Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0017321

Physical Location & Seq

Genomic Coordinates Reverse (-)

35303259 .. 35310575

Gene Structure 7317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G024010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTCCGCCATTCTCCTCCGCAAGCAGCTCACCCGCGACGACTCCTATCTCTGGCCTAGGCTGTCCCTGACGATGCAGTCCAGCCTCAAATCGATTCTCCCATCCTGTATTCAACGCGAGTCAAATCGATTTCCAAGAAGCTCTGTCTCCGAGCTCGCCTCCGGAATCTTGCCTGACAACGGCTGGCCAGAGCTCCTCCCGTTCATGTTCCAATGCGTCTCCTCCGATTCATCGAAGCTTCAAGAATCGGCGTTCTTGATATTCGATCAGCTTTCTCAGTACATCGGCGACTCCTTGGTTCCGTTCACCAAGGAATTGCACACCGTCTTCTTGTACTGCTTAAGCTCCTCCACCAACTCTGACACCCGAAGTCCAACCAATTGTTTTGGATTTGTAGGTGTGAGCATCGGAAAGGCAGGGTATCACCAAGGCGGCGCGACCCGATTCTCTATGTTGGTGAGGATAGTTCAGAAATCAGGGATTAAAGAAGAAGTTCCTCAAGCAAAGGACAGAATGGATCTTATCAGTTATGAATATGTGGCATGTCAAGATGCAAAGGAATGGGTCATTTTCCTTAGTAAGTTTGTTTTTGTATTTCTCGATGCAGAATGGACTCTATATGTGCAGGTTGCACTTGCAGCCATGAACTGCCAGTGTCTTGATGTTGCAAAGGACCTCATCAAGCTTTTACAAAAGGCATTTCGAGAGAGTAAAAGAGTTGGCAAGCTAGAGGCTATATTGCTTGAGGCAAAGGGATCCTGGGTAGAGGCAGAGAAGGCTTATCTAATATGTGAATTTCAGTCTATCCTTCTTTTGCAGGGCGATACTTCAGGGGCCATTGAATGGCTTAATAAATATGTTGAAATATTTACGGCCGATAATGATGCCCGGAGAGAGAACCACCACAGGTCAAGTGTCCTTAAGATTAGTTGGGACACCTTGCAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

316

Amino Acids

35.79

Weight (kDa)

6.15

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO5	PF25780	49 - 123	5.4e-13	IPO5-like, TPR repeats
TPR_EMC2	PF22890	240 - 302	4.2e-10	EMC2 TPR-like repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017321)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03340
rosa_chinensis	RchiOBHm_Chr5g0051541 RchiOBHm_Chr6g0244381 RchiOBHm_Chr7g0229041
rosa_laevigata	RLG00000003551 RLG00000007409
rosa_multiflora	Rmu_co8186706.1_g000001 Rmu_co8442279.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158180
rosa_rugosa	Rorug05G0508200
rosa_samantha	Rh6AG023300 Rh7DG291700
rosa_wichuraiana	Rw2G024010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
Acc36I	ACCTGC	1 cut(s)	616
AccB7I	CCANNNNNTGG	1 cut(s)	843
AccII	CGCG	3 cut(s)	36, 117, 437
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	4 cut(s)	6, 19, 34, 432
AclWI	GGATC	3 cut(s)	525, 750, 763
AcoI	YGGCCR	2 cut(s)	185, 873
AcsI	RAATTY	1 cut(s)	794
AcuI	CTGAAG	1 cut(s)	813
AfaI	GTAC	2 cut(s)	281, 335
AfiI	CCNNNNNNNGG	3 cut(s)	51, 179, 843
AflII	CTTAAG	2 cut(s)	340, 920
AgsI	TTSAA	4 cut(s)	113, 242, 842, 863
AjnI	CCWGG	1 cut(s)	758
AluBI	AGCT	9 cut(s)	28, 141, 154, 193, 238, 271, 345, 685, 727
AluI	AGCT	9 cut(s)	28, 141, 154, 193, 238, 271, 345, 685, 727
Alw21I	GWGCWC	2 cut(s)	156, 195
Alw26I	GTCTC	2 cut(s)	151, 223
AlwI	GGATC	3 cut(s)	525, 750, 763
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	4 cut(s)	53, 185, 834, 873
ApeKI	GCWGC	2 cut(s)	25, 638
ApoI	RAATTY	1 cut(s)	794
Asp700I	GAANNNNTTC	1 cut(s)	492
AspA2I	CCTAGG	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	437
AspS9I	GGNCC	2 cut(s)	673, 834
AsuC2I	CCSGG	1 cut(s)	889
AsuHPI	GGTGA	4 cut(s)	22, 298, 416, 469
AvaII	GGWCC	1 cut(s)	673
AvrII	CCTAGG	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	187
BamHI	GGATCC	1 cut(s)	755
BanII	GRGCYC	2 cut(s)	156, 195
BbsI	GAAGAC	1 cut(s)	319
Bbv12I	GWGCWC	2 cut(s)	156, 195
BbvI	GCAGC	2 cut(s)	37, 650
BccI	CCATC	1 cut(s)	109
BceAI	ACGGC	2 cut(s)	196, 888
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BciT130I	CCWGG	1 cut(s)	760
BcnI	CCSGG	1 cut(s)	889
BcoDI	GTCTC	2 cut(s)	151, 223
BfaI	CTAG	2 cut(s)	57, 728
BfrI	CTTAAG	2 cut(s)	340, 920
BfuAI	ACCTGC	1 cut(s)	616
BisI	GCNGC	3 cut(s)	26, 433, 639
BlnI	CCTAGG	1 cut(s)	56
BlsI	GCNGC	3 cut(s)	27, 434, 640
Bme1390I	CCNGG	2 cut(s)	760, 889
Bme18I	GGWCC	1 cut(s)	673
BmgT120I	GGNCC	2 cut(s)	673, 834
BmiI	GGNNCC	3 cut(s)	300, 757, 835
BmrFI	CCNGG	2 cut(s)	760, 889
BmsI	GCATC	5 cut(s)	63, 414, 541, 592, 874
BpiI	GAAGAC	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpuEI	CTTGAG	2 cut(s)	483, 764
BpuMI	CCSGG	1 cut(s)	889
Bsa29I	ATCGAT	2 cut(s)	92, 127
BsaJI	CCNNGG	5 cut(s)	56, 294, 309, 427, 759
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 179, 843
Bse1I	ACTGG	1 cut(s)	652
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	760
BseCI	ATCGAT	2 cut(s)	92, 127
BseDI	CCNNGG	5 cut(s)	56, 294, 309, 427, 759
BseGI	GGATG	1 cut(s)	101
BseLI	CCNNNNNNNGG	3 cut(s)	51, 179, 843
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	4 cut(s)	5, 185, 211, 337
BseX3I	CGGCCG	1 cut(s)	873
BseXI	GCAGC	2 cut(s)	37, 650
BsgI	GTGCAG	1 cut(s)	644
Bsh1236I	CGCG	3 cut(s)	36, 117, 437
Bsh1285I	CGRYCG	1 cut(s)	876
BshFI	GGCC	4 cut(s)	55, 187, 836, 875
BshVI	ATCGAT	2 cut(s)	92, 127
BsiEI	CGRYCG	1 cut(s)	876
BsiHKAI	GWGCWC	2 cut(s)	156, 195
BsiSI	CCGG	2 cut(s)	162, 889
BslFI	GGGAC	2 cut(s)	49, 947
BslI	CCNNNNNNNGG	3 cut(s)	51, 179, 843
BsmAI	GTCTC	2 cut(s)	151, 223
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	2 cut(s)	49, 947
BsnI	GGCC	4 cut(s)	55, 187, 836, 875
Bsp1286I	GDGCHC	2 cut(s)	156, 195
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	265, 517, 755
BspACI	CCGC	4 cut(s)	6, 19, 34, 432
BspANI	GGCC	4 cut(s)	55, 187, 836, 875
BspCNI	CTCAG	1 cut(s)	289
BspDI	ATCGAT	2 cut(s)	92, 127
BspEI	TCCGGA	1 cut(s)	161
BspFNI	CGCG	3 cut(s)	36, 117, 437
BspLI	GGNNCC	3 cut(s)	300, 757, 835
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	3 cut(s)	525, 750, 763
BspTI	CTTAAG	2 cut(s)	340, 920
BsrI	ACTGG	1 cut(s)	652
BssECI	CCNNGG	5 cut(s)	56, 294, 309, 427, 759
BssMI	GATC	3 cut(s)	265, 517, 755
BssT1I	CCWWGG	4 cut(s)	56, 294, 309, 427
Bst2UI	CCWGG	1 cut(s)	760
Bst4CI	ACNGT	1 cut(s)	325
BstAFI	CTTAAG	2 cut(s)	340, 920
BstC8I	GCNNGC	4 cut(s)	23, 156, 185, 725
BstDEI	CTNAG	2 cut(s)	276, 575
BstF5I	GGATG	1 cut(s)	101
BstFNI	CGCG	3 cut(s)	36, 117, 437
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	3 cut(s)	268, 520, 758
BstMAI	GTCTC	2 cut(s)	151, 223
BstMBI	GATC	3 cut(s)	265, 517, 755
BstMCI	CGRYCG	1 cut(s)	876
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 776
BstNI	CCWGG	1 cut(s)	760
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	2 cut(s)	758, 887
BstUI	CGCG	3 cut(s)	36, 117, 437
BstV1I	GCAGC	2 cut(s)	37, 650
BstV2I	GAAGAC	1 cut(s)	319
BstX2I	RGATCY	2 cut(s)	517, 755
BstYI	RGATCY	2 cut(s)	517, 755
BstZI	CGGCCG	1 cut(s)	873
Bsu15I	ATCGAT	2 cut(s)	92, 127
BsuRI	GGCC	4 cut(s)	55, 187, 836, 875
BsuTUI	ATCGAT	2 cut(s)	92, 127
BtsCI	GGATG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	659
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	4 cut(s)	23, 156, 185, 725
CfoI	GCGC	1 cut(s)	437
Cfr13I	GGNCC	2 cut(s)	673, 834
ClaI	ATCGAT	2 cut(s)	92, 127
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	280, 334
CviAII	CATG	3 cut(s)	205, 543, 643
CviQI	GTAC	2 cut(s)	280, 334
DdeI	CTNAG	2 cut(s)	276, 575
DpnI	GATC	3 cut(s)	267, 519, 757
DpnII	GATC	3 cut(s)	265, 517, 755
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	2 cut(s)	185, 873
EagI	CGGCCG	1 cut(s)	873
Ecl136II	GAGCTC	2 cut(s)	154, 193
EclXI	CGGCCG	1 cut(s)	873
Eco130I	CCWWGG	4 cut(s)	56, 294, 309, 427
Eco24I	GRGCYC	2 cut(s)	156, 195
Eco47I	GGWCC	1 cut(s)	673
Eco52I	CGGCCG	1 cut(s)	873
Eco53kI	GAGCTC	2 cut(s)	154, 193
Eco57I	CTGAAG	1 cut(s)	813
EcoICRI	GAGCTC	2 cut(s)	154, 193
EcoO109I	RGGNCCY	1 cut(s)	673
EcoRII	CCWGG	1 cut(s)	758
EcoT14I	CCWWGG	4 cut(s)	56, 294, 309, 427
EcoT38I	GRGCYC	2 cut(s)	156, 195
ErhI	CCWWGG	4 cut(s)	56, 294, 309, 427
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	3 cut(s)	208, 546, 646
FaqI	GGGAC	2 cut(s)	49, 947
FatI	CATG	3 cut(s)	204, 542, 642
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	3 cut(s)	26, 433, 639
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	2 cut(s)	156, 195
Fsp4HI	GCNGC	3 cut(s)	26, 433, 639
FspBI	CTAG	2 cut(s)	57, 728
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	3 cut(s)	26, 433, 639
HaeIII	GGCC	4 cut(s)	55, 187, 836, 875
HapII	CCGG	2 cut(s)	162, 889
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	437
Hin1II	CATG	3 cut(s)	208, 546, 646
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HindIII	AAGCTT	2 cut(s)	236, 683
HinfI	GANTC	9 cut(s)	41, 94, 119, 165, 227, 245, 290, 444, 613
HpaII	CCGG	2 cut(s)	162, 889
HphI	GGTGA	4 cut(s)	22, 298, 416, 469
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	5 cut(s)	151, 226, 361, 410, 471
Hpy188III	TCNNGA	7 cut(s)	162, 242, 256, 548, 599, 659, 704
Hpy8I	GTNNAC	1 cut(s)	306
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	769, 818
HpyCH4III	ACNGT	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 776
HpyF3I	CTNAG	2 cut(s)	276, 575
Hsp92II	CATG	3 cut(s)	208, 546, 646
HspAI	GCGC	1 cut(s)	435
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	265, 517, 755
LmnI	GCTCC	2 cut(s)	198, 350
Lsp1109I	GCAGC	2 cut(s)	37, 650
LweI	GCATC	5 cut(s)	63, 414, 541, 592, 874
MaeI	CTAG	2 cut(s)	57, 728
MalI	GATC	3 cut(s)	267, 519, 757
MboI	GATC	3 cut(s)	265, 517, 755
MboII	GAAGA	2 cut(s)	319, 500
MfeI	CAATTG	1 cut(s)	379
MflI	RGATCY	2 cut(s)	517, 755
MhlI	GDGCHC	2 cut(s)	156, 195
MlsI	TGGCCA	1 cut(s)	187
MluCI	AATT	3 cut(s)	314, 379, 794
MluNI	TGGCCA	1 cut(s)	187
MlyI	GAGTC	4 cut(s)	35, 128, 284, 607
MmeI	TCCRAC	1 cut(s)	398
Mox20I	TGGCCA	1 cut(s)	187
MroI	TCCGGA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	187
MseI	TTAA	4 cut(s)	341, 483, 849, 921
Msp20I	TGGCCA	1 cut(s)	187
MspCI	CTTAAG	2 cut(s)	340, 920
MspI	CCGG	2 cut(s)	162, 889
MspR9I	CCNGG	2 cut(s)	760, 889
MunI	CAATTG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	760
MvnI	CGCG	3 cut(s)	36, 117, 437
MwoI	GCNNNNNNNGC	2 cut(s)	638, 776
NciI	CCSGG	1 cut(s)	889
NdeII	GATC	3 cut(s)	265, 517, 755
NlaIII	CATG	3 cut(s)	208, 546, 646
NlaIV	GGNNCC	3 cut(s)	300, 757, 835
NspI	RCATGY	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	5 cut(s)	94, 165, 227, 245, 444
PflMI	CCANNNNNTGG	1 cut(s)	843
PkrI	GCNGC	3 cut(s)	27, 434, 640
PleI	GAGTC	4 cut(s)	35, 127, 284, 607
PpsI	GAGTC	4 cut(s)	35, 127, 284, 607
PpuMI	RGGWCCY	1 cut(s)	673
Psp124BI	GAGCTC	2 cut(s)	156, 195
Psp5II	RGGWCCY	1 cut(s)	673
Psp6I	CCWGG	1 cut(s)	758
PspGI	CCWGG	1 cut(s)	758
PspN4I	GGNNCC	3 cut(s)	300, 757, 835
PspPI	GGNCC	2 cut(s)	673, 834
PspPPI	RGGWCCY	1 cut(s)	673
PsuI	RGATCY	2 cut(s)	517, 755
RsaI	GTAC	2 cut(s)	281, 335
RsaNI	GTAC	2 cut(s)	280, 334
SacI	GAGCTC	2 cut(s)	156, 195
SaqAI	TTAA	4 cut(s)	341, 483, 849, 921
SatI	GCNGC	3 cut(s)	26, 433, 639
Sau3AI	GATC	3 cut(s)	265, 517, 755
Sau96I	GGNCC	2 cut(s)	673, 834
SchI	GAGTC	4 cut(s)	35, 128, 284, 607
ScrFI	CCNGG	2 cut(s)	760, 889
SduI	GDGCHC	2 cut(s)	156, 195
SfaNI	GCATC	5 cut(s)	63, 414, 541, 592, 874
SinI	GGWCC	1 cut(s)	673
SmlI	CTYRAG	4 cut(s)	340, 498, 743, 920
SmoI	CTYRAG	4 cut(s)	340, 498, 743, 920
Sse9I	AATT	3 cut(s)	314, 379, 794
SsiI	CCGC	4 cut(s)	6, 19, 34, 432
SspI	AATATT	1 cut(s)	867
SspMI	CTAG	2 cut(s)	57, 728
SstI	GAGCTC	2 cut(s)	156, 195
StyD4I	CCNGG	2 cut(s)	758, 887
StyI	CCWWGG	4 cut(s)	56, 294, 309, 427
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	6 cut(s)	92, 127, 233, 264, 600, 703
TasI	AATT	3 cut(s)	314, 379, 794
TatI	WGTACW	2 cut(s)	279, 333
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	5 cut(s)	94, 165, 227, 245, 444
Tru1I	TTAA	4 cut(s)	341, 483, 849, 921
Tru9I	TTAA	4 cut(s)	341, 483, 849, 921
TscAI	CASTG	1 cut(s)	659
TseI	GCWGC	2 cut(s)	25, 638
TspDTI	ATGAA	4 cut(s)	193, 219, 546, 659
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	659
Van91I	CCANNNNNTGG	1 cut(s)	843
Vha464I	CTTAAG	2 cut(s)	340, 920
VpaK11BI	GGWCC	1 cut(s)	673
XapI	RAATTY	1 cut(s)	794
XceI	RCATGY	1 cut(s)	546
XmaJI	CCTAGG	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	2 cut(s)	57, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.