RchiOBHm_Chr4g0408911

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015139
Physical Location & Seq
Reverse (-)
31841513 .. 31844353
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2349 bp
ATGGCATTGCCAAGAATCTCCAAGACTCATCAAAACCTCTGGAAATCAATAAACCCCATCAACCCAACTGCGTTCTTTTCCCTCATCTTCACCAACATCCACACTCCCTCATCGAATTCACCCAGACCCATTTGCACCAAAACCCACTCTGACCCTTTTCTTCCTAATCCAGACGTGGGTCACGTCGCCGATGGTCTCATTTCCATCTTCACCAAGCAACCTTTCTCCCCAGACAACCCAGATTTGAAGCATTTTGCTTCAAGAATCACCCCAAAAGCAGTCGAATGCGTGCTGAATGGGCTCAAGAGCTGGAAGCTAGCTCAATTGTTCTTCACCTGGGCATCAAACCAATGTGGGTACAAGCACAATTGCTATACCTACAATGCCATGGCTTCACACCTATCACGTGCTCGACAAAATGCCCCAATGAGAGCCCTGGCCATGGAAGTTGTGGATTCCAATTGTTATATGACCCCTGGAGCTTTGGGTTTCTTTCTAAGATGCTTAGGGAGTGTGCAGTTGGTTGAAGAAGCCAACATTTTGTTTGATCAAGTTTGTACAAAGGGTCTTTGTGTTCCAAATAGCTATAGCTATAACTGTTTGTTGGAGGCTATATCCAAGTCTGGTTCGATTGAGTTGCTTGAGAAGCGAATGAAAGAAATGGGGGATTCTGGTTTGGAATTCGATAGGTACACACTGACTGCGGGGTTGAAGGTTTATTGCAATGCAGGGAAGTTCGAAAAGGCTTTGAATGTTTACAATGAGATGCATGAGAAGAGGTGGGTGGATGCACATGCCGTGTCTATCTTGGTGTTGCATTTGAGCAAGTCGGGTGAGGTGGACAAGGCTTTTGATTTGATTGAAAGAATGGAACGTCGCAATCTTGGCTTGAATGACAAGACATTTCGTGTTTTGATTCATGGGTTTGTGAGGGAGTCCAGAGTGGATAAGGCCCTCCAACTGTTTGATAAAATGCGGAAGTCAGGTTTCTCTGTTGACGTTTCTATTTATGATGTACTGATTGGAGGGCTCTGTAAGAATAGAGAGATTGAGAAAGCCTTGTCTATGTATTCGGAAATGAAGGATTTGGGAATCCATTCTGATGTTAGAGTCCTTACTAAGCTCATATTAGCTTGTTCTGATGAAAGGGAAATGATTCAGATGCTTGAGGAAAGTCAGGAACATTTAAATGAAGAGGATATGCTTTTGCTTTGCAGTTCTGTGCTGAATAGTCTGGTTACTAACGACTCCATTGACAGAGCTTATCGACTGCTTCAGGCAATGATGAAAAAAGAATCTGATGCTGATCCAGTGGTAAAGAAAAAGGTACGTCCTACCACCCGTTCATTTGAAATTGTTATTGATGGCCTTCTAAAATTTGGTAAGTTGGCCGTGGCATTAAGCCTTTTGGAAGATATGAATCAGATTGGGTGTAAACCAAATGTAGTAATTTACAATAATGTAATTGATGAACTGTGCAAATCAAATAGATTGGAGGAAAGTTATAAGCTTCTGAGAGAGATGGAGCAATCTGGAGTTGAACCAACTCATTTTACCCATAACTTGATATATGGTTGCCACTGTAGAAGAGAGGATGTTCAAGGAGCCCTTAACCTAGTGAAGGAGATGCGTGTTTGCGGACATGAACCATGGAAAAAACATTCCACCTTGCTCGTGAAGCAGTTGTGCGAACATGGAAAGGCAGCTGAAGCTTGTAATTTTCTTGATAAAATGGTTGAAGTAAGTTTTGTCCCTCGTCTAGTTTCCTATTCTGCGGTTATTAGTGGATTACTCAAAATTCAAGAAGTAGATCGAGCTTTACAGCTGTTTCAGGACATCTGTGCTGATGGCTATTGTCCTGATGTAGTTTTCTATAACATAATGATAAATGGTCTATGTAAGGCCAAAAGAGTCTCAGAAGCAGAAAACTTTCTGAAGGAAATGGTCAGGAAGGGGCTTGTTCCCTCAGTTGTAACCTACAATCTGCTGATAAATGGATATTGTAAAAACGATGATGTGGATAAAGCCATGACGTGCCTCTCCAGGATCTTTGATGAAGCCAGAGAACCTAACGTGATTACATATACAACCTTAATAGATGGATTATGTAATGCTGGAAGGATTGATGATGCTCTTGTGCTTTGGAACGACATGGCGAAGAAAGGATGTGCTCCAAACAGAATTGCTTTTATGGCTCTTATTAACGGTCTTTGCAAGTGTGGTAAGCCTGCTGAGGCTTTAGCCTATCTTCGTGAGATGGAAGAGAAGGAAATGAAACCTGGGATACGTGTATATTCAGCAATAACAAGTGCTTTAATCTCTAATTTAAACATTCCCCCTGCCACTTGA

Protein Analysis

782

Amino Acids

88.03

Weight (kDa)

7.43

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 193 - 242 4.5e-06 PPR repeat family
TPR_24 PF23276 203 - 324 1.4e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 267 - 311 1.1e-07 PPR repeat family
TPR_24 PF23276 274 - 359 3.5e-07 Fungal tetratrico peptide repeats
PPR PF01535 301 - 330 3.5e-06 PPR repeat
PPR_2 PF13041 333 - 379 6.4e-09 PPR repeat family
PPR PF01535 336 - 365 1.5e-06 PPR repeat
PPR_3 PF13812 468 - 525 3.1e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 477 - 509 8.8e-11 PPR repeat
PPR_2 PF13041 480 - 527 8e-13 PPR repeat family
PPR_long PF17177 598 - 692 9.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 609 - 669 5.9e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 616 - 649 1.3e-12 PPR repeat
PPR_2 PF13041 620 - 669 4.2e-19 PPR repeat family
PPR PF01535 623 - 653 1.6e-08 PPR repeat
PPR_1 PF12854 651 - 677 1.4e-10 PPR repeat
PPR_2 PF13041 655 - 704 1.5e-16 PPR repeat family
PPR PF01535 658 - 682 4.1e-06 PPR repeat
PPR_1 PF12854 689 - 718 4.1e-13 PPR repeat
PPR_3 PF13812 689 - 735 9.9e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 690 - 739 7.7e-18 PPR repeat family
PPR PF01535 693 - 723 5.5e-08 PPR repeat
PPR_1 PF12854 721 - 754 8.5e-08 PPR repeat
PPR_2 PF13041 725 - 772 8.8e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08310 AT5G08310
fragaria_vesca FvH4_4g11722 FvH4_4g11723
prunus_persica Prupe.7G271800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0408911
rosa_laevigata RLG00000008609
rosa_multiflora Rmu_sc0037819.1_g000001 Rmu_ssc0000300.1_g000001
rosa_roxburghii Rroxscaffold_5G00353290
rosa_rugosa Rorug04G0088600
rosa_samantha Rh4AG152300 Rh4BG149800 Rh4CG160700 Rh4DG145800
rosa_wichuraiana Rw4G012550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1506
AciI CCGC 4 cut(s) 704, 976, 1638, 1775
AclWI GGATC 2 cut(s) 1301, 2054
AcoI YGGCCR 2 cut(s) 438, 1389
AcsI RAATTY 4 cut(s) 115, 680, 1376, 1797
AcuI CTGAAG 3 cut(s) 1259, 1728, 1955
AcvI CACGTG 1 cut(s) 407
AfaI GTAC 5 cut(s) 359, 559, 692, 1017, 1329
AfiI CCNNNNNNNGG 3 cut(s) 176, 442, 1621
AflIII ACRYGT 1 cut(s) 2287
AjiI CACGTC 3 cut(s) 175, 184, 2034
AjnI CCWGG 5 cut(s) 335, 435, 475, 2042, 2278
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
Alw21I GWGCWC 2 cut(s) 412, 2173
Alw26I GTCTC 2 cut(s) 200, 1918
AlwI GGATC 2 cut(s) 1301, 2054
AoxI GGCC 5 cut(s) 438, 951, 1366, 1389, 1902
ApeKI GCWGC 1 cut(s) 1703
ApoI RAATTY 4 cut(s) 115, 680, 1376, 1797
ArsI GACNNNNNNTTYG 2 cut(s) 833, 865
Asp700I GAANNNNTTC 3 cut(s) 1096, 1155, 1929
AspS9I GGNCC 1 cut(s) 952
AsuHPI GGTGA 6 cut(s) 82, 111, 202, 259, 325, 845
AsuII TTCGAA 1 cut(s) 738
AsuNHI GCTAGC 1 cut(s) 316
BalI TGGCCA 1 cut(s) 440
BanII GRGCYC 4 cut(s) 303, 436, 1032, 1609
BauI CACGAG 1 cut(s) 1673
BbrPI CACGTG 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 412, 2173
BbvCI CCTCAGC 1 cut(s) 2232
BbvI GCAGC 1 cut(s) 1715
BccI CCATC 8 cut(s) 65, 185, 212, 1358, 1516, 1841, 2093, 2251
BceAI ACGGC 2 cut(s) 782, 1376
BcgI CGANNNNNNTGC 2 cut(s) 619, 653
BciT130I CCWGG 5 cut(s) 337, 437, 477, 2044, 2280
BciVI GTATCC 1 cut(s) 2277
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 2 cut(s) 200, 1918
BfaI CTAG 3 cut(s) 317, 1616, 1760
BfmI CTRYAG 2 cut(s) 586, 1582
BfuI GTATCC 1 cut(s) 2277
BisI GCNGC 1 cut(s) 1704
BlsI GCNGC 1 cut(s) 1705
Bme1390I CCNGG 5 cut(s) 337, 437, 477, 2044, 2280
BmgBI CACGTC 3 cut(s) 175, 184, 2034
BmgT120I GGNCC 1 cut(s) 952
BmiI GGNNCC 1 cut(s) 1606
BmrFI CCNGG 5 cut(s) 337, 437, 477, 2044, 2280
BmsI GCATC 8 cut(s) 350, 491, 756, 778, 1152, 1291, 1617, 2119
BmtI GCTAGC 1 cut(s) 320
BoxI GACNNNNGTC 1 cut(s) 177
BpmI CTGGAG 3 cut(s) 498, 1554, 2026
Bpu10I CCTNAGC 2 cut(s) 505, 2232
Bpu14I TTCGAA 1 cut(s) 738
BpuEI CTTGAG 3 cut(s) 287, 662, 1187
BsaAI YACGTR 2 cut(s) 407, 2288
BsaBI GATNNNNATC 2 cut(s) 1305, 1419
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 8 cut(s) 336, 387, 435, 441, 475, 1392, 1649, 2279
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 442, 1621
Bse1I ACTGG 1 cut(s) 1310
Bse3DI GCAATG 3 cut(s) 5, 730, 1287
Bse8I GATNNNNATC 2 cut(s) 1305, 1419
BseBI CCWGG 5 cut(s) 337, 437, 477, 2044, 2280
BseDI CCNNGG 8 cut(s) 336, 387, 435, 441, 475, 1392, 1649, 2279
BseGI GGATG 4 cut(s) 96, 793, 1600, 2171
BseJI GATNNNNATC 2 cut(s) 1305, 1419
BseLI CCNNNNNNNGG 3 cut(s) 176, 442, 1621
BseMI GCAATG 3 cut(s) 5, 730, 1287
BseMII CTCAG 4 cut(s) 1505, 1929, 1980, 2223
BseNI ACTGG 1 cut(s) 1310
BseXI GCAGC 1 cut(s) 1715
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 5 cut(s) 440, 953, 1368, 1391, 1904
BsiHKAI GWGCWC 2 cut(s) 412, 2173
BslFI GGGAC 1 cut(s) 1736
BslI CCNNNNNNNGG 3 cut(s) 176, 442, 1621
BsmAI GTCTC 2 cut(s) 200, 1918
BsmFI GGGAC 1 cut(s) 1736
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 5 cut(s) 440, 953, 1368, 1391, 1904
Bso31I GGTCTC 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 738
Bsp1286I GDGCHC 6 cut(s) 303, 412, 436, 1032, 1609, 2173
Bsp1407I TGTACA 1 cut(s) 557
Bsp143I GATC 4 cut(s) 547, 1306, 1810, 2046
Bsp19I CCATGG 3 cut(s) 387, 441, 1649
BspACI CCGC 4 cut(s) 704, 976, 1638, 1775
BspANI GGCC 5 cut(s) 440, 953, 1368, 1391, 1904
BspCNI CTCAG 4 cut(s) 1506, 1928, 1979, 2224
BspLI GGNNCC 1 cut(s) 1606
BspOI GCTAGC 1 cut(s) 320
BspPI GGATC 2 cut(s) 1301, 2054
BspT104I TTCGAA 1 cut(s) 738
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 3 cut(s) 5, 730, 1287
BsrGI TGTACA 1 cut(s) 557
BsrI ACTGG 1 cut(s) 1310
BssECI CCNNGG 8 cut(s) 336, 387, 435, 441, 475, 1392, 1649, 2279
BssMI GATC 4 cut(s) 547, 1306, 1810, 2046
BssSI CACGAG 1 cut(s) 1673
BssT1I CCWWGG 3 cut(s) 387, 441, 1649
Bst2BI CACGAG 1 cut(s) 1673
Bst2UI CCWGG 5 cut(s) 337, 437, 477, 2044, 2280
Bst4CI ACNGT 5 cut(s) 599, 963, 1476, 1583, 2207
Bst6I CTCTTC 4 cut(s) 770, 1188, 1582, 2256
BstAUI TGTACA 1 cut(s) 557
BstBAI YACGTR 2 cut(s) 407, 2288
BstBI TTCGAA 1 cut(s) 738
BstC8I GCNNGC 3 cut(s) 290, 318, 2229
BstDEI CTNAG 7 cut(s) 497, 505, 1119, 1514, 1915, 1966, 2232
BstDSI CCRYGG 4 cut(s) 387, 441, 1392, 1649
BstENI CCTNNNNNAGG 1 cut(s) 1619
BstF5I GGATG 4 cut(s) 96, 793, 1600, 2171
BstKTI GATC 4 cut(s) 550, 1309, 1813, 2049
BstMAI GTCTC 2 cut(s) 200, 1918
BstMBI GATC 4 cut(s) 547, 1306, 1810, 2046
BstMWI GCNNNNNNNGC 6 cut(s) 298, 646, 885, 1678, 1709, 2192
BstNI CCWGG 5 cut(s) 337, 437, 477, 2044, 2280
BstNSI RCATGY 1 cut(s) 797
BstPAI GACNNNNGTC 1 cut(s) 177
BstSCI CCNGG 5 cut(s) 335, 435, 475, 2042, 2278
BstSFI CTRYAG 2 cut(s) 586, 1582
BstV1I GCAGC 1 cut(s) 1715
BstX2I RGATCY 1 cut(s) 2046
BstYI RGATCY 1 cut(s) 2046
BsuI GTATCC 1 cut(s) 2277
BsuRI GGCC 5 cut(s) 440, 953, 1368, 1391, 1904
BtgI CCRYGG 4 cut(s) 387, 441, 1392, 1649
BtrI CACGTC 3 cut(s) 175, 184, 2034
BtsCI GGATG 4 cut(s) 96, 793, 1600, 2171
BtsIMutI CAGTG 3 cut(s) 695, 1317, 1579
Cac8I GCNNGC 3 cut(s) 290, 318, 2229
Cfr13I GGNCC 1 cut(s) 952
Csp6I GTAC 5 cut(s) 358, 558, 691, 1016, 1328
CviQI GTAC 5 cut(s) 358, 558, 691, 1016, 1328
DdeI CTNAG 7 cut(s) 497, 505, 1119, 1514, 1915, 1966, 2232
DpnI GATC 4 cut(s) 549, 1308, 1812, 2048
DpnII GATC 4 cut(s) 547, 1306, 1810, 2046
DraI TTTAAA 2 cut(s) 1188, 2328
EaeI YGGCCR 2 cut(s) 438, 1389
Eam1104I CTCTTC 4 cut(s) 770, 1188, 1582, 2256
EarI CTCTTC 4 cut(s) 770, 1188, 1582, 2256
Eco130I CCWWGG 3 cut(s) 387, 441, 1649
Eco24I GRGCYC 4 cut(s) 303, 436, 1032, 1609
Eco31I GGTCTC 1 cut(s) 200
Eco57I CTGAAG 3 cut(s) 1259, 1728, 1955
Eco72I CACGTG 1 cut(s) 407
EcoNI CCTNNNNNAGG 1 cut(s) 1619
EcoO109I RGGNCCY 1 cut(s) 952
EcoRI GAATTC 2 cut(s) 115, 680
EcoRII CCWGG 5 cut(s) 335, 435, 475, 2042, 2278
EcoT14I CCWWGG 3 cut(s) 387, 441, 1649
EcoT22I ATGCAT 1 cut(s) 771
EcoT38I GRGCYC 4 cut(s) 303, 436, 1032, 1609
ErhI CCWWGG 3 cut(s) 387, 441, 1649
FalI AAGNNNNNCTT 2 cut(s) 1593, 1625
FaqI GGGAC 1 cut(s) 1736
FauI CCCGC 1 cut(s) 697
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 1704
FokI GGATG 4 cut(s) 83, 800, 1607, 2178
FriOI GRGCYC 4 cut(s) 303, 436, 1032, 1609
Fsp4HI GCNGC 1 cut(s) 1704
FspBI CTAG 3 cut(s) 317, 1616, 1760
GluI GCNGC 1 cut(s) 1704
GsuI CTGGAG 3 cut(s) 498, 1554, 2026
HaeIII GGCC 5 cut(s) 440, 953, 1368, 1391, 1904
HincII GTYRAC 1 cut(s) 997
HindII GTYRAC 1 cut(s) 997
HindIII AAGCTT 2 cut(s) 1508, 1710
HphI GGTGA 6 cut(s) 82, 111, 202, 259, 325, 845
Hpy166II GTNNAC 5 cut(s) 693, 757, 841, 997, 1436
Hpy8I GTNNAC 5 cut(s) 693, 757, 841, 997, 1436
Hpy99I CGWCG 2 cut(s) 188, 879
HpyAV CCTTC 8 cut(s) 706, 1075, 1379, 1615, 1930, 1945, 2112, 2260
HpyCH4III ACNGT 5 cut(s) 599, 963, 1476, 1583, 2207
HpyCH4IV ACGT 9 cut(s) 174, 183, 406, 874, 999, 1330, 2033, 2073, 2287
HpyF10VI GCNNNNNNNGC 6 cut(s) 298, 646, 885, 1678, 1709, 2192
HpyF3I CTNAG 7 cut(s) 497, 505, 1119, 1514, 1915, 1966, 2232
HpySE526I ACGT 9 cut(s) 174, 183, 406, 874, 999, 1330, 2033, 2073, 2287
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 4 cut(s) 547, 1306, 1810, 2046
LmnI GCTCC 4 cut(s) 479, 1525, 1604, 2176
Lsp1109I GCAGC 1 cut(s) 1715
LweI GCATC 8 cut(s) 350, 491, 756, 778, 1152, 1291, 1617, 2119
MaeI CTAG 3 cut(s) 317, 1616, 1760
MaeII ACGT 9 cut(s) 174, 183, 406, 874, 999, 1330, 2033, 2073, 2287
MaeIII GTNAC 3 cut(s) 179, 1237, 1972
MalI GATC 4 cut(s) 549, 1308, 1812, 2048
MboI GATC 4 cut(s) 547, 1306, 1810, 2046
MfeI CAATTG 3 cut(s) 323, 367, 460
MflI RGATCY 1 cut(s) 2046
MhlI GDGCHC 6 cut(s) 303, 412, 436, 1032, 1609, 2173
MlsI TGGCCA 1 cut(s) 440
MluNI TGGCCA 1 cut(s) 440
MlyI GAGTC 5 cut(s) 19, 944, 1119, 1241, 1920
MmeI TCCRAC 2 cut(s) 585, 982
Mox20I TGGCCA 1 cut(s) 440
Mph1103I ATGCAT 1 cut(s) 771
MroXI GAANNNNTTC 3 cut(s) 1096, 1155, 1929
MscI TGGCCA 1 cut(s) 440
MseI TTAA 7 cut(s) 1187, 1400, 1611, 2093, 2202, 2315, 2327
MslI CAYNNNNRTG 2 cut(s) 1101, 1188
Msp20I TGGCCA 1 cut(s) 440
MspA1I CMGCKG 2 cut(s) 1706, 1825
MspR9I CCNGG 5 cut(s) 337, 437, 477, 2044, 2280
MunI CAATTG 3 cut(s) 323, 367, 460
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 5 cut(s) 337, 437, 477, 2044, 2280
MwoI GCNNNNNNNGC 6 cut(s) 298, 646, 885, 1678, 1709, 2192
NcoI CCATGG 3 cut(s) 387, 441, 1649
NdeII GATC 4 cut(s) 547, 1306, 1810, 2046
NheI GCTAGC 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 1606
NmuCI GTSAC 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 771
NspI RCATGY 1 cut(s) 797
NspV TTCGAA 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 290
PdmI GAANNNNTTC 3 cut(s) 1096, 1155, 1929
PfeI GAWTC 9 cut(s) 15, 264, 455, 668, 916, 1092, 1156, 1295, 1420
PfoI TCCNGGA 1 cut(s) 2042
PkrI GCNGC 1 cut(s) 1705
PleI GAGTC 5 cut(s) 19, 943, 1118, 1241, 1919
PmaCI CACGTG 1 cut(s) 407
PmlI CACGTG 1 cut(s) 407
PpsI GAGTC 5 cut(s) 19, 943, 1118, 1241, 1919
Ppu21I YACGTR 2 cut(s) 407, 2288
PshAI GACNNNNGTC 1 cut(s) 177
PsiI TTATAA 1 cut(s) 1506
Psp6I CCWGG 5 cut(s) 335, 435, 475, 2042, 2278
PspCI CACGTG 1 cut(s) 407
PspGI CCWGG 5 cut(s) 335, 435, 475, 2042, 2278
PspN4I GGNNCC 1 cut(s) 1606
PspPI GGNCC 1 cut(s) 952
PsuI RGATCY 1 cut(s) 2046
PvuII CAGCTG 2 cut(s) 1706, 1825
RsaI GTAC 5 cut(s) 359, 559, 692, 1017, 1329
RsaNI GTAC 5 cut(s) 358, 558, 691, 1016, 1328
RseI CAYNNNNRTG 2 cut(s) 1101, 1188
SaqAI TTAA 7 cut(s) 1187, 1400, 1611, 2093, 2202, 2315, 2327
SatI GCNGC 1 cut(s) 1704
Sau3AI GATC 4 cut(s) 547, 1306, 1810, 2046
Sau96I GGNCC 1 cut(s) 952
SchI GAGTC 5 cut(s) 19, 944, 1119, 1241, 1920
ScrFI CCNGG 5 cut(s) 337, 437, 477, 2044, 2280
SduI GDGCHC 6 cut(s) 303, 412, 436, 1032, 1609, 2173
SfaNI GCATC 8 cut(s) 350, 491, 756, 778, 1152, 1291, 1617, 2119
SfcI CTRYAG 2 cut(s) 586, 1582
SfuI TTCGAA 1 cut(s) 738
SmiI ATTTAAAT 1 cut(s) 1188
SmiMI CAYNNNNRTG 2 cut(s) 1101, 1188
SmlI CTYRAG 3 cut(s) 302, 641, 1166
SmoI CTYRAG 3 cut(s) 302, 641, 1166
SsiI CCGC 4 cut(s) 704, 976, 1638, 1775
SspMI CTAG 3 cut(s) 317, 1616, 1760
StyD4I CCNGG 5 cut(s) 335, 435, 475, 2042, 2278
StyI CCWWGG 3 cut(s) 387, 441, 1649
SwaI ATTTAAAT 1 cut(s) 1188
TaaI ACNGT 5 cut(s) 599, 963, 1476, 1583, 2207
TaiI ACGT 9 cut(s) 177, 186, 409, 877, 1002, 1333, 2036, 2076, 2290
TaqI TCGA 8 cut(s) 113, 282, 412, 629, 684, 738, 1267, 1813
TatI WGTACW 2 cut(s) 557, 1015
TfiI GAWTC 9 cut(s) 15, 264, 455, 668, 916, 1092, 1156, 1295, 1420
Tru1I TTAA 7 cut(s) 1187, 1400, 1611, 2093, 2202, 2315, 2327
Tru9I TTAA 7 cut(s) 1187, 1400, 1611, 2093, 2202, 2315, 2327
TscAI CASTG 3 cut(s) 702, 1317, 1586
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 1703
Tsp45I GTSAC 1 cut(s) 179
TspRI CASTG 3 cut(s) 702, 1317, 1586
XagI CCTNNNNNAGG 1 cut(s) 1619
XapI RAATTY 4 cut(s) 115, 680, 1376, 1797
XceI RCATGY 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmnI GAANNNNTTC 3 cut(s) 1096, 1155, 1929
XspI CTAG 3 cut(s) 317, 1616, 1760
Zsp2I ATGCAT 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.