Rmu_sc0006510.1_g000013

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006510.1
OG0007788
Physical Location & Seq
Reverse (-)
59670 .. 61399
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006510.1_g000013.1.cds

Sequence Viewer

Length: 660 bp
atggacctcatcaagcttttacgaaaggcatttccagagagtaaaagagttggcaagctagaggcgatgttgcttgaggcaaagggatcctgggcagaggcagagaaggcttattcaagccttttggaagatagtccacttgatcaagtagtacataagagaagggtagctatggcaaaggctcaaggcgatacttcaggggccattgaatggcttaataaatatcttgaaatatttatggccgataatgatgcttggagagagctggcagaaatctatgtctcgttgcaaatgtacaagcaagctgcgttctgctatgaggagctgatattagcacaacctactgttcccctctaccacttagcttatgctgatattctttacactcttggtggattagaaaacatacagacagcaaagaaatactacgcatcagttatagacttgactgggggcaaaaatatcagagcattatttggtattagcttgtgtacttctgccattgcacagcttgcgaaaggaaggaacaaggaagacaaggagacctcagagctacagtcactggtagcaacagccttggagaaagactacaagcaaagagctccggacaagctttctctgcttactatagccttaaaaaacttgaaagtttcatcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19

Protein Analysis

219

Amino Acids

24.47

Weight (kDa)

7.66

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 210
AccIII TCCGGA 1 cut(s) 604
AclWI GGATC 2 cut(s) 81, 94
AcoI YGGCCR 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 3 cut(s) 153, 296, 493
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 4 cut(s) 117, 209, 230, 646
AjnI CCWGG 1 cut(s) 89
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 2 cut(s) 286, 536
AlwI GGATC 2 cut(s) 81, 94
AlwNI CAGNNNCTG 1 cut(s) 562
Aor13HI TCCGGA 1 cut(s) 604
AoxI GGCC 2 cut(s) 201, 240
ApeKI GCWGC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 4, 201
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 604
BbsI GAAGAC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 1 cut(s) 91
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 286, 536
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 2 cut(s) 554, 627
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 201
BmiI GGNNCC 2 cut(s) 88, 202
BmrFI CCNGG 1 cut(s) 91
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 2 cut(s) 241, 440
BmuI ACTGGG 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 540
BpuEI CTTGAG 2 cut(s) 95, 168
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 2 cut(s) 90, 576
BsaWI WCCGGW 1 cut(s) 604
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 454, 567
Bse3DI GCAATG 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 604
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 90, 576
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 1 cut(s) 561
BseNI ACTGG 2 cut(s) 454, 567
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 1 cut(s) 292
BshFI GGCC 2 cut(s) 203, 242
BsiHKAI GWGCWC 1 cut(s) 604
BsiSI CCGG 1 cut(s) 605
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 286, 536
BsnI GGCC 2 cut(s) 203, 242
Bso31I GGTCTC 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 604
Bsp13I TCCGGA 1 cut(s) 604
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 2 cut(s) 86, 142
BspANI GGCC 2 cut(s) 203, 242
BspCNI CTCAG 1 cut(s) 560
BspEI TCCGGA 1 cut(s) 604
BspLI GGNNCC 2 cut(s) 88, 202
BspPI GGATC 2 cut(s) 81, 94
BspTNI GGTCTC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 501
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 2 cut(s) 454, 567
BssECI CCNNGG 2 cut(s) 90, 576
BssMI GATC 2 cut(s) 86, 142
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 2 cut(s) 346, 558
BstAPI GCANNNNNTGC 1 cut(s) 512
BstAUI TGTACA 1 cut(s) 294
BstC8I GCNNGC 4 cut(s) 56, 267, 303, 513
BstDEI CTNAG 2 cut(s) 361, 547
BstKTI GATC 2 cut(s) 89, 145
BstMAI GTCTC 2 cut(s) 286, 536
BstMBI GATC 2 cut(s) 86, 142
BstMWI GCNNNNNNNGC 3 cut(s) 107, 512, 619
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 2 cut(s) 554, 627
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BsuRI GGCC 2 cut(s) 203, 242
BtgZI GCGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 560
Cac8I GCNNGC 4 cut(s) 56, 267, 303, 513
CaiI CAGNNNCTG 1 cut(s) 562
Cfr13I GGNCC 2 cut(s) 4, 201
Csp6I GTAC 3 cut(s) 152, 295, 492
CviQI GTAC 3 cut(s) 152, 295, 492
DdeI CTNAG 2 cut(s) 361, 547
DpnI GATC 2 cut(s) 88, 144
DpnII GATC 2 cut(s) 86, 142
EaeI YGGCCR 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 576
Eco24I GRGCYC 1 cut(s) 604
Eco31I GGTCTC 1 cut(s) 536
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 602
Eco57I CTGAAG 1 cut(s) 180
EcoICRI GAGCTC 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 576
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 306
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 2 cut(s) 203, 242
HapII CCGG 1 cut(s) 605
HindIII AAGCTT 2 cut(s) 14, 611
HpaII CCGG 1 cut(s) 605
Hpy166II GTNNAC 2 cut(s) 137, 492
Hpy188I TCNGA 2 cut(s) 467, 550
Hpy188III TCNNGA 3 cut(s) 35, 227, 605
Hpy8I GTNNAC 2 cut(s) 137, 492
HpyAV CCTTC 3 cut(s) 100, 156, 516
HpyCH4III ACNGT 2 cut(s) 346, 558
HpyCH4V TGCA 2 cut(s) 289, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 512, 619
HpyF3I CTNAG 2 cut(s) 361, 547
Kpn2I TCCGGA 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 2 cut(s) 86, 142
LmnI GCTCC 2 cut(s) 322, 607
LpnPI CCDG 8 cut(s) 48, 76, 103, 183, 251, 435, 548, 618
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 2 cut(s) 241, 440
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 558
MalI GATC 2 cut(s) 88, 144
MboI GATC 2 cut(s) 86, 142
MboII GAAGA 2 cut(s) 140, 545
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 604
MnlI CCTC 7 cut(s) 17, 55, 70, 91, 313, 362, 556
MroI TCCGGA 1 cut(s) 604
MseI TTAA 2 cut(s) 216, 635
MspI CCGG 1 cut(s) 605
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 3 cut(s) 107, 512, 619
NdeII GATC 2 cut(s) 86, 142
NlaIV GGNNCC 2 cut(s) 88, 202
NmuCI GTSAC 1 cut(s) 558
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 88, 202
PspPI GGNCC 2 cut(s) 4, 201
PstNI CAGNNNCTG 1 cut(s) 562
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 3 cut(s) 153, 296, 493
RsaNI GTAC 3 cut(s) 152, 295, 492
SacI GAGCTC 1 cut(s) 604
SaqAI TTAA 2 cut(s) 216, 635
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 2 cut(s) 86, 142
Sau96I GGNCC 2 cut(s) 4, 201
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 2 cut(s) 241, 440
SfcI CTRYAG 2 cut(s) 554, 627
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 2 cut(s) 74, 183
SmoI CTYRAG 2 cut(s) 74, 183
SspI AATATT 1 cut(s) 234
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 1 cut(s) 604
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 346, 558
TatI WGTACW 3 cut(s) 151, 294, 491
Tru1I TTAA 2 cut(s) 216, 635
Tru9I TTAA 2 cut(s) 216, 635
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 1 cut(s) 558
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 1 cut(s) 642
TspRI CASTG 1 cut(s) 567
Van91I CCANNNNNTGG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.