Rroxscaffold_3G00234360

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015751
Physical Location & Seq
Reverse (-)
20689851 .. 20702986
13136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234360.1

Sequence Viewer

Length: 393 bp
ATGTCTAGTTCGGAACTTCAGATCAAAATTATTCCTTCATCAAAGTTGTTCGCCTCTTTCTCTTCTATCGGACCTCCAAATTTCAGCCTTATTGGGGATGTTTTGAGACCTGTACACCAATCCGAGGATGAGCTATTTAGAAGCGAATCAGCTCCGAATTTCAACAATGTGGGAAGTATGCTTGCATTGGATAAACCACATATTGCAAGTTCCGCAGACAGTGCTGCTGAAACAAGTGCTGAAGTTTCCCTTGAATTTGGTAGTGCAACACAATTGTTTTTGGTGCCTTTTGTTCAACACAAGGAACAAGTTCCGGCTAAACAGATAGCAAGACGGCCTAGAAGCAATATAGTCCGAGAATACTGGTGGAGCTTCTTTCTTCAACCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

130

Amino Acids

14.45

Weight (kDa)

5.87

Isoelectric Point (pI)

70.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 283
AciI CCGC 1 cut(s) 213
AcsI RAATTY 3 cut(s) 79, 157, 254
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 94, 124
AgsI TTSAA 4 cut(s) 163, 254, 296, 383
AluBI AGCT 3 cut(s) 133, 152, 372
AluI AGCT 3 cut(s) 133, 152, 372
Alw26I GTCTC 1 cut(s) 100
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 3 cut(s) 79, 157, 254
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 71
AvaII GGWCC 1 cut(s) 71
BanI GGYRCC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 2 cut(s) 6, 339
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 124
Bse1I ACTGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 103, 133
BseLI CCNNNNNNNGG 2 cut(s) 94, 124
BseNI ACTGG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 337
BshNI GGYRCC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 314
BslI CCNNNNNNNGG 2 cut(s) 94, 124
BsmAI GTCTC 1 cut(s) 100
BsnI GGCC 1 cut(s) 337
Bso31I GGTCTC 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 112
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 67
BstAPI GCANNNNNTGC 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 2 cut(s) 103, 133
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 212, 221
BstV1I GCAGC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 337
BtsCI GGATG 2 cut(s) 103, 133
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 113
CviJI RGCY 6 cut(s) 87, 133, 152, 317, 337, 372
CviKI_1 RGCY 6 cut(s) 87, 133, 152, 317, 337, 372
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 1 cut(s) 387
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 261
FaiI YATR 3 cut(s) 179, 201, 350
FalI AAGNNNNNCTT 2 cut(s) 234, 266
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 2 cut(s) 110, 140
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 2 cut(s) 6, 339
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 337
HapII CCGG 1 cut(s) 314
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 6 cut(s) 13, 21, 71, 124, 156, 356
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 3 cut(s) 185, 206, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 221
HpyF3I CTNAG 1 cut(s) 387
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 2 cut(s) 157, 369
LpnPI CCDG 3 cut(s) 123, 327, 349
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 2 cut(s) 6, 339
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 2 cut(s) 54, 371
MfeI CAATTG 1 cut(s) 272
MluCI AATT 5 cut(s) 27, 79, 157, 254, 272
MnlI CCTC 3 cut(s) 64, 84, 118
MroXI GAANNNNTTC 1 cut(s) 309
MspI CCGG 1 cut(s) 314
MunI CAATTG 1 cut(s) 272
MwoI GCNNNNNNNGC 2 cut(s) 212, 221
NdeII GATC 1 cut(s) 21
NlaIV GGNNCC 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 71
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 71
SetI ASST 6 cut(s) 76, 112, 135, 154, 374, 388
SinI GGWCC 1 cut(s) 71
Sse9I AATT 5 cut(s) 27, 79, 157, 254, 272
SsiI CCGC 1 cut(s) 213
SspMI CTAG 2 cut(s) 6, 339
TaaI ACNGT 1 cut(s) 221
TasI AATT 5 cut(s) 27, 79, 157, 254, 272
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 1 cut(s) 146
TscAI CASTG 1 cut(s) 226
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 27
TspRI CASTG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 3 cut(s) 79, 157, 254
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 2 cut(s) 6, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.