RchiOBHm_Chr4g0388851
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009607
Physical Location & Seq
Reverse (-)
4025990 .. 4027966
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGGGGGCGTTCATATCGAGGTTTTGGTTCATGTTGTTTCCTGCAAAAGAGTATAAGATTGTGGTTGTTGGGTTGGACAATGCTGGGAAGACAACTACCCTTTACAAATTGCACTTGGGAGAGGTTGTCACTACGAACCCGACTGTAGGCAGCAATGTCGAAGAGCTTGTCTACAAGAACATTCGCTTTGAGGTACTGTGTGGGATCTGGGTGGACAAGATAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf

Protein Analysis

75

Amino Acids

8.53

Weight (kDa)

6.55

Isoelectric Point (pI)

7.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 13 - 65 9.4e-19 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AclWI GGATC 1 cut(s) 212
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 146
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AlwI GGATC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 150
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 162
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 162
BseYI CCCAGC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 146
Bsp143I GATC 1 cut(s) 204
BspPI GGATC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 160
BssMI GATC 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 145, 198
Bst6I CTCTTC 1 cut(s) 156
BstKTI GATC 1 cut(s) 207
BstMBI GATC 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
Csp6I GTAC 1 cut(s) 194
CviAII CATG 1 cut(s) 31
CviJI RGCY 1 cut(s) 166
CviKI_1 RGCY 1 cut(s) 166
CviQI GTAC 1 cut(s) 194
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 14, 32, 54
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 151
GsaI CCCAGC 1 cut(s) 87
Hin1II CATG 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 172, 214
Hpy8I GTNNAC 2 cut(s) 172, 214
HpyCH4III ACNGT 2 cut(s) 145, 198
HpyCH4V TGCA 2 cut(s) 44, 112
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 1 cut(s) 204
LguI GCTCTTC 1 cut(s) 156
LpnPI CCDG 3 cut(s) 54, 69, 193
Lsp1109I GCAGC 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 2 cut(s) 100, 173
MflI RGATCY 1 cut(s) 204
MluCI AATT 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 3 cut(s) 12, 115, 184
NdeII GATC 1 cut(s) 204
NlaIII CATG 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 156
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 1 cut(s) 204
SetI ASST 4 cut(s) 23, 126, 168, 195
SfcI CTRYAG 1 cut(s) 144
SgeI CNNG 9 cut(s) 30, 43, 53, 96, 127, 151, 179, 187, 220
Sse9I AATT 1 cut(s) 107
TaaI ACNGT 2 cut(s) 145, 198
TaqI TCGA 2 cut(s) 17, 159
TasI AATT 1 cut(s) 107
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.