RchiOBHm_Chr5g0082841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013150
Physical Location & Seq
Reverse (-)
88694509 .. 88696606
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1230 bp
ATGGAGTCCATTTCCTTAAGGCATGCAATCTCTGCAACACATCACACCTATCTCAGGAGAACAAGAGTAAACCCAGAAAAGCCATTTCAGACAAAAAGGTTTCACCTTCACAACCCAACTGGCCGTTTTCAAATCCATTCCAAACTCTCCGATTTCCAAGACTATGCAAAGCCTTCACGCCTATTGCAAGCCACAGAAGTGAATGTCTGCACAGATACGTCAGTGGAAAAAAGCTTCTTGTCATTAAGGGATTATGAATGTCAGGCTTTATATAAGGTCAAGCTAGGTACTAGTAATGCTTATGGTTCAAGTCTCTCCGACCTTACTGCTGGAATCCTCCTGTGCATGATAGACGAAAATGGTAACTCCATACTACAGAGGATACCCTCGAATTTGAGACCGGATGAATCTAAAGAAGTAGAGGATGAGATAATTCAGTTTCAAAGAGGTTCTGTTGATGAGTTCACCTTTAAGGGACCTAAACTTGGAAAAGTTGAAGCTCTTTGGATCAGTCTTGAATCAGGCCAATGGAGGTTAGGAAGTGTGAACTTGACTGTTATATATGCGAATCATATGTCTTTGGAGGAAACAGATGGAGAGGAACCTCAGTATATTGGTTTCGATTACCACTTCCAAGCTGAGGACATCTTGCTCGGAGAGGGAAGTGACAGCTCCATGGTGGAACTTCGACCTTGCCTTGTCACCAAGCTATCTGGGGTTGACCCCTTCACCATGTTGACTAAAAGCCTCCCTGAATCAACTCTATCCGAAAGCCGTGGGATATCAAACGAGGAAACCATGAGAGAATACGCGGATTTGAAGTTCTCTTTGCTACTTTACGATGCCATACTGGTCTTGGTTGGTACATCAGTTGCATCCTTTTCAGTTGGGGAAAATGCCGGTTCTGCATTTTTAACAGGTGGGATTGGTGGCTTCTTGTATCTTCTTCTACTGCAGAGGTCAGTTGATGGATTACCTATTCCAGAATCAATTTCCGTGGACAGCAAAAGCACCAATCAAATGTTTGGAGGAATGAAGAGGCCAATCTTTGGCCTTGCATTGGCTCTTGGTTTTGCTTTATTTACAGTGAAGTATAGCTCTGGGGATGTCCCAATGGTTTTCACAGCAAAAGAAGTCTTGGCTGGGATGGTGGGATTTCTTGCATGTAAAGTTGCTGTGGTTTTGGCAGCAATTAAGCCCATGACAATAGACCTAAAGATAAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

409

Amino Acids

45.09

Weight (kDa)

5.41

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7755 PF24938 89 - 235 9.5e-64 Domain of unknown function (DUF7755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55280 AT1G55280
fragaria_vesca FvH4_3g45230
malus_domestica MD03G1007100.v1.1
prunus_persica Prupe.6G006700_v2.0.a1
pyrus_communis pycom03g00720
rosa_chinensis RchiOBHm_Chr5g0082841
rosa_laevigata RLG00000036994
rosa_multiflora Rmu_sc0001381.1_g000013 Rmu_sc0007172.1_g000002
rosa_roxburghii Rroxscaffold_1G00001590
rosa_rugosa Rorug05G0480300
rosa_samantha Rh5AG530600 Rh5AG530700 Rh5BG557600 Rh5CG580600 Rh5DG565900
rosa_wichuraiana Rw5G049800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1049
AccII CGCG 1 cut(s) 812
AciI CCGC 1 cut(s) 812
AclWI GGATC 1 cut(s) 515
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 1 cut(s) 391
AfaI GTAC 2 cut(s) 289, 865
AfiI CCNNNNNNNGG 5 cut(s) 54, 485, 640, 1049, 1060
AflII CTTAAG 1 cut(s) 16
AgsI TTSAA 6 cut(s) 131, 309, 443, 497, 518, 820
AhlI ACTAGT 1 cut(s) 290
AleI CACNNNNGTG 1 cut(s) 197
AloI GAACNNNNNNTCC 2 cut(s) 806, 838
AluBI AGCT 7 cut(s) 234, 283, 500, 638, 672, 709, 1098
AluI AGCT 7 cut(s) 234, 283, 500, 638, 672, 709, 1098
Alw26I GTCTC 2 cut(s) 317, 391
AlwI GGATC 1 cut(s) 515
AoxI GGCC 4 cut(s) 121, 523, 1040, 1051
ApeKI GCWGC 1 cut(s) 1187
ApoI RAATTY 1 cut(s) 391
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
AspS9I GGNCC 1 cut(s) 476
AsuHPI GGTGA 4 cut(s) 95, 457, 694, 721
AvaII GGWCC 1 cut(s) 476
BaeI ACNNNNGTAYC 4 cut(s) 207, 240, 855, 888
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 1 cut(s) 1199
BccI CCATC 3 cut(s) 587, 962, 1141
BceAI ACGGC 2 cut(s) 108, 759
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciVI GTATCC 1 cut(s) 375
BcoDI GTCTC 2 cut(s) 317, 391
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 2 cut(s) 284, 291
BfmI CTRYAG 2 cut(s) 374, 953
BfrI CTTAAG 1 cut(s) 16
BfuI GTATCC 1 cut(s) 375
BisI GCNGC 1 cut(s) 1188
BlsI GCNGC 1 cut(s) 1189
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 2 cut(s) 477, 603
BmsI GCATC 2 cut(s) 832, 884
Bpu10I CCTNAGC 1 cut(s) 639
BsaI GGTCTC 1 cut(s) 391
BsaJI CCNNGG 3 cut(s) 675, 775, 996
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 485, 640, 1049, 1060
Bse118I RCCGGY 1 cut(s) 899
Bse1I ACTGG 2 cut(s) 124, 855
BseDI CCNNGG 3 cut(s) 675, 775, 996
BseGI GGATG 5 cut(s) 409, 430, 875, 1111, 1152
BseLI CCNNNNNNNGG 5 cut(s) 54, 485, 640, 1049, 1060
BseMII CTCAG 3 cut(s) 67, 620, 630
BseNI ACTGG 2 cut(s) 124, 855
BseXI GCAGC 1 cut(s) 1199
BseYI CCCAGC 1 cut(s) 1142
BsgI GTGCAG 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 812
BshFI GGCC 4 cut(s) 123, 525, 1042, 1053
BsiSI CCGG 2 cut(s) 401, 900
BslFI GGGAC 2 cut(s) 489, 1094
BslI CCNNNNNNNGG 5 cut(s) 54, 485, 640, 1049, 1060
BsmAI GTCTC 2 cut(s) 317, 391
BsmFI GGGAC 2 cut(s) 489, 1094
BsnI GGCC 4 cut(s) 123, 525, 1042, 1053
Bso31I GGTCTC 1 cut(s) 391
Bsp143I GATC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 1 cut(s) 812
BspANI GGCC 4 cut(s) 123, 525, 1042, 1053
BspCNI CTCAG 3 cut(s) 66, 619, 631
BspFNI CGCG 1 cut(s) 812
BspLI GGNNCC 2 cut(s) 477, 603
BspMAI CTGCAG 1 cut(s) 957
BspPI GGATC 1 cut(s) 515
BspTI CTTAAG 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 391
BsrFI RCCGGY 1 cut(s) 899
BsrI ACTGG 2 cut(s) 124, 855
BssAI RCCGGY 1 cut(s) 899
BssECI CCNNGG 3 cut(s) 675, 775, 996
BssMI GATC 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 675
Bst4CI ACNGT 2 cut(s) 556, 1087
Bst6I CTCTTC 1 cut(s) 1031
BstAFI CTTAAG 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 24, 189
BstDEI CTNAG 3 cut(s) 53, 606, 639
BstDSI CCRYGG 3 cut(s) 675, 775, 996
BstENI CCTNNNNNAGG 1 cut(s) 52
BstF5I GGATG 5 cut(s) 409, 430, 875, 1111, 1152
BstFNI CGCG 1 cut(s) 812
BstKTI GATC 1 cut(s) 510
BstMAI GTCTC 2 cut(s) 317, 391
BstMBI GATC 1 cut(s) 507
BstMWI GCNNNNNNNGC 2 cut(s) 32, 905
BstNSI RCATGY 2 cut(s) 26, 1167
BstSFI CTRYAG 2 cut(s) 374, 953
BstUI CGCG 1 cut(s) 812
BstV1I GCAGC 1 cut(s) 1199
BsuI GTATCC 1 cut(s) 375
BsuRI GGCC 4 cut(s) 123, 525, 1042, 1053
BtgI CCRYGG 3 cut(s) 675, 775, 996
BtsCI GGATG 5 cut(s) 409, 430, 875, 1111, 1152
BtsIMutI CAGTG 2 cut(s) 228, 1092
Cac8I GCNNGC 2 cut(s) 24, 189
Cfr10I RCCGGY 1 cut(s) 899
Cfr13I GGNCC 1 cut(s) 476
Csp6I GTAC 2 cut(s) 288, 864
CspCI CAANNNNNGTGG 2 cut(s) 978, 1013
CviAII CATG 7 cut(s) 23, 346, 676, 733, 799, 1164, 1201
CviQI GTAC 2 cut(s) 288, 864
DdeI CTNAG 3 cut(s) 53, 606, 639
DpnI GATC 1 cut(s) 509
DpnII GATC 1 cut(s) 507
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 1031
EarI CTCTTC 1 cut(s) 1031
Eco130I CCWWGG 1 cut(s) 675
Eco31I GGTCTC 1 cut(s) 391
Eco32I GATATC 1 cut(s) 783
Eco47I GGWCC 1 cut(s) 476
EcoNI CCTNNNNNAGG 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 476
EcoRV GATATC 1 cut(s) 783
EcoT14I CCWWGG 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 7 cut(s) 26, 349, 679, 736, 802, 1167, 1204
FaqI GGGAC 2 cut(s) 489, 1094
FatI CATG 7 cut(s) 22, 345, 675, 732, 798, 1163, 1200
FauNDI CATATG 1 cut(s) 573
Fnu4HI GCNGC 1 cut(s) 1188
FokI GGATG 5 cut(s) 416, 437, 862, 1118, 1159
Fsp4HI GCNGC 1 cut(s) 1188
FspBI CTAG 2 cut(s) 284, 291
GluI GCNGC 1 cut(s) 1188
GsaI CCCAGC 1 cut(s) 1146
HaeIII GGCC 4 cut(s) 123, 525, 1042, 1053
HapII CCGG 2 cut(s) 401, 900
Hin1II CATG 7 cut(s) 26, 349, 679, 736, 802, 1167, 1204
HincII GTYRAC 2 cut(s) 721, 738
HindII GTYRAC 2 cut(s) 721, 738
HindIII AAGCTT 1 cut(s) 232
HinfI GANTC 7 cut(s) 5, 333, 407, 518, 568, 755, 986
HpaII CCGG 2 cut(s) 401, 900
HphI GGTGA 4 cut(s) 95, 457, 694, 721
Hpy166II GTNNAC 6 cut(s) 70, 465, 547, 721, 738, 1000
Hpy188I TCNGA 5 cut(s) 90, 151, 319, 656, 769
Hpy188III TCNNGA 3 cut(s) 55, 515, 983
Hpy8I GTNNAC 6 cut(s) 70, 465, 547, 721, 738, 1000
HpyAV CCTTC 3 cut(s) 116, 183, 736
HpyCH4III ACNGT 2 cut(s) 556, 1087
HpyCH4IV ACGT 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 905
HpyF3I CTNAG 3 cut(s) 53, 606, 639
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 7 cut(s) 26, 349, 679, 736, 802, 1167, 1204
Kzo9I GATC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 677
Lsp1109I GCAGC 1 cut(s) 1199
LweI GCATC 2 cut(s) 832, 884
MaeI CTAG 2 cut(s) 284, 291
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 3 cut(s) 362, 665, 700
MalI GATC 1 cut(s) 509
MboI GATC 1 cut(s) 507
MboII GAAGA 3 cut(s) 935, 938, 1048
MluCI AATT 4 cut(s) 391, 432, 990, 1191
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 342
MseI TTAA 5 cut(s) 17, 245, 471, 914, 1194
MslI CAYNNNNRTG 1 cut(s) 197
MspCI CTTAAG 1 cut(s) 16
MspI CCGG 2 cut(s) 401, 900
MvnI CGCG 1 cut(s) 812
MwoI GCNNNNNNNGC 2 cut(s) 32, 905
NcoI CCATGG 1 cut(s) 675
NdeI CATATG 1 cut(s) 573
NdeII GATC 1 cut(s) 507
NlaIII CATG 7 cut(s) 26, 349, 679, 736, 802, 1167, 1204
NlaIV GGNNCC 2 cut(s) 477, 603
NmuCI GTSAC 2 cut(s) 665, 700
NspI RCATGY 2 cut(s) 26, 1167
OliI CACNNNNGTG 1 cut(s) 197
PaeI GCATGC 1 cut(s) 26
PfeI GAWTC 6 cut(s) 333, 407, 518, 568, 755, 986
PflMI CCANNNNNTGG 1 cut(s) 1049
PkrI GCNGC 1 cut(s) 1189
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 476
PspFI CCCAGC 1 cut(s) 1142
PspN4I GGNNCC 2 cut(s) 477, 603
PspPI GGNCC 1 cut(s) 476
PspPPI RGGWCCY 1 cut(s) 476
PstI CTGCAG 1 cut(s) 957
RsaI GTAC 2 cut(s) 289, 865
RsaNI GTAC 2 cut(s) 288, 864
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 5 cut(s) 17, 245, 471, 914, 1194
SatI GCNGC 1 cut(s) 1188
Sau3AI GATC 1 cut(s) 507
Sau96I GGNCC 1 cut(s) 476
SchI GAGTC 1 cut(s) 14
SfaNI GCATC 2 cut(s) 832, 884
SfcI CTRYAG 2 cut(s) 374, 953
SinI GGWCC 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SpeI ACTAGT 1 cut(s) 290
SphI GCATGC 1 cut(s) 26
Sse9I AATT 4 cut(s) 391, 432, 990, 1191
SsiI CCGC 1 cut(s) 812
SspMI CTAG 2 cut(s) 284, 291
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 2 cut(s) 556, 1087
TaiI ACGT 1 cut(s) 221
TaqI TCGA 3 cut(s) 389, 621, 688
TasI AATT 4 cut(s) 391, 432, 990, 1191
TfiI GAWTC 6 cut(s) 333, 407, 518, 568, 755, 986
Tru1I TTAA 5 cut(s) 17, 245, 471, 914, 1194
Tru9I TTAA 5 cut(s) 17, 245, 471, 914, 1194
TscAI CASTG 2 cut(s) 228, 1092
TseFI GTSAC 2 cut(s) 665, 700
TseI GCWGC 1 cut(s) 1187
Tsp45I GTSAC 2 cut(s) 665, 700
TspDTI ATGAA 3 cut(s) 270, 420, 1049
TspGWI ACGGA 1 cut(s) 985
TspRI CASTG 2 cut(s) 228, 1092
Van91I CCANNNNNTGG 1 cut(s) 1049
Vha464I CTTAAG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 476
XagI CCTNNNNNAGG 1 cut(s) 52
XapI RAATTY 1 cut(s) 391
XceI RCATGY 2 cut(s) 26, 1167
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XspI CTAG 2 cut(s) 284, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.