Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8186706.1

Orthogroup ID

OG0017321

Physical Location & Seq

Genomic Coordinates Reverse (-)

278 .. 629

Gene Structure 352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8186706.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atggtgagcaaaacggaggaggcgcaattgaacaggctcgagagccaggtcgataatggaggaggaggagcgtgggagtacctctgcctggtccgaaagctcaaggtgcggcgttccgagaaggttttgaagtacggcatgtcgatcttgaacgacctcagtaaacgatccagtcttggaccggaaggctgtttgattatggatcacggtagtgtagggaatggaatggaattacttgatggtgaatcgggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19

Protein Analysis

84

Amino Acids

9.14

Weight (kDa)

5.77

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017321)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03340
rosa_chinensis	RchiOBHm_Chr5g0051541 RchiOBHm_Chr6g0244381 RchiOBHm_Chr7g0229041
rosa_laevigata	RLG00000003551 RLG00000007409
rosa_multiflora	Rmu_co8186706.1_g000001 Rmu_co8442279.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158180
rosa_rugosa	Rorug05G0508200
rosa_samantha	Rh6AG023300 Rh7DG291700
rosa_wichuraiana	Rw2G024010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	2 cut(s)	162, 210
AfaI	GTAC	2 cut(s)	80, 134
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	31, 130, 151
AjnI	CCWGG	2 cut(s)	45, 87
AleI	CACNNNNGTG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
AlwI	GGATC	2 cut(s)	162, 210
Ama87I	CYCGRG	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	91, 179
AsuHPI	GGTGA	2 cut(s)	16, 254
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	2 cut(s)	91, 179
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	47, 89
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	2 cut(s)	47, 89
Bme18I	GGWCC	2 cut(s)	91, 179
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	91, 179
BmrFI	CCNGG	2 cut(s)	47, 89
BpuEI	CTTGAG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	47, 89
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	4 cut(s)	32, 75, 78, 81
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	144, 167, 202
BspACI	CCGC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	171
BspPI	GGATC	2 cut(s)	162, 210
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	3 cut(s)	144, 167, 202
Bst2UI	CCWGG	2 cut(s)	47, 89
Bst4CI	ACNGT	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	3 cut(s)	147, 170, 205
BstMBI	GATC	3 cut(s)	144, 167, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	2 cut(s)	47, 89
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	45, 87
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	91, 179
Csp6I	GTAC	2 cut(s)	79, 133
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	4 cut(s)	37, 45, 100, 189
CviKI_1	RGCY	4 cut(s)	37, 45, 100, 189
CviQI	GTAC	2 cut(s)	79, 133
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	3 cut(s)	146, 169, 204
DpnII	GATC	3 cut(s)	144, 167, 202
Eco47I	GGWCC	2 cut(s)	91, 179
Eco88I	CYCGRG	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	45, 87
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	140, 200
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	110
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	110
HapII	CCGG	1 cut(s)	182
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	2 cut(s)	16, 254
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	95, 118
Hpy188III	TCNNGA	3 cut(s)	40, 148, 249
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	115, 179
HpyCH4III	ACNGT	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	144, 167, 202
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	7 cut(s)	19, 32, 59, 74, 101, 184, 195
MalI	GATC	3 cut(s)	146, 169, 204
MboI	GATC	3 cut(s)	144, 167, 202
MfeI	CAATTG	1 cut(s)	26
MluCI	AATT	2 cut(s)	26, 230
MnlI	CCTC	7 cut(s)	10, 13, 53, 56, 59, 92, 167
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	47, 89
MunI	CAATTG	1 cut(s)	26
MvaI	CCWGG	2 cut(s)	47, 89
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	3 cut(s)	144, 167, 202
NlaIII	CATG	1 cut(s)	142
NspI	RCATGY	1 cut(s)	142
OliI	CACNNNNGTG	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	45, 87
PspGI	CCWGG	2 cut(s)	45, 87
PspPI	GGNCC	2 cut(s)	91, 179
RsaI	GTAC	2 cut(s)	80, 134
RsaNI	GTAC	2 cut(s)	79, 133
RseI	CAYNNNNRTG	1 cut(s)	210
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	3 cut(s)	144, 167, 202
Sau96I	GGNCC	2 cut(s)	91, 179
ScrFI	CCNGG	2 cut(s)	47, 89
SetI	ASST	6 cut(s)	51, 84, 102, 108, 126, 159
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	2 cut(s)	91, 179
SlaI	CTCGAG	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	2 cut(s)	38, 101
SmoI	CTYRAG	2 cut(s)	38, 101
Sse9I	AATT	2 cut(s)	26, 230
SsiI	CCGC	1 cut(s)	109
StyD4I	CCNGG	2 cut(s)	45, 87
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	39, 51, 143
TasI	AATT	2 cut(s)	26, 230
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	245
TspGWI	ACGGA	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	91, 179
XceI	RCATGY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.