Rmu_co8442279.1_g000001

ER membrane protein complex subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8442279.1
Physical Location & Seq
Reverse (-)
1 .. 820
820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8442279.1_g000001.1.cds

Sequence Viewer

Length: 227 bp
atgttgcttgaggcaaagggatcctgggcagaggcagaggctgatctaatatgtgaatttcaatctatccttcttttgcgggtaatacataacaaaagggtagatatggcaaaggctcaaggcgatacttcaggggccattgaatggttgaataaatatcttgaaatatttatggccgataatgatgcttggagagagctggcagaaatctatgtctcgttgcaaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.59

Weight (kDa)

4.52

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017321)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 1 cut(s) 79
AclWI GGATC 2 cut(s) 15, 28
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 4 cut(s) 62, 143, 151, 164
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 2 cut(s) 15, 28
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 2 cut(s) 135, 174
ApoI RAATTY 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 135
BamHI GGATCC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 2 cut(s) 22, 136
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 175
BpuEI CTTGAG 2 cut(s) 29, 102
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 144
BshFI GGCC 2 cut(s) 137, 176
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 220
BsnI GGCC 2 cut(s) 137, 176
Bsp143I GATC 2 cut(s) 20, 43
BspACI CCGC 1 cut(s) 79
BspANI GGCC 2 cut(s) 137, 176
BspLI GGNNCC 2 cut(s) 22, 136
BspPI GGATC 2 cut(s) 15, 28
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 20, 43
Bst2UI CCWGG 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 201
BstKTI GATC 2 cut(s) 23, 46
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 2 cut(s) 20, 43
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 2 cut(s) 137, 176
Cac8I GCNNGC 1 cut(s) 201
CaiI CAGNNNCTG 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 135
CviJI RGCY 5 cut(s) 41, 116, 137, 176, 199
CviKI_1 RGCY 5 cut(s) 41, 116, 137, 176, 199
DpnI GATC 2 cut(s) 22, 45
DpnII GATC 2 cut(s) 20, 43
EaeI YGGCCR 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 23
FaiI YATR 5 cut(s) 52, 90, 107, 173, 213
FauI CCCGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 137, 176
Hpy188III TCNNGA 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 20, 43
LpnPI CCDG 4 cut(s) 10, 37, 117, 185
LweI GCATC 1 cut(s) 175
MalI GATC 2 cut(s) 22, 45
MboI GATC 2 cut(s) 20, 43
MflI RGATCY 1 cut(s) 20
MluCI AATT 1 cut(s) 56
MnlI CCTC 3 cut(s) 4, 25, 31
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
NdeII GATC 2 cut(s) 20, 43
NlaIV GGNNCC 2 cut(s) 22, 136
PflMI CCANNNNNTGG 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 22, 136
PspPI GGNCC 1 cut(s) 135
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 20
Sau3AI GATC 2 cut(s) 20, 43
Sau96I GGNCC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 25
SetI ASST 1 cut(s) 201
SfaNI GCATC 1 cut(s) 175
SgeI CNNG 9 cut(s) 20, 36, 37, 92, 131, 144, 173, 201, 212
SmlI CTYRAG 2 cut(s) 8, 117
SmoI CTYRAG 2 cut(s) 8, 117
Sse9I AATT 1 cut(s) 56
SsiI CCGC 1 cut(s) 79
SspI AATATT 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 23
TasI AATT 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 144
XapI RAATTY 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.