Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003317

Physical Location & Seq

Genomic Coordinates Reverse (-)

54978919 .. 54984253

Gene Structure 5335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGGTCTGCAAGACTGTGCTCACAGGCTTATCGGAAACTGGCATTTGAGGGGCATAAGTGGAGGAGAGAAGAAGAGGCTGAGCATTGCACTCGAAATACTCACAAAGCCAAGGTTGTTGTTTCTCGATGAGCCTACCAGTGGCCTCGACAGTGCTGCAGCTTTCTTCGTAGTTCAAACCCTCAGATACATTGCTAAAGATGGCAGAACTGTCATTTCTTCGATTCATCAGCCCAGTAGTGAAGTGTTTGCTTTGTTTGATGATCTTGTTCTGCTTTCTAGTGGCCAAACAGTTTATTCTGGTCAAGCAAAAATGGCAGTAGAGCTAGCAGAGATAAAAGCAATGCTTGTTGACCAGTACAGACGCTCGGAGTATGCAACAAGAATCAGGATTCGAGAAATATCGTCCATGGTAATAAGGTTTACTATTTTACAGCTTGCACTCTTAAGGTATGGCCACGATGATAATGAAAAACTTGTTTTACAGGAAGGACTTGGGGTAGAAAAGAGGAGTGGAAGCCAAGCAAAGTGGTGGAAGCAACTCTCAATATTGACACAGAAATCTTTCCTCAACATGTCTAGGGATATGGGGTATTATACTGGGTTTTTCATAGAGAAAGGCTCAGTGGGCATTATGGAGTTGCTGTCTTTAATTACTCTGTCAAATTTCCTCTCTTCCTTCCCATTCTTGGCTTTGATGTCAATTGCATCCTCAACTATAACTTACTACATGGTGGAAAAGCATTCTCATTTCTCCAACTATGTGTTCATGGGCCTTGATCTTCTCAGCGCCATTGCAGCGGTAGAAAGCTCCATGATGATCATAGCTTCTCTTGTTCCGAACTACTTAATGGGAGTAATAATTGGAGCAGGATACTTGGGAATCATGATGATGACTGCCGGATTCTTCTGCTTCATGCCTGACCTTCCCAAACCCGTTTGGCGCTATCCAGTTTCATATCTGAACTATGGTGCATGGGCGCTGCAGGATGGGCTAACAGGCTGTTGCAATTGTTGGCCGCATGGGATATTAGTTTTAGACTCTGCTATTGATATCAAGCATTACCAAAACAAAGAAATTATCCAAATTATACTGGGTATGCAGGGAGAATACAAGAACGGATTGATTGGCCGTGAGTTTGATTCTCAACCCAACGGCCCGAAGCTGAAAGGCGAGGACATGCTCAAAACTCTGCTGGGTATTCAACCAGATCAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0080051 GO:0080167 GO:0080172

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

406

Amino Acids

45.4

Weight (kDa)

7.08

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	2 - 47	2.4e-07	ABC transporter
ABC2_membrane	PF01061	216 - 328	2.4e-11	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51460
fragaria_vesca	FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480
malus_domestica	MD00G1192100.v1.1 MD03G1172300.v1.1
prunus_persica	Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1
pyrus_communis	pycom03g12950
rosa_chinensis	RchiOBHm_Chr5g0052851 RchiOBHm_Chr5g0052971
rosa_laevigata	RLG00000034787
rosa_multiflora	Rmu_sc0006729.1_g000004 Rmu_ssc0000311.1_g000005 Rmu_ssc0000311.1_g000013
rosa_roxburghii	Rroxscaffold_1G00027600 Rroxscaffold_1G00028670 Rroxscaffold_1G00028720 Rroxscaffold_1G00028730
rosa_rugosa	Rorug05G0269000
rosa_samantha	Rh5BG352000 Rh5CG378600 Rh5DG368300
rosa_wichuraiana	Rw5G032170 Rw5G032180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	800, 1019
AcoI	YGGCCR	4 cut(s)	283, 454, 1016, 1129
AcsI	RAATTY	1 cut(s)	664
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	140, 688
AflII	CTTAAG	1 cut(s)	445
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	2 cut(s)	176, 1205
AjuI	GAANNNNNNNTTGG	2 cut(s)	749, 781
AluBI	AGCT	6 cut(s)	161, 325, 436, 810, 827, 1165
AluI	AGCT	6 cut(s)	161, 325, 436, 810, 827, 1165
Alw21I	GWGCWC	1 cut(s)	22
AoxI	GGCC	7 cut(s)	142, 283, 454, 772, 1016, 1129, 1156
ApeKI	GCWGC	4 cut(s)	155, 158, 797, 982
ApoI	RAATTY	1 cut(s)	664
Asp700I	GAANNNNTTC	1 cut(s)	563
AspLEI	GCGC	3 cut(s)	791, 945, 982
AspS9I	GGNCC	2 cut(s)	772, 1157
AsuNHI	GCTAGC	1 cut(s)	325
BalI	TGGCCA	2 cut(s)	285, 456
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	4 cut(s)	142, 170, 809, 969
BccI	CCATC	2 cut(s)	194, 983
BceAI	ACGGC	2 cut(s)	1116, 1171
BcgI	CGANNNNNNTGC	4 cut(s)	73, 107, 137, 171
BciVI	GTATCC	1 cut(s)	866
BclI	TGATCA	1 cut(s)	819
BfaI	CTAG	3 cut(s)	279, 326, 579
BfmI	CTRYAG	2 cut(s)	156, 983
BfoI	RGCGCY	3 cut(s)	792, 946, 983
BfrI	CTTAAG	1 cut(s)	445
BfuI	GTATCC	1 cut(s)	866
BisI	GCNGC	5 cut(s)	156, 159, 798, 983, 1019
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	5 cut(s)	157, 160, 799, 984, 1020
BmgT120I	GGNCC	2 cut(s)	772, 1157
BmrI	ACTGGG	3 cut(s)	228, 609, 1103
BmsI	GCATC	1 cut(s)	716
BmtI	GCTAGC	1 cut(s)	329
BmuI	ACTGGG	3 cut(s)	228, 609, 1103
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
Bpu1102I	GCTNAGC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	110, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 688
Bse1I	ACTGG	7 cut(s)	44, 138, 234, 355, 604, 950, 1098
Bse3DI	GCAATG	4 cut(s)	84, 189, 348, 792
BseDI	CCNNGG	2 cut(s)	110, 408
BseGI	GGATG	2 cut(s)	707, 994
BseLI	CCNNNNNNNGG	2 cut(s)	140, 688
BseMI	GCAATG	4 cut(s)	84, 189, 348, 792
BseMII	CTCAG	4 cut(s)	71, 196, 636, 799
BseNI	ACTGG	7 cut(s)	44, 138, 234, 355, 604, 950, 1098
BseRI	GAGGAG	2 cut(s)	78, 523
BseXI	GCAGC	4 cut(s)	142, 170, 809, 969
BseYI	CCCAGC	1 cut(s)	1195
BshFI	GGCC	7 cut(s)	144, 285, 456, 774, 1018, 1131, 1158
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	900
BslI	CCNNNNNNNGG	2 cut(s)	140, 688
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	7 cut(s)	144, 285, 456, 774, 1018, 1131, 1158
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	262, 778, 819, 1210
Bsp1720I	GCTNAGC	1 cut(s)	80
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	2 cut(s)	800, 1019
BspANI	GGCC	7 cut(s)	144, 285, 456, 774, 1018, 1131, 1158
BspCNI	CTCAG	4 cut(s)	72, 195, 635, 798
BspHI	TCATGA	1 cut(s)	885
BspMAI	CTGCAG	2 cut(s)	160, 987
BspOI	GCTAGC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	445
BsrDI	GCAATG	4 cut(s)	84, 189, 348, 792
BsrI	ACTGG	7 cut(s)	44, 138, 234, 355, 604, 950, 1098
BssECI	CCNNGG	2 cut(s)	110, 408
BssMI	GATC	4 cut(s)	262, 778, 819, 1210
BssT1I	CCWWGG	2 cut(s)	110, 408
Bst4CI	ACNGT	4 cut(s)	17, 152, 211, 292
Bst6I	CTCTTC	2 cut(s)	68, 679
BstAFI	CTTAAG	1 cut(s)	445
BstC8I	GCNNGC	2 cut(s)	327, 438
BstDEI	CTNAG	4 cut(s)	80, 182, 622, 785
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	2 cut(s)	707, 994
BstH2I	RGCGCY	3 cut(s)	792, 946, 983
BstHHI	GCGC	3 cut(s)	791, 945, 982
BstKTI	GATC	4 cut(s)	265, 781, 822, 1213
BstMBI	GATC	4 cut(s)	262, 778, 819, 1210
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 627, 797, 991
BstNSI	RCATGY	2 cut(s)	577, 1183
BstSFI	CTRYAG	2 cut(s)	156, 983
BstV1I	GCAGC	4 cut(s)	142, 170, 809, 969
BsuI	GTATCC	1 cut(s)	866
BsuRI	GGCC	7 cut(s)	144, 285, 456, 774, 1018, 1131, 1158
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	707, 994
BtsIMutI	CAGTG	3 cut(s)	145, 157, 630
Cac8I	GCNNGC	2 cut(s)	327, 438
CciI	TCATGA	1 cut(s)	885
CfoI	GCGC	3 cut(s)	791, 945, 982
Cfr13I	GGNCC	2 cut(s)	772, 1157
CseI	GACGC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	358
CspCI	CAANNNNNGTGG	2 cut(s)	509, 544
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	4 cut(s)	80, 182, 622, 785
DpnI	GATC	4 cut(s)	264, 780, 821, 1212
DpnII	GATC	4 cut(s)	262, 778, 819, 1210
EaeI	YGGCCR	4 cut(s)	283, 454, 1016, 1129
Eam1104I	CTCTTC	2 cut(s)	68, 679
EarI	CTCTTC	2 cut(s)	68, 679
Eco130I	CCWWGG	2 cut(s)	110, 408
Eco32I	GATATC	1 cut(s)	1054
EcoRV	GATATC	1 cut(s)	1054
EcoT14I	CCWWGG	2 cut(s)	110, 408
ErhI	CCWWGG	2 cut(s)	110, 408
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FbaI	TGATCA	1 cut(s)	819
Fnu4HI	GCNGC	5 cut(s)	156, 159, 798, 983, 1019
FokI	GGATG	2 cut(s)	694, 1001
Fsp4HI	GCNGC	5 cut(s)	156, 159, 798, 983, 1019
FspBI	CTAG	3 cut(s)	279, 326, 579
GlaI	GCGC	3 cut(s)	790, 944, 981
GluI	GCNGC	5 cut(s)	156, 159, 798, 983, 1019
GsaI	CCCAGC	1 cut(s)	1199
HaeII	RGCGCY	3 cut(s)	792, 946, 983
HaeIII	GGCC	7 cut(s)	144, 285, 456, 774, 1018, 1131, 1158
HapII	CCGG	1 cut(s)	900
HgaI	GACGC	1 cut(s)	372
HhaI	GCGC	3 cut(s)	791, 945, 982
Hin6I	GCGC	3 cut(s)	789, 943, 980
HinP1I	GCGC	3 cut(s)	789, 943, 980
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	7 cut(s)	223, 384, 391, 882, 903, 1040, 1142
HpaII	CCGG	1 cut(s)	900
Hpy166II	GTNNAC	2 cut(s)	352, 423
Hpy188I	TCNGA	5 cut(s)	35, 185, 370, 840, 963
Hpy188III	TCNNGA	4 cut(s)	125, 388, 395, 886
Hpy8I	GTNNAC	2 cut(s)	352, 423
HpyAV	CCTTC	3 cut(s)	482, 688, 935
HpyCH4III	ACNGT	4 cut(s)	17, 152, 211, 292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 627, 797, 991
HpyF3I	CTNAG	4 cut(s)	80, 182, 622, 785
HspAI	GCGC	3 cut(s)	789, 943, 980
Ksp22I	TGATCA	1 cut(s)	819
Kzo9I	GATC	4 cut(s)	262, 778, 819, 1210
LmnI	GCTCC	2 cut(s)	815, 866
Lsp1109I	GCAGC	4 cut(s)	142, 170, 809, 969
LweI	GCATC	1 cut(s)	716
MaeI	CTAG	3 cut(s)	279, 326, 579
MalI	GATC	4 cut(s)	264, 780, 821, 1212
MboI	GATC	4 cut(s)	262, 778, 819, 1210
MboII	GAAGA	7 cut(s)	82, 85, 157, 210, 666, 773, 898
MfeI	CAATTG	2 cut(s)	702, 1009
MhlI	GDGCHC	1 cut(s)	22
MlsI	TGGCCA	2 cut(s)	285, 456
MluCI	AATT	7 cut(s)	651, 664, 702, 861, 1009, 1077, 1086
MluNI	TGGCCA	2 cut(s)	285, 456
MlyI	GAGTC	1 cut(s)	1034
MmeI	TCCRAC	1 cut(s)	780
Mox20I	TGGCCA	2 cut(s)	285, 456
MroXI	GAANNNNTTC	1 cut(s)	563
MscI	TGGCCA	2 cut(s)	285, 456
MseI	TTAA	3 cut(s)	446, 650, 848
MslI	CAYNNNNRTG	1 cut(s)	890
Msp20I	TGGCCA	2 cut(s)	285, 456
MspA1I	CMGCKG	1 cut(s)	800
MspCI	CTTAAG	1 cut(s)	445
MspI	CCGG	1 cut(s)	900
MunI	CAATTG	2 cut(s)	702, 1009
Mva1269I	GAATGC	1 cut(s)	742
MwoI	GCNNNNNNNGC	4 cut(s)	314, 627, 797, 991
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	4 cut(s)	262, 778, 819, 1210
NheI	GCTAGC	1 cut(s)	325
NspI	RCATGY	2 cut(s)	577, 1183
PagI	TCATGA	1 cut(s)	885
PciI	ACATGT	1 cut(s)	573
PctI	GAATGC	1 cut(s)	742
PdmI	GAANNNNTTC	1 cut(s)	563
PfeI	GAWTC	6 cut(s)	223, 384, 391, 882, 903, 1142
PkrI	GCNGC	5 cut(s)	157, 160, 799, 984, 1020
PleI	GAGTC	1 cut(s)	1034
PpsI	GAGTC	1 cut(s)	1034
PscI	ACATGT	1 cut(s)	573
PspFI	CCCAGC	1 cut(s)	1195
PspPI	GGNCC	2 cut(s)	772, 1157
PstI	CTGCAG	2 cut(s)	160, 987
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	890
SaqAI	TTAA	3 cut(s)	446, 650, 848
SatI	GCNGC	5 cut(s)	156, 159, 798, 983, 1019
Sau3AI	GATC	4 cut(s)	262, 778, 819, 1210
Sau96I	GGNCC	2 cut(s)	772, 1157
SchI	GAGTC	1 cut(s)	1034
SduI	GDGCHC	1 cut(s)	22
SfaNI	GCATC	1 cut(s)	716
SfcI	CTRYAG	2 cut(s)	156, 983
SmiMI	CAYNNNNRTG	1 cut(s)	890
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	7 cut(s)	651, 664, 702, 861, 1009, 1077, 1086
SsiI	CCGC	2 cut(s)	800, 1019
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	3 cut(s)	279, 326, 579
StyI	CCWWGG	2 cut(s)	110, 408
TaaI	ACNGT	4 cut(s)	17, 152, 211, 292
TaqI	TCGA	5 cut(s)	93, 126, 147, 221, 394
TasI	AATT	7 cut(s)	651, 664, 702, 861, 1009, 1077, 1086
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	1021
TfiI	GAWTC	6 cut(s)	223, 384, 391, 882, 903, 1142
Tru1I	TTAA	3 cut(s)	446, 650, 848
Tru9I	TTAA	3 cut(s)	446, 650, 848
TscAI	CASTG	3 cut(s)	145, 157, 630
TseI	GCWGC	4 cut(s)	155, 158, 797, 982
TspDTI	ATGAA	6 cut(s)	215, 483, 598, 757, 904, 945
TspGWI	ACGGA	1 cut(s)	1134
TspRI	CASTG	3 cut(s)	145, 157, 630
Vha464I	CTTAAG	1 cut(s)	445
XapI	RAATTY	1 cut(s)	664
XceI	RCATGY	2 cut(s)	577, 1183
XmnI	GAANNNNTTC	1 cut(s)	563
XspI	CTAG	3 cut(s)	279, 326, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.