RLG00000003551

ER membrane protein complex subunit 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017321
Physical Location & Seq
Reverse (-)
49942923 .. 49944339
1417 bp
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UTR
Exon/CDS
Intron
RLM00000003551

Sequence Viewer

Length: 366 bp
ATGAAAATAAACTGCGAGCTGATCAAATTTGAAAGCATTCGTTCTAAGGTTCAAGTGCTTACTTGGTTGGCAGCTCATGGGAAAGTTAGTACTTGTGACAATATCCTTGAGGTAGGGGAGAGGGTGGTGGCCATGGACTGCCAGTGTCTTGATGTTGCAAAGGACCTCATCAAGCTTTTACTAAAGGCATTTCGAGAGAGTAAAAGAGTTGGCAAGCTAAAGGTTATGTTGCTTGAGGCAAAGGGATCCTGGGTAGAGGTAGAGAAGGCTTATCTAATATGTGAATTTCAATCTATCCTTCTTTTGCAGGTAATACATAAGGGTAGCTATGGCAAAGTCTCAAGGCGATACTTCAGGGGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19

Protein Analysis

122

Amino Acids

13.84

Weight (kDa)

9.4

Isoelectric Point (pI)

24.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03340
rosa_chinensis RchiOBHm_Chr5g0051541 RchiOBHm_Chr6g0244381 RchiOBHm_Chr7g0229041
rosa_laevigata RLG00000003551 RLG00000007409
rosa_multiflora Rmu_co8186706.1_g000001 Rmu_co8442279.1_g000001
rosa_roxburghii Rroxscaffold_7G00158180
rosa_rugosa Rorug05G0508200
rosa_samantha Rh6AG023300 Rh7DG291700
rosa_wichuraiana Rw2G024010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 240, 253
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 2 cut(s) 26, 284
AcuI CTGAAG 1 cut(s) 337
AfaI GTAC 1 cut(s) 91
AgsI TTSAA 3 cut(s) 32, 53, 290
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 5 cut(s) 19, 74, 175, 217, 327
AluI AGCT 5 cut(s) 19, 74, 175, 217, 327
Alw26I GTCTC 1 cut(s) 343
AlwI GGATC 2 cut(s) 240, 253
AoxI GGCC 2 cut(s) 129, 358
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 26, 284
Asp700I GAANNNNTTC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 163, 358
AvaII GGWCC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 131
BamHI GGATCC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 250
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 343
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 358
BmiI GGNNCC 2 cut(s) 247, 359
BmrFI CCNGG 1 cut(s) 250
BpuEI CTTGAG 3 cut(s) 128, 254, 325
BsaJI CCNNGG 2 cut(s) 132, 249
Bse1I ACTGG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 132, 249
BseNI ACTGG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 83
BshFI GGCC 2 cut(s) 131, 360
BsmAI GTCTC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 36
BsnI GGCC 2 cut(s) 131, 360
Bsp143I GATC 2 cut(s) 21, 245
Bsp19I CCATGG 1 cut(s) 132
BspANI GGCC 2 cut(s) 131, 360
BspLI GGNNCC 2 cut(s) 247, 359
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 2 cut(s) 240, 253
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 132, 249
BssMI GATC 2 cut(s) 21, 245
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 250
BstC8I GCNNGC 2 cut(s) 17, 215
BstDEI CTNAG 1 cut(s) 45
BstDSI CCRYGG 1 cut(s) 132
BstKTI GATC 2 cut(s) 24, 248
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 2 cut(s) 21, 245
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 2 cut(s) 131, 360
BtgI CCRYGG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 149
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 2 cut(s) 17, 215
Cfr13I GGNCC 2 cut(s) 163, 358
Csp6I GTAC 1 cut(s) 90
CviAII CATG 2 cut(s) 77, 133
CviJI RGCY 8 cut(s) 19, 74, 131, 175, 217, 269, 327, 360
CviKI_1 RGCY 8 cut(s) 19, 74, 131, 175, 217, 269, 327, 360
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 45
DpnI GATC 2 cut(s) 23, 247
DpnII GATC 2 cut(s) 21, 245
EaeI YGGCCR 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 80, 136
FaiI YATR 6 cut(s) 78, 134, 227, 280, 318, 330
FatI CATG 2 cut(s) 76, 132
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 131, 360
Hin1II CATG 2 cut(s) 80, 136
HindIII AAGCTT 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 149, 194
HpyAV CCTTC 2 cut(s) 259, 308
HpyCH4V TGCA 2 cut(s) 158, 307
HpyF3I CTNAG 1 cut(s) 45
Hsp92II CATG 2 cut(s) 80, 136
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 21, 245
LpnPI CCDG 5 cut(s) 155, 235, 262, 293, 340
Lsp1109I GCAGC 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 23, 247
MboI GATC 2 cut(s) 21, 245
MflI RGATCY 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 2 cut(s) 26, 284
MluNI TGGCCA 1 cut(s) 131
MnlI CCTC 5 cut(s) 103, 114, 176, 229, 250
Mox20I TGGCCA 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 36
MscI TGGCCA 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 250
Mva1269I GAATGC 1 cut(s) 36
MvaI CCWGG 1 cut(s) 250
NcoI CCATGG 1 cut(s) 132
NdeII GATC 2 cut(s) 21, 245
NlaIII CATG 2 cut(s) 80, 136
NlaIV GGNNCC 2 cut(s) 247, 359
NmuCI GTSAC 1 cut(s) 95
PctI GAATGC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 36
PkrI GCNGC 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 247, 359
PspPI GGNCC 2 cut(s) 163, 358
PspPPI RGGWCCY 1 cut(s) 163
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 2 cut(s) 21, 245
Sau96I GGNCC 2 cut(s) 163, 358
ScaI AGTACT 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 250
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 3 cut(s) 107, 233, 340
SmoI CTYRAG 3 cut(s) 107, 233, 340
Sse9I AATT 2 cut(s) 26, 284
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 132
TaqI TCGA 1 cut(s) 193
TasI AATT 2 cut(s) 26, 284
TatI WGTACW 1 cut(s) 89
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 2 cut(s) 26, 284
XmnI GAANNNNTTC 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.