RchiOBHm_Chr4g0407081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017148
Physical Location & Seq
Forward (+)
29198554 .. 29199801
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1248 bp
ATGAAGACAAGTAATATTGATCAGAGAGAAGATGAGTATTGTGTCAGACTAAGATCAATTGGTGCTTATCAAAATGAACCTAGTACCAAAAAACATGATCCTATGTGCAAAAGCAGCAACAAGGAAAAGTCTGTTGCTGCCGTACTTTCCCATTCATCGGAGAAGGAACACCATATTGATAATCAGTTGGGTAAAGAGAGAAGTTTTAGTGATAAAGAGTCGATGTGGTTGTCTTCAGATTGTTCATCACCTTCTGCATTTTTCAGGGAGTATAGATGGTCTGGTTCCTTTCATCTCTCACTTGATGAACACAAGAATGTACACACAGATTTGATGGATGAAAAAGTAGCGAGTCGACTACTTAGTTCAGCTATGAATGATGCAAAACCAAGAGAGTCGTTGTGTGATGACTCAACAAGTTGTGGAAACTCTTCAGCTCCTCTTAGCAGCACACCTAGTTCCTCTCAGATTTTAGATTTGGAGAGAATAGGTTATCAAGTATCTTTGTTGAATCTTGATGGGGATGATTACAAATGGATTCCAGATACAGAAGTTGAGTCATATTGTCTTCAATATGCTTTTCACTCTCCATCATACAAGACTAGGTCGGATCACGAGGCTGAGTTCACTAATTCTTGTATTTCTACAGCGACTGAAGCACAAAATGAAAAACCAGGATATTGTTTTCCATCAGATCAAGCTTCAAAAGCTGTAGAGGTTGAAGAGTTGAACACAAATGAACCTCTTTTTTGGCCATTTGCTCAAAAAATTGATTGGAGTGCCGAAGCAACTTGGAACTGTTTTTCCATGTCACCGCGGAAGAGCATAGCAACTATTGGAACTCCACTTGATTCAATTATATTAAGGCGTTATAGGGGCAGCATGGATCTCAAACAAGAGCGTAGGAGAAAACTAGTGTTTAGCTTAGGATCAACAACATCAAAGATACCAGATATGAAGCAAAGCTACACCAAGGGTATCAAGGATATCCGAGAGATCTGTAATGCCCCTTCGAGGTTGAGCAGGGTAACCAAAAGGACTGAAAAAGACAATATTTTAGAACATCAAAATAAAGAAGTAACTATAAAAAAACCAGTTGTTATGGCTGAAGATATCATGGAAGAAGATTTTGAATCAAAACAACATGGGATTGAGATGTTCTTGGGCCTTGATGAGTTTGATGGTCACGAGGGAATTGATTTAACATTTAACAAAGATGATTTCTCACTGAACATATCTTTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

47.25

Weight (kDa)

5.3

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05894 AT2G31480
prunus_persica Prupe.1G190600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407081
rosa_laevigata RLG00000008738
rosa_multiflora Rmu_sc0000600.1_g000001
rosa_roxburghii Rroxscaffold_5G00351810
rosa_rugosa Rorug04G0077900
rosa_samantha Rh4AG142600 Rh4BG140500 Rh4CG149100 Rh4DG136700
rosa_wichuraiana Rw4G011620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 355
AccII CGCG 1 cut(s) 817
AciI CCGC 2 cut(s) 815, 817
AclWI GGATC 4 cut(s) 92, 618, 894, 937
AcoI YGGCCR 1 cut(s) 752
AcuI CTGAAG 4 cut(s) 219, 417, 675, 1128
AfaI GTAC 3 cut(s) 85, 144, 321
AfiI CCNNNNNNNGG 2 cut(s) 157, 1014
AgsI TTSAA 7 cut(s) 511, 572, 705, 722, 730, 855, 1133
AhlI ACTAGT 1 cut(s) 913
AjnI CCWGG 1 cut(s) 673
AloI GAACNNNNNNTCC 2 cut(s) 788, 820
AluBI AGCT 6 cut(s) 371, 437, 701, 710, 924, 966
AluI AGCT 6 cut(s) 371, 437, 701, 710, 924, 966
AlwI GGATC 4 cut(s) 92, 618, 894, 937
AlwNI CAGNNNCTG 1 cut(s) 653
AoxI GGCC 2 cut(s) 752, 1165
ApeKI GCWGC 4 cut(s) 114, 137, 447, 879
Asp700I GAANNNNTTC 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 1165
AsuHPI GGTGA 2 cut(s) 240, 804
BaeI ACNNNNGTAYC 2 cut(s) 537, 570
BalI TGGCCA 1 cut(s) 754
BarI GAAGNNNNNNTAC 4 cut(s) 950, 982, 994, 1026
BauI CACGAG 2 cut(s) 614, 1187
BbsI GAAGAC 3 cut(s) 11, 225, 560
BbvI GCAGC 4 cut(s) 124, 126, 459, 891
BccI CCATC 6 cut(s) 270, 328, 512, 598, 697, 1175
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 675
BclI TGATCA 1 cut(s) 19
BcuI ACTAGT 1 cut(s) 913
BfaI CTAG 4 cut(s) 81, 456, 603, 914
BfmI CTRYAG 2 cut(s) 645, 711
BglII AGATCT 1 cut(s) 996
BisI GCNGC 4 cut(s) 115, 138, 448, 880
BlsI GCNGC 4 cut(s) 116, 139, 449, 881
Bme1390I CCNGG 1 cut(s) 675
BmgT120I GGNCC 1 cut(s) 1165
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 3 cut(s) 11, 225, 560
Bpu10I CCTNAGC 1 cut(s) 925
BsaJI CCNNGG 2 cut(s) 815, 972
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 1014
Bse1I ACTGG 1 cut(s) 1094
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 2 cut(s) 815, 972
BseGI GGATG 2 cut(s) 343, 529
BseLI CCNNNNNNNGG 2 cut(s) 157, 1014
BseMII CTCAG 2 cut(s) 479, 612
BseNI ACTGG 1 cut(s) 1094
BseRI GAGGAG 1 cut(s) 429
BseXI GCAGC 4 cut(s) 124, 126, 459, 891
Bsh1236I CGCG 1 cut(s) 817
BshFI GGCC 2 cut(s) 754, 1167
BslI CCNNNNNNNGG 2 cut(s) 157, 1014
BsnI GGCC 2 cut(s) 754, 1167
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 8 cut(s) 19, 53, 97, 610, 694, 886, 929, 996
BspACI CCGC 2 cut(s) 815, 817
BspANI GGCC 2 cut(s) 754, 1167
BspCNI CTCAG 2 cut(s) 478, 613
BspFNI CGCG 1 cut(s) 817
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 4 cut(s) 92, 618, 894, 937
BspQI GCTCTTC 1 cut(s) 815
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 1 cut(s) 1094
BssECI CCNNGG 2 cut(s) 815, 972
BssMI GATC 8 cut(s) 19, 53, 97, 610, 694, 886, 929, 996
BssSI CACGAG 2 cut(s) 614, 1187
BssT1I CCWWGG 1 cut(s) 972
Bst2BI CACGAG 2 cut(s) 614, 1187
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 1 cut(s) 800
Bst6I CTCTTC 3 cut(s) 436, 717, 815
BstAUI TGTACA 1 cut(s) 319
BstDEI CTNAG 6 cut(s) 50, 362, 443, 465, 621, 925
BstDSI CCRYGG 1 cut(s) 815
BstEII GGTNACC 1 cut(s) 1027
BstF5I GGATG 2 cut(s) 343, 529
BstFNI CGCG 1 cut(s) 817
BstKTI GATC 8 cut(s) 22, 56, 100, 613, 697, 889, 932, 999
BstMBI GATC 8 cut(s) 19, 53, 97, 610, 694, 886, 929, 996
BstMWI GCNNNNNNNGC 3 cut(s) 114, 656, 707
BstNI CCWGG 1 cut(s) 675
BstPI GGTNACC 1 cut(s) 1027
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 2 cut(s) 645, 711
BstUI CGCG 1 cut(s) 817
BstV1I GCAGC 4 cut(s) 124, 126, 459, 891
BstV2I GAAGAC 3 cut(s) 11, 225, 560
BstX2I RGATCY 2 cut(s) 886, 996
BstYI RGATCY 2 cut(s) 886, 996
BsuRI GGCC 2 cut(s) 754, 1167
BtgI CCRYGG 1 cut(s) 815
BtsCI GGATG 2 cut(s) 343, 529
BtsIMutI CAGTG 1 cut(s) 1226
CaiI CAGNNNCTG 1 cut(s) 653
Cfr13I GGNCC 1 cut(s) 1165
Cfr42I CCGCGG 1 cut(s) 818
Csp6I GTAC 3 cut(s) 84, 143, 320
CviAII CATG 5 cut(s) 95, 808, 883, 1117, 1145
CviQI GTAC 3 cut(s) 84, 143, 320
DdeI CTNAG 6 cut(s) 50, 362, 443, 465, 621, 925
DpnI GATC 8 cut(s) 21, 55, 99, 612, 696, 888, 931, 998
DpnII GATC 8 cut(s) 19, 53, 97, 610, 694, 886, 929, 996
EaeI YGGCCR 1 cut(s) 752
Eam1104I CTCTTC 3 cut(s) 436, 717, 815
EarI CTCTTC 3 cut(s) 436, 717, 815
Eco130I CCWWGG 1 cut(s) 972
Eco32I GATATC 2 cut(s) 988, 1114
Eco57I CTGAAG 4 cut(s) 219, 417, 675, 1128
Eco91I GGTNACC 1 cut(s) 1027
EcoO65I GGTNACC 1 cut(s) 1027
EcoRII CCWGG 1 cut(s) 673
EcoRV GATATC 2 cut(s) 988, 1114
EcoT14I CCWWGG 1 cut(s) 972
ErhI CCWWGG 1 cut(s) 972
FaeI CATG 5 cut(s) 98, 811, 886, 1120, 1148
FatI CATG 5 cut(s) 94, 807, 882, 1116, 1144
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 1 cut(s) 355
Fnu4HI GCNGC 4 cut(s) 115, 138, 448, 880
FokI GGATG 2 cut(s) 350, 536
Fsp4HI GCNGC 4 cut(s) 115, 138, 448, 880
FspBI CTAG 4 cut(s) 81, 456, 603, 914
GluI GCNGC 4 cut(s) 115, 138, 448, 880
HaeIII GGCC 2 cut(s) 754, 1167
Hin1II CATG 5 cut(s) 98, 811, 886, 1120, 1148
HincII GTYRAC 1 cut(s) 356
HindII GTYRAC 1 cut(s) 356
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 9 cut(s) 218, 352, 395, 410, 511, 538, 557, 851, 1133
HphI GGTGA 2 cut(s) 240, 804
Hpy166II GTNNAC 3 cut(s) 322, 356, 627
Hpy188I TCNGA 8 cut(s) 24, 47, 160, 238, 468, 610, 694, 992
Hpy188III TCNNGA 4 cut(s) 515, 542, 614, 1187
Hpy8I GTNNAC 3 cut(s) 322, 356, 627
HpyAV CCTTC 3 cut(s) 157, 261, 1020
HpyCH4III ACNGT 1 cut(s) 800
HpyCH4V TGCA 3 cut(s) 108, 257, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 656, 707
HpyF3I CTNAG 6 cut(s) 50, 362, 443, 465, 621, 925
Hsp92II CATG 5 cut(s) 98, 811, 886, 1120, 1148
Ksp22I TGATCA 1 cut(s) 19
KspI CCGCGG 1 cut(s) 818
Kzo9I GATC 8 cut(s) 19, 53, 97, 610, 694, 886, 929, 996
LguI GCTCTTC 1 cut(s) 815
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 8 cut(s) 250, 267, 555, 660, 687, 963, 1009, 1107
Lsp1109I GCAGC 4 cut(s) 124, 126, 459, 891
LweI GCATC 1 cut(s) 370
MaeI CTAG 4 cut(s) 81, 456, 603, 914
MaeIII GTNAC 4 cut(s) 810, 1027, 1078, 1184
MalI GATC 8 cut(s) 21, 55, 99, 612, 696, 888, 931, 998
MboI GATC 8 cut(s) 19, 53, 97, 610, 694, 886, 929, 996
MfeI CAATTG 1 cut(s) 57
MflI RGATCY 2 cut(s) 886, 996
MlsI TGGCCA 1 cut(s) 754
MluCI AATT 5 cut(s) 57, 631, 768, 855, 1194
MluNI TGGCCA 1 cut(s) 754
MlyI GAGTC 5 cut(s) 227, 361, 404, 404, 566
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 7 cut(s) 450, 472, 610, 709, 753, 1008, 1183
Mox20I TGGCCA 1 cut(s) 754
MroXI GAANNNNTTC 1 cut(s) 430
MscI TGGCCA 1 cut(s) 754
MseI TTAA 3 cut(s) 863, 1202, 1209
MslI CAYNNNNRTG 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 754
MspA1I CMGCKG 1 cut(s) 817
MspR9I CCNGG 1 cut(s) 675
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 675
MvnI CGCG 1 cut(s) 817
MwoI GCNNNNNNNGC 3 cut(s) 114, 656, 707
NdeII GATC 8 cut(s) 19, 53, 97, 610, 694, 886, 929, 996
NlaIII CATG 5 cut(s) 98, 811, 886, 1120, 1148
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 810, 1184
PciSI GCTCTTC 1 cut(s) 815
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 4 cut(s) 511, 538, 851, 1133
PflFI GACNNNGTC 1 cut(s) 604
PkrI GCNGC 4 cut(s) 116, 139, 449, 881
PleI GAGTC 5 cut(s) 226, 360, 403, 404, 565
PpsI GAGTC 5 cut(s) 226, 360, 403, 404, 565
Psp6I CCWGG 1 cut(s) 673
PspEI GGTNACC 1 cut(s) 1027
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 1165
PstNI CAGNNNCTG 1 cut(s) 653
PsuI RGATCY 2 cut(s) 886, 996
PsyI GACNNNGTC 1 cut(s) 604
RsaI GTAC 3 cut(s) 85, 144, 321
RsaNI GTAC 3 cut(s) 84, 143, 320
RseI CAYNNNNRTG 1 cut(s) 315
SacII CCGCGG 1 cut(s) 818
SalI GTCGAC 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 815
SaqAI TTAA 3 cut(s) 863, 1202, 1209
SatI GCNGC 4 cut(s) 115, 138, 448, 880
Sau3AI GATC 8 cut(s) 19, 53, 97, 610, 694, 886, 929, 996
Sau96I GGNCC 1 cut(s) 1165
SchI GAGTC 5 cut(s) 227, 361, 404, 404, 566
ScrFI CCNGG 1 cut(s) 675
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 2 cut(s) 645, 711
Sfr303I CCGCGG 1 cut(s) 818
SgrBI CCGCGG 1 cut(s) 818
SmiMI CAYNNNNRTG 1 cut(s) 315
SpeI ACTAGT 1 cut(s) 913
Sse9I AATT 5 cut(s) 57, 631, 768, 855, 1194
SsiI CCGC 2 cut(s) 815, 817
SspI AATATT 2 cut(s) 16, 1054
SspMI CTAG 4 cut(s) 81, 456, 603, 914
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 1 cut(s) 972
TaaI ACNGT 1 cut(s) 800
TaqI TCGA 3 cut(s) 221, 355, 1013
TasI AATT 5 cut(s) 57, 631, 768, 855, 1194
TatI WGTACW 1 cut(s) 319
TfiI GAWTC 4 cut(s) 511, 538, 851, 1133
Tru1I TTAA 3 cut(s) 863, 1202, 1209
Tru9I TTAA 3 cut(s) 863, 1202, 1209
TscAI CASTG 1 cut(s) 1233
TseFI GTSAC 2 cut(s) 810, 1184
TseI GCWGC 4 cut(s) 114, 137, 447, 879
Tsp45I GTSAC 2 cut(s) 810, 1184
TspRI CASTG 1 cut(s) 1233
Tth111I GACNNNGTC 1 cut(s) 604
XmiI GTMKAC 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 430
XspI CTAG 4 cut(s) 81, 456, 603, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.