RchiOBHm_Chr4g0425071

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015751
Physical Location & Seq
Forward (+)
50749042 .. 50750695
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGATGACGGTGCCAAGTTACAATTTCTACTGTGGGGTGACCAGGTTGTCCTGGCAAATCTTTTCAGTGTGGGAAGTATGCTTTGCACTGGATAAACCATATATTTCAAGTTCCGCAGACACTGCAGCTGAAACAAGTGCTGAAGTTTCCCTTGAATTTGGTAGTGCAACGCAATTGTTTTTGGTGCCTTTTGTTCAACACAAGGAACAAGTGTGTGTATCACTGACACCAAATCGCCATCAAGGATCAAGACTGCTAAGCACATTAATTAGATCCCAGTCAGAGTACACAAGTTTCTCAAGTTTCCTTGCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

105

Amino Acids

11.77

Weight (kDa)

5.52

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AccB1I GGYRCC 2 cut(s) 10, 184
AciI CCGC 1 cut(s) 114
AclWI GGATC 2 cut(s) 253, 267
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 287
AgsI TTSAA 3 cut(s) 108, 155, 197
AjnI CCWGG 2 cut(s) 41, 50
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AlwI GGATC 2 cut(s) 253, 267
AlwNI CAGNNNCTG 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 155
AseI ATTAAT 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 49
BanI GGYRCC 2 cut(s) 10, 184
BbvI GCAGC 1 cut(s) 137
BccI CCATC 1 cut(s) 246
BciT130I CCWGG 2 cut(s) 43, 52
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 126
BlpI GCTNAGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 2 cut(s) 43, 52
BmiI GGNNCC 2 cut(s) 12, 186
BmrFI CCNGG 2 cut(s) 43, 52
BmrI ACTGGG 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 271
Bpu1102I GCTNAGC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 93, 277
BseBI CCWGG 2 cut(s) 43, 52
BseNI ACTGG 2 cut(s) 93, 277
BseXI GCAGC 1 cut(s) 137
BshNI GGYRCC 2 cut(s) 10, 184
Bsp143I GATC 2 cut(s) 245, 272
Bsp1720I GCTNAGC 1 cut(s) 257
BspACI CCGC 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 12, 186
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 2 cut(s) 253, 267
BspT107I GGYRCC 2 cut(s) 10, 184
BsrI ACTGG 2 cut(s) 93, 277
BssMI GATC 2 cut(s) 245, 272
Bst2UI CCWGG 2 cut(s) 43, 52
Bst4CI ACNGT 2 cut(s) 10, 32
BstAPI GCANNNNNTGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 257
BstEII GGTNACC 1 cut(s) 37
BstKTI GATC 2 cut(s) 248, 275
BstMBI GATC 2 cut(s) 245, 272
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 2 cut(s) 43, 52
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 41, 50
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 4 cut(s) 72, 86, 120, 221
CaiI CAGNNNCTG 1 cut(s) 122
CsiI ACCWGGT 1 cut(s) 41
Csp6I GTAC 1 cut(s) 286
CviJI RGCY 1 cut(s) 128
CviKI_1 RGCY 1 cut(s) 128
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 257
DpnI GATC 2 cut(s) 247, 274
DpnII GATC 2 cut(s) 245, 272
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 162
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 41, 50
FaiI YATR 3 cut(s) 79, 100, 102
FalI AAGNNNNNCTT 2 cut(s) 135, 167
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 249
Hpy8I GTNNAC 1 cut(s) 288
HpyCH4III ACNGT 2 cut(s) 10, 32
HpyCH4V TGCA 3 cut(s) 86, 125, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 257
Kzo9I GATC 2 cut(s) 245, 272
LpnPI CCDG 6 cut(s) 28, 37, 55, 64, 74, 290
Lsp1109I GCAGC 1 cut(s) 137
MabI ACCWGGT 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 17, 37
MalI GATC 2 cut(s) 247, 274
MboI GATC 2 cut(s) 245, 272
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 272
MluCI AATT 4 cut(s) 22, 155, 173, 267
MseI TTAA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 43, 52
MunI CAATTG 1 cut(s) 173
MvaI CCWGG 2 cut(s) 43, 52
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 2 cut(s) 245, 272
NlaIV GGNNCC 2 cut(s) 12, 186
NmuCI GTSAC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 127
PshBI ATTAAT 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 41, 50
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 2 cut(s) 41, 50
PspN4I GGNNCC 2 cut(s) 12, 186
PstI CTGCAG 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 245, 272
ScrFI CCNGG 2 cut(s) 43, 52
SetI ASST 2 cut(s) 47, 130
SexAI ACCWGGT 1 cut(s) 41
SfcI CTRYAG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 4 cut(s) 22, 155, 173, 267
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 41, 50
TaaI ACNGT 2 cut(s) 10, 32
TasI AATT 4 cut(s) 22, 155, 173, 267
TatI WGTACW 1 cut(s) 285
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 4 cut(s) 72, 93, 127, 228
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 37
TspRI CASTG 4 cut(s) 72, 93, 127, 228
VspI ATTAAT 1 cut(s) 266
XapI RAATTY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.