Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002901.1

Orthogroup ID

OG0007788

Physical Location & Seq

Genomic Coordinates Reverse (-)

40221 .. 42870

Gene Structure 2650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002901.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atggtgagcaaaacggaggaggcgcaattgaacaggctcgagagccaggtcgataatggaggaggaggagcgtgggagtacctctgcctggtccgaaagctcaaggtgcggcgttccgagaaggttttgaagtacggcatgtcgatcttgaacgacctcagtaaacgatccaaatggactctatatgagcaggttgcacttgcagccatggactgccagtgtcttgatgtagcaaaggacctcatcaagcttttacgaaaggcatttccagagagtaaaagagttggcaagctagaggcgatgttgcttgaggcaaagggatcctgggcagaggcagagaaggcttattcaagccttttggaagatagtccacttgatcaagtagtacataagagaagggtagctatggcaaaggctcaaggcgatacttcaggggccattgaatggcttaataaatatcttgaaatatttatggccgataatgatgcttggagagagctggcagaaatctatgtctcgttgcaaatgtacaagcaagctgcgttctgctatgaggagctgatattagcacaacctactgttcccctctaccacttagcttatgctgatattctttacactcttggtggattagaaaacatacagacagcaaagaaatactacgcatcagttatagacttgactgggggcaagaatatcagagcattatttggtattagcttgtgtacttctgccattgcacagcttgcgaaaggaaggaacaaggaagacaaggagacctcagagctacagtcactggtagcaacagccttggagaaagactacaagcaaagagctccggacaagctttctctgcttactatagccttaaaaaacttgaaagtttcatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19

Protein Analysis

297

Amino Acids

33.29

Weight (kDa)

8.59

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04830 AT3G04830 AT5G28220
fragaria_vesca	FvH4_6g03340
malus_domestica	MD04G1221600.v1.1 MD12G1237600.v1.1
prunus_persica	Prupe.6G340800_v2.0.a1
pyrus_communis	pycom04g19600 pycom12g21850
rosa_chinensis	RchiOBHm_Chr3g0451841
rosa_laevigata	RLG00000002508 RLG00000015364 RLG00000025644
rosa_multiflora	Rmu_sc0002901.1_g000010 Rmu_sc0006510.1_g000013
rosa_roxburghii	Rroxscaffold_164G00436280 Rroxscaffold_6G00429010
rosa_rugosa	Rorug02G0636600
rosa_samantha	Rh3AG038400 Rh3BG039700 Rh3CG038100 Rh3DG038900
rosa_wichuraiana	Rw3G002850 Rw6G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	838
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	3 cut(s)	162, 315, 328
AcoI	YGGCCR	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	5 cut(s)	80, 134, 387, 530, 727
AfiI	CCNNNNNNNGG	2 cut(s)	88, 444
AgsI	TTSAA	7 cut(s)	31, 130, 151, 351, 443, 464, 880
AjnI	CCWGG	3 cut(s)	45, 87, 323
Alw21I	GWGCWC	1 cut(s)	838
Alw26I	GTCTC	2 cut(s)	520, 770
AlwI	GGATC	3 cut(s)	162, 315, 328
AlwNI	CAGNNNCTG	1 cut(s)	796
Ama87I	CYCGRG	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	838
AoxI	GGCC	2 cut(s)	435, 474
ApeKI	GCWGC	2 cut(s)	203, 539
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	3 cut(s)	91, 238, 435
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	2 cut(s)	91, 238
BamHI	GGATCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	838
BbsI	GAAGAC	1 cut(s)	774
Bbv12I	GWGCWC	1 cut(s)	838
BbvI	GCAGC	2 cut(s)	215, 526
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BciT130I	CCWGG	3 cut(s)	47, 89, 325
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	520, 770
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	2 cut(s)	788, 861
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	110, 204, 540
BlsI	GCNGC	3 cut(s)	111, 205, 541
Bme1390I	CCNGG	3 cut(s)	47, 89, 325
Bme18I	GGWCC	2 cut(s)	91, 238
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	3 cut(s)	91, 238, 435
BmiI	GGNNCC	2 cut(s)	322, 436
BmrFI	CCNGG	3 cut(s)	47, 89, 325
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	2 cut(s)	475, 674
BmuI	ACTGGG	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	774
BpuEI	CTTGAG	3 cut(s)	86, 329, 402
BsaI	GGTCTC	1 cut(s)	770
BsaJI	CCNNGG	3 cut(s)	207, 324, 810
BsaWI	WCCGGW	1 cut(s)	838
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 444
Bse1I	ACTGG	3 cut(s)	217, 688, 801
Bse3DI	GCAATG	1 cut(s)	735
BseAI	TCCGGA	1 cut(s)	838
BseBI	CCWGG	3 cut(s)	47, 89, 325
BseDI	CCNNGG	3 cut(s)	207, 324, 810
BseLI	CCNNNNNNNGG	2 cut(s)	88, 444
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	172, 795
BseNI	ACTGG	3 cut(s)	217, 688, 801
BseRI	GAGGAG	5 cut(s)	32, 75, 78, 81, 569
BseXI	GCAGC	2 cut(s)	215, 526
BshFI	GGCC	2 cut(s)	437, 476
BsiHKAI	GWGCWC	1 cut(s)	838
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	839
BslI	CCNNNNNNNGG	2 cut(s)	88, 444
BsmAI	GTCTC	2 cut(s)	520, 770
BsnI	GGCC	2 cut(s)	437, 476
Bso31I	GGTCTC	1 cut(s)	770
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	838
Bsp13I	TCCGGA	1 cut(s)	838
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	4 cut(s)	144, 167, 320, 376
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	437, 476
BspCNI	CTCAG	2 cut(s)	171, 794
BspEI	TCCGGA	1 cut(s)	838
BspLI	GGNNCC	2 cut(s)	322, 436
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	3 cut(s)	162, 315, 328
BspTNI	GGTCTC	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	735
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	3 cut(s)	217, 688, 801
BssECI	CCNNGG	3 cut(s)	207, 324, 810
BssMI	GATC	4 cut(s)	144, 167, 320, 376
BssT1I	CCWWGG	2 cut(s)	207, 810
Bst2UI	CCWGG	3 cut(s)	47, 89, 325
Bst4CI	ACNGT	2 cut(s)	580, 792
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	4 cut(s)	290, 501, 537, 747
BstDEI	CTNAG	3 cut(s)	158, 595, 781
BstDSI	CCRYGG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	4 cut(s)	147, 170, 323, 379
BstMAI	GTCTC	2 cut(s)	520, 770
BstMBI	GATC	4 cut(s)	144, 167, 320, 376
BstMWI	GCNNNNNNNGC	5 cut(s)	106, 203, 341, 746, 853
BstNI	CCWGG	3 cut(s)	47, 89, 325
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	3 cut(s)	45, 87, 323
BstSFI	CTRYAG	2 cut(s)	788, 861
BstV1I	GCAGC	2 cut(s)	215, 526
BstV2I	GAAGAC	1 cut(s)	774
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	437, 476
BtgI	CCRYGG	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	314
BtsIMutI	CAGTG	2 cut(s)	224, 794
BveI	ACCTGC	1 cut(s)	181
Cac8I	GCNNGC	4 cut(s)	290, 501, 537, 747
CaiI	CAGNNNCTG	1 cut(s)	796
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	91, 238, 435
Csp6I	GTAC	5 cut(s)	79, 133, 386, 529, 726
CviAII	CATG	2 cut(s)	139, 208
CviQI	GTAC	5 cut(s)	79, 133, 386, 529, 726
DdeI	CTNAG	3 cut(s)	158, 595, 781
DpnI	GATC	4 cut(s)	146, 169, 322, 378
DpnII	GATC	4 cut(s)	144, 167, 320, 376
EaeI	YGGCCR	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	836
Eco130I	CCWWGG	2 cut(s)	207, 810
Eco24I	GRGCYC	1 cut(s)	838
Eco31I	GGTCTC	1 cut(s)	770
Eco47I	GGWCC	2 cut(s)	91, 238
Eco53kI	GAGCTC	1 cut(s)	836
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	836
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	3 cut(s)	45, 87, 323
EcoT14I	CCWWGG	2 cut(s)	207, 810
EcoT38I	GRGCYC	1 cut(s)	838
ErhI	CCWWGG	2 cut(s)	207, 810
FaeI	CATG	2 cut(s)	142, 211
FatI	CATG	2 cut(s)	138, 207
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	110, 204, 540
FriOI	GRGCYC	1 cut(s)	838
Fsp4HI	GCNGC	3 cut(s)	110, 204, 540
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	110, 204, 540
HaeIII	GGCC	2 cut(s)	437, 476
HapII	CCGG	1 cut(s)	839
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	142, 211
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	2 cut(s)	248, 845
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	839
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	164, 371, 726
Hpy188I	TCNGA	4 cut(s)	95, 118, 701, 784
Hpy188III	TCNNGA	6 cut(s)	40, 148, 224, 269, 461, 839
Hpy8I	GTNNAC	3 cut(s)	164, 371, 726
HpyAV	CCTTC	4 cut(s)	115, 334, 390, 750
HpyCH4III	ACNGT	2 cut(s)	580, 792
HpyCH4V	TGCA	4 cut(s)	197, 203, 523, 740
HpyF10VI	GCNNNNNNNGC	5 cut(s)	106, 203, 341, 746, 853
HpyF3I	CTNAG	3 cut(s)	158, 595, 781
Hsp92II	CATG	2 cut(s)	142, 211
HspAI	GCGC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	838
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	144, 167, 320, 376
LmnI	GCTCC	3 cut(s)	68, 556, 841
Lsp1109I	GCAGC	2 cut(s)	215, 526
LweI	GCATC	2 cut(s)	475, 674
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	792
MalI	GATC	4 cut(s)	146, 169, 322, 378
MboI	GATC	4 cut(s)	144, 167, 320, 376
MboII	GAAGA	2 cut(s)	374, 779
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	838
MluCI	AATT	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	172
MroI	TCCGGA	1 cut(s)	838
MseI	TTAA	2 cut(s)	450, 869
MspI	CCGG	1 cut(s)	839
MspR9I	CCNGG	3 cut(s)	47, 89, 325
MunI	CAATTG	1 cut(s)	26
MvaI	CCWGG	3 cut(s)	47, 89, 325
MwoI	GCNNNNNNNGC	5 cut(s)	106, 203, 341, 746, 853
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	4 cut(s)	144, 167, 320, 376
NlaIII	CATG	2 cut(s)	142, 211
NlaIV	GGNNCC	2 cut(s)	322, 436
NmuCI	GTSAC	1 cut(s)	792
NspI	RCATGY	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	444
PkrI	GCNGC	3 cut(s)	111, 205, 541
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	838
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	45, 87, 323
PspGI	CCWGG	3 cut(s)	45, 87, 323
PspN4I	GGNNCC	2 cut(s)	322, 436
PspPI	GGNCC	3 cut(s)	91, 238, 435
PspPPI	RGGWCCY	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	320
RsaI	GTAC	5 cut(s)	80, 134, 387, 530, 727
RsaNI	GTAC	5 cut(s)	79, 133, 386, 529, 726
SacI	GAGCTC	1 cut(s)	838
SaqAI	TTAA	2 cut(s)	450, 869
SatI	GCNGC	3 cut(s)	110, 204, 540
Sau3AI	GATC	4 cut(s)	144, 167, 320, 376
Sau96I	GGNCC	3 cut(s)	91, 238, 435
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	3 cut(s)	47, 89, 325
SduI	GDGCHC	1 cut(s)	838
SfaNI	GCATC	2 cut(s)	475, 674
SfcI	CTRYAG	2 cut(s)	788, 861
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	2 cut(s)	91, 238
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	4 cut(s)	38, 101, 308, 417
SmoI	CTYRAG	4 cut(s)	38, 101, 308, 417
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	109
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	838
StyD4I	CCNGG	3 cut(s)	45, 87, 323
StyI	CCWWGG	2 cut(s)	207, 810
TaaI	ACNGT	2 cut(s)	580, 792
TaqI	TCGA	3 cut(s)	39, 51, 143
TasI	AATT	1 cut(s)	26
TatI	WGTACW	3 cut(s)	385, 528, 725
TauI	GCSGC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	450, 869
Tru9I	TTAA	2 cut(s)	450, 869
TscAI	CASTG	2 cut(s)	224, 801
TseFI	GTSAC	1 cut(s)	792
TseI	GCWGC	2 cut(s)	203, 539
Tsp45I	GTSAC	1 cut(s)	792
TspDTI	ATGAA	1 cut(s)	876
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	224, 801
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	2 cut(s)	91, 238
XceI	RCATGY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	38
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.