Rh6AG023300

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017321
Physical Location & Seq
Reverse (-)
2747472 .. 2749508
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG023300.1

Sequence Viewer

Length: 486 bp
ATGCAGAATGGACTCTATATGAGCAGGTTGCACTTGCAGCCATGGACTGCCAGTGTCTTGATGTTACAAAGGACCTCATCAAGCTTGTATGAAAGGCATTTCCAGAGAGTAAAAGAGTTGGTTAGCAAGCTAGAGGCTATGTTGCTTGAGGCAAAGGGATCCTGGGCAGAGGCAGAGAAGGCTGATCTAATATGTGAATTTCAATCTATCCTTCTTTTGCGGGTAATACATAACAGAAGGGTAGATATGGCAAAGGCTCAAGGCAATACTTCAGGGGCCATTGAATGGTTGAATAAATATCTTGAAATATTTATGGCCGATAATGATGCTTGGAGAGAGCTGGCAGAAATCTATGTCTCGTTGCAAATAATTTGTGCAAGTTTTCACTCCTTCACACCTCAAAATGCGAGTTTGGGAGCGTGGTGCAGGAGCAACACTGGCTTGTGGAACTGGTGCTTTTGTTGTAGTTGTAGCAGCAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19

Protein Analysis

161

Amino Acids

18.43

Weight (kDa)

6.88

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_EMC2 PF22890 42 - 124 9.8e-26 EMC2 TPR-like repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03340
rosa_chinensis RchiOBHm_Chr5g0051541 RchiOBHm_Chr6g0244381 RchiOBHm_Chr7g0229041
rosa_laevigata RLG00000003551 RLG00000007409
rosa_multiflora Rmu_co8186706.1_g000001 Rmu_co8442279.1_g000001
rosa_roxburghii Rroxscaffold_7G00158180
rosa_rugosa Rorug05G0508200
rosa_samantha Rh6AG023300 Rh7DG291700
rosa_wichuraiana Rw2G024010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AccB7I CCANNNNNTGG 1 cut(s) 285
AciI CCGC 1 cut(s) 220
AclWI GGATC 2 cut(s) 153, 166
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 4 cut(s) 203, 284, 292, 305
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 3 cut(s) 84, 130, 340
AluI AGCT 3 cut(s) 84, 130, 340
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 2 cut(s) 153, 166
AoxI GGCC 2 cut(s) 276, 315
ApeKI GCWGC 2 cut(s) 37, 474
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 2 cut(s) 72, 276
AvaII GGWCC 1 cut(s) 72
BamHI GGATCC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 2 cut(s) 38, 475
BlsI GCNGC 2 cut(s) 39, 476
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 72, 276
BmiI GGNNCC 2 cut(s) 160, 277
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 316
BpuEI CTTGAG 2 cut(s) 167, 243
BsaJI CCNNGG 2 cut(s) 41, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 3 cut(s) 51, 442, 455
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 41, 162
BseLI CCNNNNNNNGG 1 cut(s) 285
BseNI ACTGG 3 cut(s) 51, 442, 455
BseXI GCAGC 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 445
BshFI GGCC 2 cut(s) 278, 317
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 361
BsnI GGCC 2 cut(s) 278, 317
Bsp143I GATC 2 cut(s) 158, 184
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 1 cut(s) 220
BspANI GGCC 2 cut(s) 278, 317
BspLI GGNNCC 2 cut(s) 160, 277
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 2 cut(s) 153, 166
BsrI ACTGG 3 cut(s) 51, 442, 455
BssECI CCNNGG 2 cut(s) 41, 162
BssMI GATC 2 cut(s) 158, 184
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 128, 342
BstDSI CCRYGG 1 cut(s) 41
BstKTI GATC 2 cut(s) 161, 187
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 2 cut(s) 158, 184
BstMWI GCNNNNNNNGC 3 cut(s) 37, 179, 438
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 2 cut(s) 278, 317
BtgI CCRYGG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 58, 435
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 128, 342
Cfr13I GGNCC 2 cut(s) 72, 276
CviAII CATG 1 cut(s) 42
DpnI GATC 2 cut(s) 160, 186
DpnII GATC 2 cut(s) 158, 184
EaeI YGGCCR 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 1 cut(s) 45
FatI CATG 1 cut(s) 41
FauI CCCGC 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 38, 475
Fsp4HI GCNGC 2 cut(s) 38, 475
FspBI CTAG 1 cut(s) 131
GluI GCNGC 2 cut(s) 38, 475
HaeIII GGCC 2 cut(s) 278, 317
Hin1II CATG 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 1 cut(s) 12
Hpy188III TCNNGA 4 cut(s) 58, 103, 302, 483
HpyAV CCTTC 4 cut(s) 172, 221, 231, 400
HpyCH4V TGCA 6 cut(s) 4, 31, 37, 364, 377, 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 179, 438
Hsp92II CATG 1 cut(s) 45
Kzo9I GATC 2 cut(s) 158, 184
LmnI GCTCC 2 cut(s) 416, 429
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 63
MalI GATC 2 cut(s) 160, 186
MboI GATC 2 cut(s) 158, 184
MflI RGATCY 1 cut(s) 158
MluCI AATT 2 cut(s) 197, 369
MlyI GAGTC 1 cut(s) 6
MnlI CCTC 5 cut(s) 85, 127, 142, 163, 408
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 3 cut(s) 37, 179, 438
NcoI CCATGG 1 cut(s) 41
NdeII GATC 2 cut(s) 158, 184
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 2 cut(s) 160, 277
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 2 cut(s) 39, 476
PleI GAGTC 1 cut(s) 6
PpsI GAGTC 1 cut(s) 6
PpuMI RGGWCCY 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 160, 277
PspPI GGNCC 2 cut(s) 72, 276
PspPPI RGGWCCY 1 cut(s) 72
PsrI GAACNNNNNNTAC 1 cut(s) 463
PsuI RGATCY 1 cut(s) 158
SatI GCNGC 2 cut(s) 38, 475
Sau3AI GATC 2 cut(s) 158, 184
Sau96I GGNCC 2 cut(s) 72, 276
SchI GAGTC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 163
SetI ASST 6 cut(s) 29, 77, 86, 132, 342, 400
SfaNI GCATC 1 cut(s) 316
SinI GGWCC 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 146, 258
SmoI CTYRAG 2 cut(s) 146, 258
Sse9I AATT 2 cut(s) 197, 369
SsiI CCGC 1 cut(s) 220
SspI AATATT 1 cut(s) 309
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 41
TasI AATT 2 cut(s) 197, 369
TscAI CASTG 2 cut(s) 58, 442
TseI GCWGC 2 cut(s) 37, 474
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 2 cut(s) 58, 442
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 1 cut(s) 197
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.