RLG00000002508

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007788
Physical Location & Seq
Forward (+)
35421851 .. 35425161
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002508

Sequence Viewer

Length: 738 bp
ATGTTAGAGTGGTGGTGGCTCTCGTCTCTCGAATCACCTACGGCTGCGAGACTGCTACCTCCGCCGCCGCCACCAAGCCCAACTTGGTTTTGGATACACACACAAGCAATGTATGTATATATTTTCCAACGAGAAGACGAACGTGAGCTTCCCTCCGACGTATCGTCCTCAGTGGCAGAATGGACTCTATATGAGCAGGTTGTACTTACAGCCATGGACTGCCAGTGTCTTGATGTTGCAAAGGACCTCATCAAGCTTTTACGAAAGGCATTTCCAGAGAGTAAAAGAGTTGGCACGCTAGAGGCTATGTTGCTTGAGGCAAAGGGATCCTGGGCAGATGCAGAGAAGGCTTATCTAATATCTATGGCAAAGACTCAAGGCGATACCTTAGGGGCCATTGAATGGCTTAATAAATATCTTGAAATATTTATGGCTGATAATGATGCTTGGAAAGAGCTGGCAAAAATCTATGTCTCGTTGCAAATGTACAAGCAAGCTGCGTTCTGCTATGAGGAGTTGATATTGGCACAACCTAATGTTCCCCTCAACCACTTAGCTTATGCTAATATTCTTTACACTCTTGGTGGATTAGAAAACATACAGATGGCAAAGAAATACTACGCATCTGTTATAGACTTGACTGGGGGCAAGAATATCAGAGCACTATTTGGTATTAACTTGCTTGCGAAAGGAAAGAACAAGGAAGACAAGGAGACCTCGGAGCAATGTTGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19

Protein Analysis

246

Amino Acids

27.86

Weight (kDa)

5.03

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_EMC2 PF22890 97 - 190 1.8e-36 EMC2 TPR-like repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 187
AccB7I CCANNNNNTGG 1 cut(s) 402
AciI CCGC 3 cut(s) 62, 65, 68
AclWI GGATC 2 cut(s) 321, 334
AfaI GTAC 2 cut(s) 204, 488
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 2 cut(s) 401, 422
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 329
AluBI AGCT 5 cut(s) 148, 256, 457, 497, 557
AluI AGCT 5 cut(s) 148, 256, 457, 497, 557
Alw21I GWGCWC 1 cut(s) 664
Alw26I GTCTC 4 cut(s) 30, 43, 478, 707
AlwI GGATC 2 cut(s) 321, 334
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 2 cut(s) 44, 497
AspS9I GGNCC 2 cut(s) 244, 393
AsuHPI GGTGA 1 cut(s) 27
AvaII GGWCC 1 cut(s) 244
AxyI CCTNAGG 1 cut(s) 388
BamHI GGATCC 1 cut(s) 326
BbsI GAAGAC 2 cut(s) 141, 711
Bbv12I GWGCWC 1 cut(s) 664
BbvI GCAGC 2 cut(s) 31, 484
BccI CCATC 1 cut(s) 598
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 331
BciVI GTATCC 1 cut(s) 87
BcoDI GTCTC 4 cut(s) 30, 43, 478, 707
BfaI CTAG 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 187
BfuI GTATCC 1 cut(s) 87
BisI GCNGC 4 cut(s) 45, 65, 68, 498
BlsI GCNGC 4 cut(s) 46, 66, 69, 499
Bme1390I CCNGG 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 244
BmeRI GACNNNNNGTC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 244, 393
BmiI GGNNCC 2 cut(s) 328, 394
BmrFI CCNGG 1 cut(s) 331
BmrI ACTGGG 1 cut(s) 651
BmsI GCATC 3 cut(s) 328, 433, 632
BmuI ACTGGG 1 cut(s) 651
BpiI GAAGAC 2 cut(s) 141, 711
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BpuEI CTTGAG 2 cut(s) 335, 360
BsaI GGTCTC 1 cut(s) 707
BsaJI CCNNGG 3 cut(s) 213, 330, 717
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 2 cut(s) 223, 646
Bse21I CCTNAGG 1 cut(s) 388
Bse3DI GCAATG 2 cut(s) 114, 731
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 3 cut(s) 213, 330, 717
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 2 cut(s) 114, 731
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 223, 646
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 31, 484
BshFI GGCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 664
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 4 cut(s) 30, 43, 478, 707
BsmBI CGTCTC 1 cut(s) 30
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 1 cut(s) 707
Bsp1286I GDGCHC 1 cut(s) 664
Bsp1407I TGTACA 1 cut(s) 486
Bsp143I GATC 1 cut(s) 326
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 3 cut(s) 62, 65, 68
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 182
BspLI GGNNCC 2 cut(s) 328, 394
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 2 cut(s) 321, 334
BspTNI GGTCTC 1 cut(s) 707
BsrDI GCAATG 2 cut(s) 114, 731
BsrGI TGTACA 1 cut(s) 486
BsrI ACTGG 2 cut(s) 223, 646
BssECI CCNNGG 3 cut(s) 213, 330, 717
BssMI GATC 1 cut(s) 326
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 331
BstAUI TGTACA 1 cut(s) 486
BstC8I GCNNGC 4 cut(s) 296, 459, 495, 684
BstDEI CTNAG 3 cut(s) 169, 388, 553
BstDSI CCRYGG 1 cut(s) 213
BstKTI GATC 1 cut(s) 329
BstMAI GTCTC 4 cut(s) 30, 43, 478, 707
BstMBI GATC 1 cut(s) 326
BstMWI GCNNNNNNNGC 2 cut(s) 61, 347
BstNI CCWGG 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 31, 484
BstV2I GAAGAC 2 cut(s) 141, 711
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
Bsu36I CCTNAGG 1 cut(s) 388
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 177, 230
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 4 cut(s) 296, 459, 495, 684
Cfr13I GGNCC 2 cut(s) 244, 393
Csp6I GTAC 2 cut(s) 203, 487
CviAII CATG 1 cut(s) 214
CviQI GTAC 2 cut(s) 203, 487
DdeI CTNAG 3 cut(s) 169, 388, 553
DpnI GATC 1 cut(s) 328
DpnII GATC 1 cut(s) 326
DriI GACNNNNNGTC 1 cut(s) 163
Eam1105I GACNNNNNGTC 1 cut(s) 163
EciI GGCGGA 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 707
Eco47I GGWCC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 1 cut(s) 217
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FatI CATG 1 cut(s) 213
Fnu4HI GCNGC 4 cut(s) 45, 65, 68, 498
Fsp4HI GCNGC 4 cut(s) 45, 65, 68, 498
FspBI CTAG 1 cut(s) 299
GluI GCNGC 4 cut(s) 45, 65, 68, 498
HaeIII GGCC 1 cut(s) 395
Hin1II CATG 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 3 cut(s) 32, 184, 373
HphI GGTGA 1 cut(s) 27
Hpy188I TCNGA 3 cut(s) 157, 659, 721
Hpy188III TCNNGA 4 cut(s) 29, 230, 275, 419
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 340
HpyCH4IV ACGT 2 cut(s) 142, 159
HpyCH4V TGCA 3 cut(s) 239, 341, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 347
HpyF3I CTNAG 3 cut(s) 169, 388, 553
HpySE526I ACGT 2 cut(s) 142, 159
Hsp92II CATG 1 cut(s) 217
Kzo9I GATC 1 cut(s) 326
LmnI GCTCC 1 cut(s) 721
LpnPI CCDG 7 cut(s) 182, 236, 288, 316, 343, 443, 627
Lsp1109I GCAGC 2 cut(s) 31, 484
LweI GCATC 3 cut(s) 328, 433, 632
MaeI CTAG 1 cut(s) 299
MaeII ACGT 2 cut(s) 142, 159
MalI GATC 1 cut(s) 328
MboI GATC 1 cut(s) 326
MboII GAAGA 2 cut(s) 146, 716
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 664
MlyI GAGTC 2 cut(s) 178, 367
MmeI TCCRAC 2 cut(s) 151, 180
MnlI CCTC 9 cut(s) 69, 163, 178, 257, 295, 310, 505, 554, 727
MseI TTAA 2 cut(s) 408, 675
MslI CAYNNNNRTG 1 cut(s) 602
MspR9I CCNGG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 331
MwoI GCNNNNNNNGC 2 cut(s) 61, 347
NcoI CCATGG 1 cut(s) 213
NdeII GATC 1 cut(s) 326
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 2 cut(s) 328, 394
PfeI GAWTC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 402
PkrI GCNGC 4 cut(s) 46, 66, 69, 499
PleI GAGTC 2 cut(s) 178, 367
PpsI GAGTC 2 cut(s) 178, 367
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 2 cut(s) 328, 394
PspPI GGNCC 2 cut(s) 244, 393
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 2 cut(s) 204, 488
RsaNI GTAC 2 cut(s) 203, 487
RseI CAYNNNNRTG 1 cut(s) 602
SaqAI TTAA 2 cut(s) 408, 675
SatI GCNGC 4 cut(s) 45, 65, 68, 498
Sau3AI GATC 1 cut(s) 326
Sau96I GGNCC 2 cut(s) 244, 393
SchI GAGTC 2 cut(s) 178, 367
ScrFI CCNGG 1 cut(s) 331
SduI GDGCHC 1 cut(s) 664
SfaNI GCATC 3 cut(s) 328, 433, 632
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 2 cut(s) 314, 375
SmoI CTYRAG 2 cut(s) 314, 375
SsiI CCGC 3 cut(s) 62, 65, 68
SspI AATATT 2 cut(s) 426, 568
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 213
TaiI ACGT 2 cut(s) 145, 162
TaqI TCGA 1 cut(s) 30
TatI WGTACW 2 cut(s) 202, 486
TauI GCSGC 2 cut(s) 67, 70
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 2 cut(s) 408, 675
Tru9I TTAA 2 cut(s) 408, 675
TscAI CASTG 2 cut(s) 177, 230
TseI GCWGC 2 cut(s) 44, 497
TspRI CASTG 2 cut(s) 177, 230
Van91I CCANNNNNTGG 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 2 cut(s) 81, 87
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.