RchiOBHm_Chr7g0229041

ER membrane protein complex subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
52388011 .. 52388686
676 bp
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UTR
Exon/CDS
Intron
PRQ20517

Sequence Viewer

Length: 180 bp
ATGGTGAGCAAAACAGAGGAAGCACAATTAAACAGGCTCGAGAGCCAGATCGATAATGGAGGAGGAGGAGGAGGAGGAGTGTGGGAGTACCTGTGCTTAGTCCGAAAGCTCAAGATCCAGTCTTGGATGGAAGGGAATGAAGTGGAATTACTTGATGATGAATCAGAATGGACTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

6.64

Weight (kDa)

4.23

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017321)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 109
AfaI GTAC 1 cut(s) 89
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AlwI GGATC 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 38
BarI GAAGNNNNNNTAC 2 cut(s) 132, 164
BccI CCATC 1 cut(s) 121
BfmI CTRYAG 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 51
BsaXI ACNNNNNCTCC 4 cut(s) 63, 77, 93, 107
Bse1I ACTGG 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 51
BseGI GGATG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 6 cut(s) 75, 78, 81, 84, 87, 90
BshVI ATCGAT 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 38
Bsp143I GATC 2 cut(s) 48, 114
BspDI ATCGAT 1 cut(s) 51
BspPI GGATC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 118
BssMI GATC 2 cut(s) 48, 114
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 2 cut(s) 51, 117
BstMBI GATC 2 cut(s) 48, 114
BstSFI CTRYAG 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
Bsu15I ATCGAT 1 cut(s) 51
BsuTUI ATCGAT 1 cut(s) 51
BtsCI GGATG 1 cut(s) 132
ClaI ATCGAT 1 cut(s) 51
Csp6I GTAC 1 cut(s) 88
CviJI RGCY 3 cut(s) 37, 45, 109
CviKI_1 RGCY 3 cut(s) 37, 45, 109
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 97
DpnI GATC 2 cut(s) 50, 116
DpnII GATC 2 cut(s) 48, 114
Eco88I CYCGRG 1 cut(s) 38
FaiI YATR 1 cut(s) 178
FokI GGATG 1 cut(s) 139
HinfI GANTC 2 cut(s) 161, 172
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 104, 166
Hpy188III TCNNGA 2 cut(s) 40, 112
HpyAV CCTTC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 97
Kzo9I GATC 2 cut(s) 48, 114
LpnPI CCDG 4 cut(s) 19, 59, 104, 131
MalI GATC 2 cut(s) 50, 116
MboI GATC 2 cut(s) 48, 114
MflI RGATCY 1 cut(s) 114
MluCI AATT 2 cut(s) 26, 146
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 7 cut(s) 10, 53, 56, 59, 62, 65, 68
MseI TTAA 1 cut(s) 29
NdeII GATC 2 cut(s) 48, 114
PaeR7I CTCGAG 1 cut(s) 38
PfeI GAWTC 1 cut(s) 161
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 114
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 2 cut(s) 48, 114
SchI GAGTC 1 cut(s) 166
SetI ASST 2 cut(s) 93, 111
SfcI CTRYAG 1 cut(s) 176
Sfr274I CTCGAG 1 cut(s) 38
SgeI CNNG 9 cut(s) 46, 50, 52, 58, 103, 124, 130, 135, 164
SlaI CTCGAG 1 cut(s) 38
SmlI CTYRAG 2 cut(s) 38, 110
SmoI CTYRAG 2 cut(s) 38, 110
Sse9I AATT 2 cut(s) 26, 146
TaqI TCGA 2 cut(s) 39, 51
TasI AATT 2 cut(s) 26, 146
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 153, 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XhoI CTCGAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.