Rh5DG237000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
27028346 .. 27029450
1105 bp
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UTR
Exon/CDS
Intron
Rh5DG237000.1

Sequence Viewer

Length: 213 bp
ATGGTGGATGTTCCAGAGTTCAAGGCCCCTGTTTCAAAGACGAATCGAAGAAACTCCGAAAGAAATGTGCTTCGGGTTTCCGAGCTGCAAGCCAAAGCAATTAATATTGGTTTCAGGAGATTATGTGAACGCTATAGAGAGTTAAACTGGACCAATAATATCATGCAAAGTAATAGTAACTACTGCAGCCTCTTCTGTTTCAATCATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.3

Weight (kDa)

9.64

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 22, 36, 202
AluBI AGCT 2 cut(s) 85, 210
AluI AGCT 2 cut(s) 85, 210
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 85, 186
AseI ATTAAT 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 25, 150
AvaII GGWCC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 72, 198
BfmI CTRYAG 2 cut(s) 133, 184
BisI GCNGC 2 cut(s) 86, 187
BlsI GCNGC 2 cut(s) 87, 188
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 2 cut(s) 25, 150
BmiI GGNNCC 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bse1I ACTGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 13
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 72, 198
BshFI GGCC 1 cut(s) 26
BsnI GGCC 1 cut(s) 26
BspANI GGCC 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 90
BstF5I GGATG 1 cut(s) 13
BstSFI CTRYAG 2 cut(s) 133, 184
BstV1I GCAGC 2 cut(s) 72, 198
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 25, 150
CviAII CATG 1 cut(s) 163
CviJI RGCY 5 cut(s) 26, 85, 92, 189, 210
CviKI_1 RGCY 5 cut(s) 26, 85, 92, 189, 210
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 25
FaeI CATG 1 cut(s) 166
FaiI YATR 4 cut(s) 124, 135, 164, 207
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 86, 187
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 86, 187
GluI GCNGC 2 cut(s) 86, 187
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 1 cut(s) 166
HinfI GANTC 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 2 cut(s) 58, 82
Hpy188III TCNNGA 2 cut(s) 14, 115
Hpy8I GTNNAC 1 cut(s) 128
HpyCH4V TGCA 3 cut(s) 88, 166, 186
Hsp92II CATG 1 cut(s) 166
LpnPI CCDG 4 cut(s) 27, 42, 100, 133
Lsp1109I GCAGC 2 cut(s) 72, 198
MaeIII GTNAC 1 cut(s) 176
MboII GAAGA 2 cut(s) 60, 184
MluCI AATT 1 cut(s) 99
MnlI CCTC 1 cut(s) 200
MseI TTAA 2 cut(s) 102, 143
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 2 cut(s) 87, 188
PshBI ATTAAT 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 2 cut(s) 25, 150
PstI CTGCAG 1 cut(s) 188
SaqAI TTAA 2 cut(s) 102, 143
SatI GCNGC 2 cut(s) 86, 187
Sau96I GGNCC 2 cut(s) 25, 150
SetI ASST 2 cut(s) 87, 212
SfcI CTRYAG 2 cut(s) 133, 184
SgeI CNNG 9 cut(s) 26, 34, 41, 86, 94, 101, 127, 160, 175
SinI GGWCC 1 cut(s) 150
Sse9I AATT 1 cut(s) 99
SspI AATATT 1 cut(s) 106
TaqI TCGA 1 cut(s) 46
TasI AATT 1 cut(s) 99
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 2 cut(s) 102, 143
Tru9I TTAA 2 cut(s) 102, 143
TseI GCWGC 2 cut(s) 85, 186
VpaK11BI GGWCC 1 cut(s) 150
VspI ATTAAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.