RchiOBHm_Chr4g0425071

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015751
Physical Location & Seq
Forward (+)
50749042 .. 50750695
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39430

Sequence Viewer

Length: 318 bp
ATGATGACGGTGCCAAGTTACAATTTCTACTGTGGGGTGACCAGGTTGTCCTGGCAAATCTTTTCAGTGTGGGAAGTATGCTTTGCACTGGATAAACCATATATTTCAAGTTCCGCAGACACTGCAGCTGAAACAAGTGCTGAAGTTTCCCTTGAATTTGGTAGTGCAACGCAATTGTTTTTGGTGCCTTTTGTTCAACACAAGGAACAAGTGTGTGTATCACTGACACCAAATCGCCATCAAGGATCAAGACTGCTAAGCACATTAATTAGATCCCAGTCAGAGTACACAAGTTTCTCAAGTTTCCTTGCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

105

Amino Acids

11.77

Weight (kDa)

5.52

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AccB1I GGYRCC 2 cut(s) 10, 184
AciI CCGC 1 cut(s) 114
AclWI GGATC 2 cut(s) 253, 267
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 287
AgsI TTSAA 3 cut(s) 108, 155, 197
AjnI CCWGG 2 cut(s) 41, 50
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AlwI GGATC 2 cut(s) 253, 267
AlwNI CAGNNNCTG 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 155
AseI ATTAAT 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 49
BanI GGYRCC 2 cut(s) 10, 184
BbvI GCAGC 1 cut(s) 137
BccI CCATC 1 cut(s) 246
BciT130I CCWGG 2 cut(s) 43, 52
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 126
BlpI GCTNAGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 2 cut(s) 43, 52
BmiI GGNNCC 2 cut(s) 12, 186
BmrFI CCNGG 2 cut(s) 43, 52
BmrI ACTGGG 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 271
Bpu1102I GCTNAGC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 93, 277
BseBI CCWGG 2 cut(s) 43, 52
BseNI ACTGG 2 cut(s) 93, 277
BseXI GCAGC 1 cut(s) 137
BshNI GGYRCC 2 cut(s) 10, 184
Bsp143I GATC 2 cut(s) 245, 272
Bsp1720I GCTNAGC 1 cut(s) 257
BspACI CCGC 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 12, 186
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 2 cut(s) 253, 267
BspT107I GGYRCC 2 cut(s) 10, 184
BsrI ACTGG 2 cut(s) 93, 277
BssMI GATC 2 cut(s) 245, 272
Bst2UI CCWGG 2 cut(s) 43, 52
Bst4CI ACNGT 2 cut(s) 10, 32
BstAPI GCANNNNNTGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 257
BstEII GGTNACC 1 cut(s) 37
BstKTI GATC 2 cut(s) 248, 275
BstMBI GATC 2 cut(s) 245, 272
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 2 cut(s) 43, 52
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 41, 50
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 4 cut(s) 72, 86, 120, 221
CaiI CAGNNNCTG 1 cut(s) 122
CsiI ACCWGGT 1 cut(s) 41
Csp6I GTAC 1 cut(s) 286
CviJI RGCY 1 cut(s) 128
CviKI_1 RGCY 1 cut(s) 128
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 257
DpnI GATC 2 cut(s) 247, 274
DpnII GATC 2 cut(s) 245, 272
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 162
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 41, 50
FaiI YATR 3 cut(s) 79, 100, 102
FalI AAGNNNNNCTT 2 cut(s) 135, 167
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 249
Hpy8I GTNNAC 1 cut(s) 288
HpyCH4III ACNGT 2 cut(s) 10, 32
HpyCH4V TGCA 3 cut(s) 86, 125, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 257
Kzo9I GATC 2 cut(s) 245, 272
LpnPI CCDG 6 cut(s) 28, 37, 55, 64, 74, 290
Lsp1109I GCAGC 1 cut(s) 137
MabI ACCWGGT 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 17, 37
MalI GATC 2 cut(s) 247, 274
MboI GATC 2 cut(s) 245, 272
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 272
MluCI AATT 4 cut(s) 22, 155, 173, 267
MseI TTAA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 43, 52
MunI CAATTG 1 cut(s) 173
MvaI CCWGG 2 cut(s) 43, 52
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 2 cut(s) 245, 272
NlaIV GGNNCC 2 cut(s) 12, 186
NmuCI GTSAC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 127
PshBI ATTAAT 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 41, 50
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 2 cut(s) 41, 50
PspN4I GGNNCC 2 cut(s) 12, 186
PstI CTGCAG 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 245, 272
ScrFI CCNGG 2 cut(s) 43, 52
SetI ASST 2 cut(s) 47, 130
SexAI ACCWGGT 1 cut(s) 41
SfcI CTRYAG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 4 cut(s) 22, 155, 173, 267
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 41, 50
TaaI ACNGT 2 cut(s) 10, 32
TasI AATT 4 cut(s) 22, 155, 173, 267
TatI WGTACW 1 cut(s) 285
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 4 cut(s) 72, 93, 127, 228
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 37
TspRI CASTG 4 cut(s) 72, 93, 127, 228
VspI ATTAAT 1 cut(s) 266
XapI RAATTY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.