 cut(s) 89, 112, 335
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 6 cut(s) 23, 51, 79, 106, 135, 203
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 193
MaeI CTAG 2 cut(s) 62, 378
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 22
MalI GATC 3 cut(s) 91, 114, 337
MboI GATC 3 cut(s) 89, 112, 335
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 400
MluI ACGCGT 1 cut(s) 357
MnlI CCTC 5 cut(s) 58, 73, 94, 100, 262
MseI TTAA 1 cut(s) 411
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 2 cut(s) 94, 471
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 359
NciI CCSGG 1 cut(s) 471
NcoI CCATGG 1 cut(s) 156
NdeII GATC 3 cut(s) 89, 112, 335
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 2 cut(s) 91, 154
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 91, 154
PspPI GGNCC 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 110
PsuI RGATCY 1 cut(s) 89
RsaI GTAC 2 cut(s) 332, 421
RsaNI GTAC 2 cut(s) 331, 420
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 3 cut(s) 89, 112, 335
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 2 cut(s) 94, 471
SduI GDGCHC 1 cut(s) 400
SetI ASST 8 cut(s) 63, 219, 256, 276, 292, 316, 332, 441
SfaNI GCATC 1 cut(s) 193
SmlI CTYRAG 2 cut(s) 77, 135
SmoI CTYRAG 2 cut(s) 77, 135
SspI AATATT 1 cut(s) 186
SspMI CTAG 2 cut(s) 62, 378
StyD4I CCNGG 2 cut(s) 92, 469
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 1 cut(s) 332
TaqI TCGA 1 cut(s) 338
TatI WGTACW 1 cut(s) 419
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 1 cut(s) 17
TseI GCWGC 1 cut(s) 254
TspRI CASTG 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 162
XspI CTAG 2 cut(s) 62, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.