Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007788

Physical Location & Seq

Genomic Coordinates Reverse (-)

22968253 .. 22971099

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21850.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTGAGCAAAACGGAAGAAACCCAATTGAACAGACTTGAGAACCAGGTCGATAATGGAGGAGGAGGGGCCTGGGAGTACCTCTGCTTGGTCCGAAAGCTCAAGGTCCGCCGCTCCGAGAAGGTCTTGAAGTATGGCCTCTCGATCTTGAACGACCTCAAAAAAAGATCCAGTCTCGGCACGGAAGAGTGGACTTTATATGAGCAAGTGGCAATTGCAGCCATGGACTGCCAGTCTCTTAATGTTGCAAAGGACTGCATTAGGCTTTTACGTAAGGCATTTCCAGAAAGTAAAAGAGTTGGTAGGCTAGAGGCTATGTTGCTAGAGGCAAAGGGATCTTGGGCAGAGGCAGAAAAGGCTTACTCAAGCTTTTTGGAGGAAAATCCACTCGATCAAGTGATACATAAGAGAAGAGTGGCTATGGCAAAGGCACAAGGAGACACTTCAGGGGCCATTGAGTGGCTTAATAAATATCTGGAAATATTTATGGCTGATCATGATGCATGGAGAGAGCTGGCTGAAATCTATGTTTCGTTGCAGATGTACAAGCAAGCTGCGTTCTGCTATGAGGAGCTGATATTATCGCAACCTACTGTTCCTCTTCACCACTTGGCTTATGCTGATGTGCTTTACACTCTTGGTGGATTGGAAAACCTTCAGACCGCAAAAAAATACTATGCATCTGTTATAGACTTGACCGGGGGCAAGAATGTGAGAGCACTTTTTGGTATTAACCTGTGCACTTCTGCCATCGGACAGCTTGCAAAAGGAAGGAACAAGGAAGACAAAGAGAGCTTAGAGCTACAATCACTGGCAGCAACAGCGTTGGAGAAACACTACAAGCAGAGAGCTCCTGACAAACTTTCCCTGCTTACGACCGCTTTGAAAAGCTTGAAAGTTTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19

Protein Analysis

303

Amino Acids

33.94

Weight (kDa)

8.61

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04830 AT3G04830 AT5G28220
fragaria_vesca	FvH4_6g03340
malus_domestica	MD04G1221600.v1.1 MD12G1237600.v1.1
prunus_persica	Prupe.6G340800_v2.0.a1
pyrus_communis	pycom04g19600 pycom12g21850
rosa_chinensis	RchiOBHm_Chr3g0451841
rosa_laevigata	RLG00000002508 RLG00000015364 RLG00000025644
rosa_multiflora	Rmu_sc0002901.1_g000010 Rmu_sc0006510.1_g000013
rosa_roxburghii	Rroxscaffold_164G00436280 Rroxscaffold_6G00429010
rosa_rugosa	Rorug02G0636600
rosa_samantha	Rh3AG038400 Rh3BG039700 Rh3CG038100 Rh3DG038900
rosa_wichuraiana	Rw3G002850 Rw6G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	459
AccBSI	CCGCTC	1 cut(s)	114
AciI	CCGC	4 cut(s)	109, 112, 663, 879
AclWI	GGATC	2 cut(s)	162, 343
AcuI	CTGAAG	2 cut(s)	429, 641
AfaI	GTAC	2 cut(s)	80, 545
AfiI	CCNNNNNNNGG	2 cut(s)	88, 459
AgsI	TTSAA	5 cut(s)	31, 130, 151, 886, 895
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	2 cut(s)	45, 71
Alw21I	GWGCWC	3 cut(s)	721, 743, 853
Alw26I	GTCTC	3 cut(s)	179, 240, 432
Alw44I	GTGCAC	1 cut(s)	739
AlwI	GGATC	2 cut(s)	162, 343
AoxI	GGCC	3 cut(s)	69, 136, 450
ApaLI	GTGCAC	1 cut(s)	739
ApeKI	GCWGC	3 cut(s)	218, 554, 815
Asp700I	GAANNNNTTC	1 cut(s)	654
AspS9I	GGNCC	4 cut(s)	69, 91, 106, 450
AsuC2I	CCSGG	1 cut(s)	700
AsuHPI	GGTGA	2 cut(s)	16, 596
AvaII	GGWCC	2 cut(s)	91, 106
BaeGI	GKGCMC	1 cut(s)	743
BanII	GRGCYC	1 cut(s)	853
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	3 cut(s)	721, 743, 853
BbvI	GCAGC	3 cut(s)	230, 541, 827
BccI	CCATC	1 cut(s)	758
BciT130I	CCWGG	2 cut(s)	47, 73
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	700
BcoDI	GTCTC	3 cut(s)	179, 240, 432
BfaI	CTAG	2 cut(s)	308, 323
BisI	GCNGC	4 cut(s)	112, 219, 555, 816
BlsI	GCNGC	4 cut(s)	113, 220, 556, 817
Bme1390I	CCNGG	3 cut(s)	47, 73, 700
Bme18I	GGWCC	2 cut(s)	91, 106
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	4 cut(s)	69, 91, 106, 450
BmiI	GGNNCC	2 cut(s)	70, 451
BmrFI	CCNGG	3 cut(s)	47, 73, 700
BmsI	GCATC	2 cut(s)	490, 689
BpiI	GAAGAC	1 cut(s)	789
BpuEI	CTTGAG	3 cut(s)	59, 86, 349
BpuMI	CCSGG	1 cut(s)	700
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	72, 222, 699
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 459
Bse1I	ACTGG	3 cut(s)	171, 232, 816
BseBI	CCWGG	2 cut(s)	47, 73
BseDI	CCNNGG	3 cut(s)	72, 222, 699
BseLI	CCNNNNNNNGG	2 cut(s)	88, 459
BseNI	ACTGG	3 cut(s)	171, 232, 816
BseRI	GAGGAG	3 cut(s)	75, 78, 584
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	3 cut(s)	230, 541, 827
Bsh1285I	CGRYCG	1 cut(s)	879
BshFI	GGCC	3 cut(s)	71, 138, 452
BsiEI	CGRYCG	1 cut(s)	879
BsiHKAI	GWGCWC	3 cut(s)	721, 743, 853
BsiSI	CCGG	1 cut(s)	699
BslI	CCNNNNNNNGG	2 cut(s)	88, 459
BsmAI	GTCTC	3 cut(s)	179, 240, 432
BsnI	GGCC	3 cut(s)	71, 138, 452
Bsp1286I	GDGCHC	3 cut(s)	721, 743, 853
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	5 cut(s)	144, 167, 335, 391, 493
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	4 cut(s)	109, 112, 663, 879
BspANI	GGCC	3 cut(s)	71, 138, 452
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	70, 451
BspPI	GGATC	2 cut(s)	162, 343
BsrBI	CCGCTC	1 cut(s)	114
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	3 cut(s)	171, 232, 816
BssECI	CCNNGG	3 cut(s)	72, 222, 699
BssMI	GATC	5 cut(s)	144, 167, 335, 391, 493
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	47, 73
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	3 cut(s)	180, 406, 606
BstAUI	TGTACA	1 cut(s)	543
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	516, 552, 762
BstDEI	CTNAG	1 cut(s)	796
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	5 cut(s)	147, 170, 338, 394, 496
BstMAI	GTCTC	3 cut(s)	179, 240, 432
BstMBI	GATC	5 cut(s)	144, 167, 335, 391, 493
BstMCI	CGRYCG	1 cut(s)	879
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 356, 821
BstNI	CCWGG	2 cut(s)	47, 73
BstSCI	CCNGG	3 cut(s)	45, 71, 698
BstSLI	GKGCMC	1 cut(s)	743
BstSNI	TACGTA	1 cut(s)	272
BstV1I	GCAGC	3 cut(s)	230, 541, 827
BstV2I	GAAGAC	1 cut(s)	789
BstX2I	RGATCY	2 cut(s)	167, 335
BstYI	RGATCY	2 cut(s)	167, 335
BsuRI	GGCC	3 cut(s)	71, 138, 452
BtgI	CCRYGG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	809
Cac8I	GCNNGC	3 cut(s)	516, 552, 762
CciI	TCATGA	1 cut(s)	496
Cfr13I	GGNCC	4 cut(s)	69, 91, 106, 450
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	79, 544
CviAII	CATG	3 cut(s)	223, 497, 504
CviQI	GTAC	2 cut(s)	79, 544
DdeI	CTNAG	1 cut(s)	796
DpnI	GATC	5 cut(s)	146, 169, 337, 393, 495
DpnII	GATC	5 cut(s)	144, 167, 335, 391, 493
DriI	GACNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	3 cut(s)	180, 406, 606
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	3 cut(s)	180, 406, 606
EciI	GGCGGA	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	851
Eco105I	TACGTA	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	853
Eco47I	GGWCC	2 cut(s)	91, 106
Eco53kI	GAGCTC	1 cut(s)	851
Eco57I	CTGAAG	2 cut(s)	429, 641
EcoICRI	GAGCTC	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	45, 71
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	2 cut(s)	505, 682
EcoT38I	GRGCYC	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	226, 500, 507
FatI	CATG	3 cut(s)	222, 496, 503
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	4 cut(s)	112, 219, 555, 816
FriOI	GRGCYC	1 cut(s)	853
Fsp4HI	GCNGC	4 cut(s)	112, 219, 555, 816
FspBI	CTAG	2 cut(s)	308, 323
GluI	GCNGC	4 cut(s)	112, 219, 555, 816
HaeIII	GGCC	3 cut(s)	71, 138, 452
HapII	CCGG	1 cut(s)	699
Hin1II	CATG	3 cut(s)	226, 500, 507
HindIII	AAGCTT	2 cut(s)	367, 889
HpaII	CCGG	1 cut(s)	699
HphI	GGTGA	2 cut(s)	16, 596
Hpy166II	GTNNAC	2 cut(s)	192, 741
Hpy188I	TCNGA	4 cut(s)	95, 118, 660, 755
Hpy188III	TCNNGA	7 cut(s)	127, 142, 148, 284, 476, 497, 854
Hpy8I	GTNNAC	2 cut(s)	192, 741
HpyAV	CCTTC	3 cut(s)	115, 665, 765
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	8 cut(s)	218, 248, 258, 503, 538, 680, 741, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 356, 821
HpyF3I	CTNAG	1 cut(s)	796
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	3 cut(s)	226, 500, 507
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	5 cut(s)	144, 167, 335, 391, 493
LmnI	GCTCC	3 cut(s)	119, 571, 856
Lsp1109I	GCAGC	3 cut(s)	230, 541, 827
LweI	GCATC	2 cut(s)	490, 689
MabI	ACCWGGT	1 cut(s)	45
MaeI	CTAG	2 cut(s)	308, 323
MaeII	ACGT	1 cut(s)	271
MalI	GATC	5 cut(s)	146, 169, 337, 393, 495
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	5 cut(s)	144, 167, 335, 391, 493
MboII	GAAGA	5 cut(s)	29, 197, 423, 593, 794
MfeI	CAATTG	2 cut(s)	26, 213
MflI	RGATCY	2 cut(s)	167, 335
MhlI	GDGCHC	3 cut(s)	721, 743, 853
MluCI	AATT	2 cut(s)	26, 213
MmeI	TCCRAC	1 cut(s)	807
Mph1103I	ATGCAT	2 cut(s)	505, 682
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	3 cut(s)	240, 465, 732
MspI	CCGG	1 cut(s)	699
MspR9I	CCNGG	3 cut(s)	47, 73, 700
MunI	CAATTG	2 cut(s)	26, 213
MvaI	CCWGG	2 cut(s)	47, 73
MwoI	GCNNNNNNNGC	3 cut(s)	218, 356, 821
NciI	CCSGG	1 cut(s)	700
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	5 cut(s)	144, 167, 335, 391, 493
NlaIII	CATG	3 cut(s)	226, 500, 507
NlaIV	GGNNCC	2 cut(s)	70, 451
NmeAIII	GCCGAG	1 cut(s)	156
NsiI	ATGCAT	2 cut(s)	505, 682
PagI	TCATGA	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	654
PflMI	CCANNNNNTGG	1 cut(s)	459
PkrI	GCNGC	4 cut(s)	113, 220, 556, 817
Ppu21I	YACGTR	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	853
Psp6I	CCWGG	2 cut(s)	45, 71
PspGI	CCWGG	2 cut(s)	45, 71
PspN4I	GGNNCC	2 cut(s)	70, 451
PspPI	GGNCC	4 cut(s)	69, 91, 106, 450
PsuI	RGATCY	2 cut(s)	167, 335
RsaI	GTAC	2 cut(s)	80, 545
RsaNI	GTAC	2 cut(s)	79, 544
SacI	GAGCTC	1 cut(s)	853
SaqAI	TTAA	3 cut(s)	240, 465, 732
SatI	GCNGC	4 cut(s)	112, 219, 555, 816
Sau3AI	GATC	5 cut(s)	144, 167, 335, 391, 493
Sau96I	GGNCC	4 cut(s)	69, 91, 106, 450
ScrFI	CCNGG	3 cut(s)	47, 73, 700
SduI	GDGCHC	3 cut(s)	721, 743, 853
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	2 cut(s)	490, 689
SinI	GGWCC	2 cut(s)	91, 106
SmlI	CTYRAG	3 cut(s)	38, 101, 364
SmoI	CTYRAG	3 cut(s)	38, 101, 364
SnaBI	TACGTA	1 cut(s)	272
Sse9I	AATT	2 cut(s)	26, 213
SsiI	CCGC	4 cut(s)	109, 112, 663, 879
SspI	AATATT	1 cut(s)	483
SspMI	CTAG	2 cut(s)	308, 323
SstI	GAGCTC	1 cut(s)	853
StyD4I	CCNGG	3 cut(s)	45, 71, 698
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	595
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	3 cut(s)	51, 143, 390
TasI	AATT	2 cut(s)	26, 213
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	1 cut(s)	114
Tru1I	TTAA	3 cut(s)	240, 465, 732
Tru9I	TTAA	3 cut(s)	240, 465, 732
TscAI	CASTG	1 cut(s)	816
TseI	GCWGC	3 cut(s)	218, 554, 815
TspDTI	ATGAA	1 cut(s)	891
TspGWI	ACGGA	2 cut(s)	29, 197
TspRI	CASTG	1 cut(s)	816
Van91I	CCANNNNNTGG	1 cut(s)	459
VneI	GTGCAC	1 cut(s)	739
VpaK11BI	GGWCC	2 cut(s)	91, 106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	2 cut(s)	308, 323
Zsp2I	ATGCAT	2 cut(s)	505, 682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.