RchiOBHm_Chr4g0399921

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017135
Physical Location & Seq
Reverse (-)
17221037 .. 17222410
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1374 bp
ATGGCAACCGCAGTCGCAGAACTTGTTAGGCTCTCTCTTATTACTTTCCTTTTAACCTCACACAGTTTATGCTTAACCGCCAACCCTGCCACAACCTCTACCGTCACAAAACCAAAGCGTTTTGTCACAAAACTCATTCACCATGATTCGGCTTTGTCTCCTTACTATAATCCTAATGCAAGCATTAGAGATATTGTTTCACGCTTAGTGAAAAGCTCTGCGGCACGCTTCACATACCTAAAAGCAAAGAGTACTAATGCTTTTGTGATGGACGATACACGTGCTGGTGTTGTTCCGGAGAAGTCTGCAACAGAGTTTATGGCAAATTTCTCATTTGGAGAGCCACCAGTTCCACAGCTTTTGGCAATGGATACCGGCAGCAACTTATTGTGGGTTCACTGCCTGCCTTGCACCAAGTGTTTTAAACAATCCAATCCGATTTTTGATCCTTCCAAGTCCTCCACATACAAAACCTTGCCATGCGCATCTCCCGATTGTATTCAGTCGAGCCCTGGTGATAAGTGTGATTCCTCAAACAATTGCATATTCCTTCAGAAGTACCTTGATGGCACTGCGGCGGCAGGACTTATGGCGACTGAAAAGCTCACCTTCGAGACATCTGACGAAGGGCTTAGCCCCGTCTCCGATGCAGTTTTTGGCTGTGCACATGAGAGTATTGCTGACTACGATGGACAAATAAGTGGAGTACTTGGTCTTGGCCCTTCAGAAATATCTTTGACAACCAAGTTAGGCTCCAAGTTTTCTTATTGCATTGGAAGCATAAGGGACCCTAACTACCCTCACAACCAATTGATCTTCGGTGAGGGTACAAAGATAGAAGGGGCAGCAACCCCCCTTGAACTGTACAATGAACTTTACTATCTAACCCTGGAGGGCATCAGCCTCGGTCAGTCCCGCCTCCAAATTGATCCAAAAGTATTCACTAGATCACCATCAGGAACTGGTGGAACGGTTATCGACTCCGGAACTACACTAAGTTTCGTGGTTAAAAGTGCATATGATGTACTCAGTGCTGAAGTGCAAAAATTAGCAAACGGAATATTAGAACGTGTCCAAGATCCTGATACGCCCACAGCTCTTTGCTACAAAGGGACAATAGACCGAGACCTTGTTGGTTTTCCAGGTGCAACGTTTCACCTGGCAGGAGGGGTTGATTTGTTTCTGGACAAAACGAGCCTCTTCCAGGTTACTGGTGAGAATGAGTTCTGCTTAGCCGTGCAAATGCTAGAGGGCATGGGTGAAGGATTGAATGTTATTGGAATTCTGGCACAGCAAAATTATAATGTTGCATATGACATTGCCGCAGAGAAGGTTTATTTCCAGTACATTGACTGTGAGCTTCTTGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

457

Amino Acids

49.3

Weight (kDa)

4.94

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 106 - 274 1.4e-42 Xylanase inhibitor N-terminal
Asp PF00026 106 - 447 4.4e-09 Eukaryotic aspartyl protease
TAXi_C PF14541 293 - 448 4.1e-29 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23945 AT4G30030 AT4G30040
fragaria_vesca FvH4_4g07480
malus_domestica MD16G1251100.v1.1 MD16G1251300.v1.1
prunus_persica Prupe.1G077600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399921
rosa_rugosa Rorug04G0020200
rosa_samantha Rh4BG094700 Rh4CG106400 Rh4DG091200
rosa_wichuraiana Rw4G008040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1302
Acc16I TGCGCA 1 cut(s) 484
AccIII TCCGGA 2 cut(s) 295, 983
AciI CCGC 7 cut(s) 9, 78, 221, 575, 578, 916, 1323
AclI AACGTT 1 cut(s) 1151
AclWI GGATC 3 cut(s) 440, 923, 1073
AcsI RAATTY 2 cut(s) 325, 1281
AcuI CTGAAG 3 cut(s) 536, 708, 1056
AcvI CACGTG 1 cut(s) 281
AdeI CACNNNGTG 1 cut(s) 417
AfaI GTAC 7 cut(s) 253, 560, 708, 829, 866, 1026, 1346
AfiI CCNNNNNNNGG 2 cut(s) 148, 1204
AflIII ACRYGT 2 cut(s) 278, 1069
AgsI TTSAA 3 cut(s) 860, 1270, 1367
AjnI CCWGG 5 cut(s) 511, 888, 1141, 1158, 1203
AluBI AGCT 5 cut(s) 216, 358, 604, 1097, 1360
AluI AGCT 5 cut(s) 216, 358, 604, 1097, 1360
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 4 cut(s) 162, 608, 646, 1119
Alw44I GTGCAC 1 cut(s) 663
AlwI GGATC 3 cut(s) 440, 923, 1073
AlwNI CAGNNNCTG 1 cut(s) 962
Aor13HI TCCGGA 2 cut(s) 295, 983
AoxI GGCC 1 cut(s) 718
ApaLI GTGCAC 1 cut(s) 663
ApeKI GCWGC 2 cut(s) 378, 845
ApoI RAATTY 2 cut(s) 325, 1281
Asp700I GAANNNNTTC 1 cut(s) 1223
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 2 cut(s) 719, 787
AsuHPI GGTGA 8 cut(s) 131, 527, 598, 833, 942, 1148, 1226, 1271
AvaII GGWCC 1 cut(s) 787
BaeGI GKGCMC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 512
BbrPI CACGTG 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 667
BbvI GCAGC 2 cut(s) 390, 857
BccI CCATC 4 cut(s) 262, 560, 683, 961
BceAI ACGGC 1 cut(s) 1220
BcgI CGANNNNNNTGC 4 cut(s) 263, 297, 886, 920
BciT130I CCWGG 5 cut(s) 513, 890, 1143, 1160, 1205
BciVI GTATCC 1 cut(s) 364
BcoDI GTCTC 4 cut(s) 162, 608, 646, 1119
BfaI CTAG 2 cut(s) 945, 1247
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 6 cut(s) 222, 379, 576, 579, 846, 1323
BlpI GCTNAGC 2 cut(s) 632, 1231
BlsI GCNGC 6 cut(s) 223, 380, 577, 580, 847, 1324
BmcAI AGTACT 2 cut(s) 253, 708
Bme1390I CCNGG 5 cut(s) 513, 890, 1143, 1160, 1205
Bme18I GGWCC 1 cut(s) 787
BmgT120I GGNCC 2 cut(s) 719, 787
BmiI GGNNCC 3 cut(s) 754, 788, 789
BmrFI CCNGG 5 cut(s) 513, 890, 1143, 1160, 1205
BmsI GCATC 3 cut(s) 494, 637, 906
BpmI CTGGAG 1 cut(s) 911
Bpu1102I GCTNAGC 2 cut(s) 632, 1231
BsaAI YACGTR 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 952
BsaI GGTCTC 1 cut(s) 1119
BsaJI CCNNGG 3 cut(s) 511, 888, 904
BsaWI WCCGGW 2 cut(s) 295, 983
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 1204
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 4 cut(s) 347, 967, 1216, 1342
Bse3DI GCAATG 2 cut(s) 372, 1317
Bse8I GATNNNNATC 1 cut(s) 952
BseAI TCCGGA 2 cut(s) 295, 983
BseBI CCWGG 5 cut(s) 513, 890, 1143, 1160, 1205
BseDI CCNNGG 3 cut(s) 511, 888, 904
BseJI GATNNNNATC 1 cut(s) 952
BseLI CCNNNNNNNGG 2 cut(s) 148, 1204
BseMI GCAATG 2 cut(s) 372, 1317
BseMII CTCAG 1 cut(s) 1042
BseNI ACTGG 4 cut(s) 347, 967, 1216, 1342
BseSI GKGCMC 1 cut(s) 667
BseXI GCAGC 2 cut(s) 390, 857
BshFI GGCC 1 cut(s) 720
BsiHKAI GWGCWC 1 cut(s) 667
BsiSI CCGG 3 cut(s) 296, 375, 984
BslFI GGGAC 3 cut(s) 800, 898, 1126
BslI CCNNNNNNNGG 2 cut(s) 148, 1204
BsmAI GTCTC 4 cut(s) 162, 608, 646, 1119
BsmBI CGTCTC 1 cut(s) 646
BsmFI GGGAC 3 cut(s) 800, 898, 1126
BsnI GGCC 1 cut(s) 720
Bso31I GGTCTC 1 cut(s) 1119
Bsp1286I GDGCHC 2 cut(s) 512, 667
Bsp13I TCCGGA 2 cut(s) 295, 983
Bsp1407I TGTACA 1 cut(s) 864
Bsp143I GATC 5 cut(s) 445, 813, 928, 947, 1078
Bsp1720I GCTNAGC 2 cut(s) 632, 1231
BspACI CCGC 7 cut(s) 9, 78, 221, 575, 578, 916, 1323
BspANI GGCC 1 cut(s) 720
BspCNI CTCAG 1 cut(s) 1041
BspEI TCCGGA 2 cut(s) 295, 983
BspLI GGNNCC 3 cut(s) 754, 788, 789
BspPI GGATC 3 cut(s) 440, 923, 1073
BspTNI GGTCTC 1 cut(s) 1119
BsrDI GCAATG 2 cut(s) 372, 1317
BsrFI RCCGGY 1 cut(s) 374
BsrGI TGTACA 1 cut(s) 864
BsrI ACTGG 4 cut(s) 347, 967, 1216, 1342
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 3 cut(s) 511, 888, 904
BssMI GATC 5 cut(s) 445, 813, 928, 947, 1078
Bst2UI CCWGG 5 cut(s) 513, 890, 1143, 1160, 1205
Bst4CI ACNGT 5 cut(s) 65, 103, 864, 973, 1355
Bst6I CTCTTC 1 cut(s) 1205
BstAUI TGTACA 1 cut(s) 864
BstBAI YACGTR 1 cut(s) 281
BstC8I GCNNGC 3 cut(s) 181, 226, 404
BstDEI CTNAG 5 cut(s) 205, 632, 995, 1028, 1231
BstENI CCTNNNNNAGG 1 cut(s) 1202
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 5 cut(s) 448, 816, 931, 950, 1081
BstMAI GTCTC 4 cut(s) 162, 608, 646, 1119
BstMBI GATC 5 cut(s) 445, 813, 928, 947, 1078
BstMWI GCNNNNNNNGC 3 cut(s) 86, 408, 777
BstNI CCWGG 5 cut(s) 513, 890, 1143, 1160, 1205
BstSCI CCNGG 5 cut(s) 511, 888, 1141, 1158, 1203
BstSLI GKGCMC 1 cut(s) 667
BstV1I GCAGC 2 cut(s) 390, 857
BstX2I RGATCY 1 cut(s) 1078
BstXI CCANNNNNNTGG 1 cut(s) 1211
BstYI RGATCY 1 cut(s) 1078
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 720
BtsI GCAGTG 2 cut(s) 397, 570
BtsIMutI CAGTG 3 cut(s) 397, 570, 1036
Cac8I GCNNGC 3 cut(s) 181, 226, 404
CaiI CAGNNNCTG 1 cut(s) 962
CfoI GCGC 1 cut(s) 485
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 2 cut(s) 719, 787
Csp6I GTAC 7 cut(s) 252, 559, 707, 828, 865, 1025, 1345
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 4 cut(s) 143, 480, 668, 1255
CviQI GTAC 7 cut(s) 252, 559, 707, 828, 865, 1025, 1345
DdeI CTNAG 5 cut(s) 205, 632, 995, 1028, 1231
DpnI GATC 5 cut(s) 447, 815, 930, 949, 1080
DpnII GATC 5 cut(s) 445, 813, 928, 947, 1078
DraI TTTAAA 1 cut(s) 424
DraIII CACNNNGTG 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 1205
EarI CTCTTC 1 cut(s) 1205
Eco24I GRGCYC 1 cut(s) 512
Eco31I GGTCTC 1 cut(s) 1119
Eco47I GGWCC 1 cut(s) 787
Eco57I CTGAAG 3 cut(s) 536, 708, 1056
Eco72I CACGTG 1 cut(s) 281
EcoNI CCTNNNNNAGG 1 cut(s) 1202
EcoO109I RGGNCCY 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 1281
EcoRII CCWGG 5 cut(s) 511, 888, 1141, 1158, 1203
EcoT38I GRGCYC 1 cut(s) 512
Esp3I CGTCTC 1 cut(s) 646
FaeI CATG 4 cut(s) 146, 483, 671, 1258
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FaqI GGGAC 3 cut(s) 800, 898, 1126
FatI CATG 4 cut(s) 142, 479, 667, 1254
FauI CCCGC 1 cut(s) 923
FauNDI CATATG 2 cut(s) 1018, 1312
Fnu4HI GCNGC 6 cut(s) 222, 379, 576, 579, 846, 1323
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 6 cut(s) 222, 379, 576, 579, 846, 1323
FspAI RTGCGCAY 1 cut(s) 484
FspBI CTAG 2 cut(s) 945, 1247
FspI TGCGCA 1 cut(s) 484
GlaI GCGC 1 cut(s) 484
GluI GCNGC 6 cut(s) 222, 379, 576, 579, 846, 1323
GsuI CTGGAG 1 cut(s) 911
HaeIII GGCC 1 cut(s) 720
HapII CCGG 3 cut(s) 296, 375, 984
HhaI GCGC 1 cut(s) 485
Hin1II CATG 4 cut(s) 146, 483, 671, 1258
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HinfI GANTC 3 cut(s) 146, 527, 980
HpaII CCGG 3 cut(s) 296, 375, 984
HphI GGTGA 8 cut(s) 131, 527, 598, 833, 942, 1148, 1226, 1271
Hpy166II GTNNAC 2 cut(s) 397, 665
Hpy188I TCNGA 5 cut(s) 438, 555, 622, 646, 727
Hpy188III TCNNGA 8 cut(s) 296, 491, 613, 957, 984, 1082, 1184, 1364
Hpy8I GTNNAC 2 cut(s) 397, 665
HpyAV CCTTC 8 cut(s) 459, 560, 619, 620, 732, 833, 1256, 1324
HpyCH4III ACNGT 5 cut(s) 65, 103, 864, 973, 1355
HpyCH4IV ACGT 3 cut(s) 280, 1069, 1151
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 408, 777
HpyF3I CTNAG 5 cut(s) 205, 632, 995, 1028, 1231
HpySE526I ACGT 3 cut(s) 280, 1069, 1151
Hsp92II CATG 4 cut(s) 146, 483, 671, 1258
HspAI GCGC 1 cut(s) 483
KflI GGGWCCC 1 cut(s) 787
Kpn2I TCCGGA 2 cut(s) 295, 983
Kzo9I GATC 5 cut(s) 445, 813, 928, 947, 1078
LmnI GCTCC 1 cut(s) 758
Lsp1109I GCAGC 2 cut(s) 390, 857
LweI GCATC 3 cut(s) 494, 637, 906
MaeI CTAG 2 cut(s) 945, 1247
MaeII ACGT 3 cut(s) 280, 1069, 1151
MaeIII GTNAC 3 cut(s) 103, 124, 1207
MalI GATC 5 cut(s) 447, 815, 930, 949, 1080
MboI GATC 5 cut(s) 445, 813, 928, 947, 1078
MboII GAAGA 2 cut(s) 808, 1192
MfeI CAATTG 2 cut(s) 538, 809
MflI RGATCY 1 cut(s) 1078
MhlI GDGCHC 2 cut(s) 512, 667
MluCI AATT 8 cut(s) 325, 538, 809, 924, 1046, 1281, 1297, 1369
MlyI GAGTC 1 cut(s) 974
MroI TCCGGA 2 cut(s) 295, 983
MroXI GAANNNNTTC 1 cut(s) 1223
MseI TTAA 4 cut(s) 53, 74, 423, 1008
MspI CCGG 3 cut(s) 296, 375, 984
MspR9I CCNGG 5 cut(s) 513, 890, 1143, 1160, 1205
MunI CAATTG 2 cut(s) 538, 809
MvaI CCWGG 5 cut(s) 513, 890, 1143, 1160, 1205
MwoI GCNNNNNNNGC 3 cut(s) 86, 408, 777
NdeI CATATG 2 cut(s) 1018, 1312
NdeII GATC 5 cut(s) 445, 813, 928, 947, 1078
NlaIII CATG 4 cut(s) 146, 483, 671, 1258
NlaIV GGNNCC 3 cut(s) 754, 788, 789
NmuCI GTSAC 2 cut(s) 103, 124
NsbI TGCGCA 1 cut(s) 484
PdmI GAANNNNTTC 1 cut(s) 1223
PfeI GAWTC 2 cut(s) 146, 527
PkrI GCNGC 6 cut(s) 223, 380, 577, 580, 847, 1324
PleI GAGTC 1 cut(s) 974
PmaCI CACGTG 1 cut(s) 281
PmlI CACGTG 1 cut(s) 281
PpsI GAGTC 1 cut(s) 974
Ppu21I YACGTR 1 cut(s) 281
PpuMI RGGWCCY 1 cut(s) 787
PsiI TTATAA 1 cut(s) 1302
Psp1406I AACGTT 1 cut(s) 1151
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 5 cut(s) 511, 888, 1141, 1158, 1203
PspCI CACGTG 1 cut(s) 281
PspGI CCWGG 5 cut(s) 511, 888, 1141, 1158, 1203
PspN4I GGNNCC 3 cut(s) 754, 788, 789
PspPI GGNCC 2 cut(s) 719, 787
PspPPI RGGWCCY 1 cut(s) 787
PstNI CAGNNNCTG 1 cut(s) 962
PsuI RGATCY 1 cut(s) 1078
RsaI GTAC 7 cut(s) 253, 560, 708, 829, 866, 1026, 1346
RsaNI GTAC 7 cut(s) 252, 559, 707, 828, 865, 1025, 1345
SaqAI TTAA 4 cut(s) 53, 74, 423, 1008
SatI GCNGC 6 cut(s) 222, 379, 576, 579, 846, 1323
Sau3AI GATC 5 cut(s) 445, 813, 928, 947, 1078
Sau96I GGNCC 2 cut(s) 719, 787
ScaI AGTACT 2 cut(s) 253, 708
SchI GAGTC 1 cut(s) 974
ScrFI CCNGG 5 cut(s) 513, 890, 1143, 1160, 1205
SduI GDGCHC 2 cut(s) 512, 667
SfaNI GCATC 3 cut(s) 494, 637, 906
SinI GGWCC 1 cut(s) 787
Sse9I AATT 8 cut(s) 325, 538, 809, 924, 1046, 1281, 1297, 1369
SsiI CCGC 7 cut(s) 9, 78, 221, 575, 578, 916, 1323
SspI AATATT 1 cut(s) 1062
SspMI CTAG 2 cut(s) 945, 1247
StyD4I CCNGG 5 cut(s) 511, 888, 1141, 1158, 1203
TaaI ACNGT 5 cut(s) 65, 103, 864, 973, 1355
TaiI ACGT 3 cut(s) 283, 1072, 1154
TaqI TCGA 3 cut(s) 506, 612, 978
TaqII GACCGA 2 cut(s) 896, 1137
TasI AATT 8 cut(s) 325, 538, 809, 924, 1046, 1281, 1297, 1369
TatI WGTACW 5 cut(s) 251, 706, 864, 1024, 1344
TauI GCSGC 4 cut(s) 224, 578, 581, 1325
TfiI GAWTC 2 cut(s) 146, 527
Tru1I TTAA 4 cut(s) 53, 74, 423, 1008
Tru9I TTAA 4 cut(s) 53, 74, 423, 1008
TscAI CASTG 3 cut(s) 404, 577, 1036
TseFI GTSAC 2 cut(s) 103, 124
TseI GCWGC 2 cut(s) 378, 845
Tsp45I GTSAC 2 cut(s) 103, 124
TspDTI ATGAA 1 cut(s) 885
TspGWI ACGGA 1 cut(s) 1071
TspRI CASTG 3 cut(s) 404, 577, 1036
VneI GTGCAC 1 cut(s) 663
VpaK11BI GGWCC 1 cut(s) 787
XagI CCTNNNNNAGG 1 cut(s) 1202
XapI RAATTY 2 cut(s) 325, 1281
XmnI GAANNNNTTC 1 cut(s) 1223
XspI CTAG 2 cut(s) 945, 1247
ZrmI AGTACT 2 cut(s) 253, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.